BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Catharanthus22_contig00048226
         (273 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004232065.1| PREDICTED: pentatricopeptide repeat-containi...   115   6e-24
ref|XP_004161735.1| PREDICTED: pentatricopeptide repeat-containi...    97   2e-18
ref|XP_004148057.1| PREDICTED: pentatricopeptide repeat-containi...    97   2e-18
gb|EXB37221.1| hypothetical protein L484_020277 [Morus notabilis]      96   5e-18
ref|NP_190611.1| pentatricopeptide repeat-containing protein [Ar...    96   5e-18
gb|ESW28841.1| hypothetical protein PHAVU_002G022400g [Phaseolus...    96   6e-18
ref|XP_002877745.1| pentatricopeptide repeat-containing protein ...    94   1e-17
ref|XP_006404030.1| hypothetical protein EUTSA_v10010154mg [Eutr...    94   2e-17
ref|XP_002307242.2| hypothetical protein POPTR_0005s14010g [Popu...    91   2e-16
ref|XP_006466665.1| PREDICTED: pentatricopeptide repeat-containi...    88   1e-15
ref|XP_004512217.1| PREDICTED: LOW QUALITY PROTEIN: pentatricope...    88   1e-15
ref|XP_004301858.1| PREDICTED: pentatricopeptide repeat-containi...    87   3e-15
ref|XP_003611834.1| Pentatricopeptide repeat-containing protein ...    86   4e-15
ref|XP_002522354.1| pentatricopeptide repeat-containing protein,...    83   3e-14
ref|XP_002877746.1| hypothetical protein ARALYDRAFT_906369 [Arab...    78   1e-12
ref|XP_001754449.1| predicted protein [Physcomitrella patens] gi...    71   1e-10
ref|XP_006290722.1| hypothetical protein CARUB_v10016818mg [Caps...    70   3e-10
gb|AEB39774.1| pentatricopeptide repeat protein 65 [Funaria hygr...    69   6e-10
gb|EOY16117.1| Pentatricopeptide repeat (PPR) superfamily protei...    65   1e-08
ref|XP_002867196.1| pentatricopeptide repeat-containing protein ...    65   1e-08

>ref|XP_004232065.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g50420-like [Solanum lycopersicum]
          Length = 166

 Score =  115 bits (288), Expect = 6e-24
 Identities = 58/90 (64%), Positives = 67/90 (74%)
 Frame = -3

Query: 271 ITSIRKARELHALILTSAAAIQENPYAFNNILSMYARCGSLMDSQLVFDKMSERNIVSYN 92
           I SI KAR+LHALILTS  A   +PY FNNILSMYARCGS+ DS ++FDKM +RN+VS+N
Sbjct: 21  IISISKARQLHALILTSVPATSRSPYVFNNILSMYARCGSIQDSHILFDKMPDRNVVSFN 80

Query: 91  ALISAYSRSNKMVSWAFQLARQLMQKEGLR 2
           ALISAYSR   +  W F L  QL Q E LR
Sbjct: 81  ALISAYSRYRHLAHWTFHLLAQL-QSESLR 109


>ref|XP_004161735.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g50420-like [Cucumis sativus]
          Length = 690

 Score = 97.4 bits (241), Expect = 2e-18
 Identities = 50/84 (59%), Positives = 65/84 (77%), Gaps = 1/84 (1%)
 Frame = -3

Query: 271 ITSIRKARELHALILTS-AAAIQENPYAFNNILSMYARCGSLMDSQLVFDKMSERNIVSY 95
           +TS++ AR+LHALILTS A A   +PY  NNILSMYARCG++ +SQ VF+KM +RN+VS+
Sbjct: 47  VTSLKAARQLHALILTSIATASSLSPYVCNNILSMYARCGAIWESQKVFEKMPQRNLVSF 106

Query: 94  NALISAYSRSNKMVSWAFQLARQL 23
           NALI+AYSRS+     AF L  Q+
Sbjct: 107 NALIAAYSRSHGHAPLAFNLLSQM 130


>ref|XP_004148057.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g50420-like [Cucumis sativus]
          Length = 696

 Score = 97.4 bits (241), Expect = 2e-18
 Identities = 50/84 (59%), Positives = 65/84 (77%), Gaps = 1/84 (1%)
 Frame = -3

Query: 271 ITSIRKARELHALILTS-AAAIQENPYAFNNILSMYARCGSLMDSQLVFDKMSERNIVSY 95
           +TS++ AR+LHALILTS A A   +PY  NNILSMYARCG++ +SQ VF+KM +RN+VS+
Sbjct: 17  VTSLKAARQLHALILTSIATASSLSPYVCNNILSMYARCGAIWESQKVFEKMPQRNLVSF 76

Query: 94  NALISAYSRSNKMVSWAFQLARQL 23
           NALI+AYSRS+     AF L  Q+
Sbjct: 77  NALIAAYSRSHGHAPLAFNLLSQM 100


>gb|EXB37221.1| hypothetical protein L484_020277 [Morus notabilis]
          Length = 721

 Score = 95.9 bits (237), Expect = 5e-18
 Identities = 49/88 (55%), Positives = 64/88 (72%), Gaps = 5/88 (5%)
 Frame = -3

Query: 271 ITSIRKARELHALILTSAAAI-----QENPYAFNNILSMYARCGSLMDSQLVFDKMSERN 107
           +TS+R AR+LHAL+LTS+ A+        PY  NN+LSMYARCGSL D++ VFDKM +RN
Sbjct: 32  VTSLRLARQLHALLLTSSIAVAAVVPHSPPYTHNNVLSMYARCGSLGDARKVFDKMPQRN 91

Query: 106 IVSYNALISAYSRSNKMVSWAFQLARQL 23
           +VS+NALISAYSR+      A +L  Q+
Sbjct: 92  LVSFNALISAYSRARDNAVSALKLGNQM 119


>ref|NP_190611.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75202753|sp|Q9SCT2.1|PP277_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At3g50420 gi|6561982|emb|CAB62471.1| putative protein
           [Arabidopsis thaliana] gi|332645144|gb|AEE78665.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           thaliana]
          Length = 794

 Score = 95.9 bits (237), Expect = 5e-18
 Identities = 47/84 (55%), Positives = 63/84 (75%), Gaps = 1/84 (1%)
 Frame = -3

Query: 271 ITSIRKARELHALILTSAA-AIQENPYAFNNILSMYARCGSLMDSQLVFDKMSERNIVSY 95
           IT +++AR++HAL+LT+ A A  E+PYA NN++SMY RCGSL  ++ VFDKM  RN+VSY
Sbjct: 107 ITVLKRARQIHALVLTAGAGAATESPYANNNLISMYVRCGSLEQARKVFDKMPHRNVVSY 166

Query: 94  NALISAYSRSNKMVSWAFQLARQL 23
           NAL SAYSR+    S+AF L   +
Sbjct: 167 NALYSAYSRNPDFASYAFPLTTHM 190


>gb|ESW28841.1| hypothetical protein PHAVU_002G022400g [Phaseolus vulgaris]
          Length = 500

 Score = 95.5 bits (236), Expect = 6e-18
 Identities = 46/70 (65%), Positives = 59/70 (84%), Gaps = 1/70 (1%)
 Frame = -3

Query: 268 TSIRKARELHALILTSAAAIQ-ENPYAFNNILSMYARCGSLMDSQLVFDKMSERNIVSYN 92
           TS+R+AR+LHALILT++     ++P+ +NNILSMYARCGSL DS LVFDKM  R IVSYN
Sbjct: 71  TSLREARQLHALILTTSTVFNPQSPFVYNNILSMYARCGSLTDSHLVFDKMPRRTIVSYN 130

Query: 91  ALISAYSRSN 62
           AL++AYSR++
Sbjct: 131 ALLAAYSRAS 140


>ref|XP_002877745.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297323583|gb|EFH54004.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 764

 Score = 94.4 bits (233), Expect = 1e-17
 Identities = 49/91 (53%), Positives = 67/91 (73%), Gaps = 1/91 (1%)
 Frame = -3

Query: 271 ITSIRKARELHALILTSAA-AIQENPYAFNNILSMYARCGSLMDSQLVFDKMSERNIVSY 95
           IT++++A +LHA+ILT+ A +  E+PY  NN++SMY RCGSL  ++ +FDKM ERN+VSY
Sbjct: 20  ITALKRACQLHAIILTAGAGSASESPYKNNNLISMYVRCGSLEQARKLFDKMPERNVVSY 79

Query: 94  NALISAYSRSNKMVSWAFQLARQLMQKEGLR 2
           NAL SAYSR+    S+AF L  Q M  E L+
Sbjct: 80  NALYSAYSRNLDYASYAFSLINQ-MASESLK 109


>ref|XP_006404030.1| hypothetical protein EUTSA_v10010154mg [Eutrema salsugineum]
           gi|557105149|gb|ESQ45483.1| hypothetical protein
           EUTSA_v10010154mg [Eutrema salsugineum]
          Length = 724

 Score = 94.0 bits (232), Expect = 2e-17
 Identities = 50/90 (55%), Positives = 65/90 (72%)
 Frame = -3

Query: 271 ITSIRKARELHALILTSAAAIQENPYAFNNILSMYARCGSLMDSQLVFDKMSERNIVSYN 92
           IT++++AR+LHAL+LT      E+PYA NN++SMYARCG L  ++ VFDKM +RN+VSYN
Sbjct: 33  ITALKRARQLHALVLTGGGTA-ESPYANNNLISMYARCGFLEQARNVFDKMPQRNVVSYN 91

Query: 91  ALISAYSRSNKMVSWAFQLARQLMQKEGLR 2
           AL SAYSRS    S AF L    M+ + LR
Sbjct: 92  ALYSAYSRSPDYASCAFSLITH-MEFDSLR 120


>ref|XP_002307242.2| hypothetical protein POPTR_0005s14010g [Populus trichocarpa]
           gi|550338888|gb|EEE94238.2| hypothetical protein
           POPTR_0005s14010g [Populus trichocarpa]
          Length = 660

 Score = 90.9 bits (224), Expect = 2e-16
 Identities = 47/72 (65%), Positives = 59/72 (81%), Gaps = 2/72 (2%)
 Frame = -3

Query: 271 ITSIRKARELHALILTS--AAAIQENPYAFNNILSMYARCGSLMDSQLVFDKMSERNIVS 98
           ITS+RKA +LHALILT+  + +  + PY  NNILSMYARCGSL +++ VFDKM +RNIVS
Sbjct: 16  ITSLRKAYQLHALILTTTISTSYAQCPYLNNNILSMYARCGSLFNAKKVFDKMPQRNIVS 75

Query: 97  YNALISAYSRSN 62
           YNALISA+SR +
Sbjct: 76  YNALISAFSRDS 87


>ref|XP_006466665.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g50420-like [Citrus sinensis]
          Length = 708

 Score = 88.2 bits (217), Expect = 1e-15
 Identities = 45/92 (48%), Positives = 68/92 (73%), Gaps = 2/92 (2%)
 Frame = -3

Query: 271 ITSIRKARELHALILTS--AAAIQENPYAFNNILSMYARCGSLMDSQLVFDKMSERNIVS 98
           ITS+++AR++HAL+LT+       ++PY +NN+LSMY RCGS+ D++ VFD++ +R++VS
Sbjct: 22  ITSLKRARQIHALVLTTNHIPINAQSPYMYNNVLSMYGRCGSIRDARQVFDEIPKRSLVS 81

Query: 97  YNALISAYSRSNKMVSWAFQLARQLMQKEGLR 2
           YNALI+AYSR +      F+L  Q M+ E LR
Sbjct: 82  YNALIAAYSRDHDHAHLTFRLIDQ-MEFECLR 112


>ref|XP_004512217.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g50420-like [Cicer arietinum]
          Length = 966

 Score = 88.2 bits (217), Expect = 1e-15
 Identities = 46/91 (50%), Positives = 69/91 (75%), Gaps = 2/91 (2%)
 Frame = -3

Query: 268 TSIRKARELHALILTSAAA-IQENPYAFNNILSMYARCGSLMDSQLVFDKMSERNIVSYN 92
           TS+++AR+LHAL+LT+  A + ++ + +NN++SMYARCGSL D+  VFDKM  R +VSYN
Sbjct: 274 TSLQEARQLHALLLTTPNAFVSKSAFVYNNVISMYARCGSLKDAHQVFDKMPHRTLVSYN 333

Query: 91  ALISAYSRSNKMVS-WAFQLARQLMQKEGLR 2
           AL++AYSR ++  S +A  L  Q M+ +G+R
Sbjct: 334 ALLAAYSRLSQYYSIYALNLYTQ-MEYKGIR 363


>ref|XP_004301858.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g50420-like [Fragaria vesca subsp. vesca]
          Length = 704

 Score = 86.7 bits (213), Expect = 3e-15
 Identities = 40/83 (48%), Positives = 61/83 (73%)
 Frame = -3

Query: 271 ITSIRKARELHALILTSAAAIQENPYAFNNILSMYARCGSLMDSQLVFDKMSERNIVSYN 92
           ITS+R+AR +H+L+LT+      + Y +NN+LSMYARCGS+ D++ VFD+M +R++VS+N
Sbjct: 18  ITSLREARRIHSLLLTTTTVGSRSVYMYNNVLSMYARCGSVGDARKVFDEMPQRSVVSFN 77

Query: 91  ALISAYSRSNKMVSWAFQLARQL 23
           AL + YSRS +    A  L ++L
Sbjct: 78  ALAAGYSRSAETAGLALGLLKKL 100


>ref|XP_003611834.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355513169|gb|AES94792.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 985

 Score = 86.3 bits (212), Expect = 4e-15
 Identities = 48/91 (52%), Positives = 68/91 (74%), Gaps = 2/91 (2%)
 Frame = -3

Query: 268 TSIRKARELHALILTSA-AAIQENPYAFNNILSMYARCGSLMDSQLVFDKMSERNIVSYN 92
           TS+++AR+LHAL+LT+  A+  ++ + +NNI+SMY+RCGSL D+  VFDKM +R  VSYN
Sbjct: 293 TSLQEARQLHALLLTTTNASGSKSAFLYNNIISMYSRCGSLEDAHQVFDKMPQRTHVSYN 352

Query: 91  ALISAYSR-SNKMVSWAFQLARQLMQKEGLR 2
           AL++AYSR S +   +AF L  Q M+  GLR
Sbjct: 353 ALLAAYSRVSEQHCVYAFNLYTQ-MENMGLR 382


>ref|XP_002522354.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223538432|gb|EEF40038.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 704

 Score = 83.2 bits (204), Expect = 3e-14
 Identities = 39/81 (48%), Positives = 60/81 (74%), Gaps = 2/81 (2%)
 Frame = -3

Query: 271 ITSIRKARELHALIL--TSAAAIQENPYAFNNILSMYARCGSLMDSQLVFDKMSERNIVS 98
           I S++KAR+LHALIL  T++ +  ++PY  NN+++MYA CGS  D+Q +FD+M  +N +S
Sbjct: 17  INSLKKARQLHALILATTASTSYAQSPYLNNNLIAMYAHCGSRSDAQKLFDRMPRKNAIS 76

Query: 97  YNALISAYSRSNKMVSWAFQL 35
           YNALI+AY R +   + +F+L
Sbjct: 77  YNALIAAYCRDSSYETLSFKL 97


>ref|XP_002877746.1| hypothetical protein ARALYDRAFT_906369 [Arabidopsis lyrata subsp.
           lyrata] gi|297323584|gb|EFH54005.1| hypothetical protein
           ARALYDRAFT_906369 [Arabidopsis lyrata subsp. lyrata]
          Length = 191

 Score = 78.2 bits (191), Expect = 1e-12
 Identities = 37/66 (56%), Positives = 54/66 (81%), Gaps = 1/66 (1%)
 Frame = -3

Query: 265 SIRKARELHALILTSAA-AIQENPYAFNNILSMYARCGSLMDSQLVFDKMSERNIVSYNA 89
           ++++AR+LHA+ILT+ A +  E+PYA NN++SMY RCGSL  ++ +F+KM ERN+VSYNA
Sbjct: 21  ALKQARQLHAIILTAGAGSASESPYANNNLISMYVRCGSLEQARKLFNKMPERNVVSYNA 80

Query: 88  LISAYS 71
           L S+ S
Sbjct: 81  LYSSES 86


>ref|XP_001754449.1| predicted protein [Physcomitrella patens]
           gi|162694551|gb|EDQ80899.1| predicted protein
           [Physcomitrella patens]
          Length = 723

 Score = 71.2 bits (173), Expect = 1e-10
 Identities = 36/71 (50%), Positives = 49/71 (69%)
 Frame = -3

Query: 271 ITSIRKARELHALILTSAAAIQENPYAFNNILSMYARCGSLMDSQLVFDKMSERNIVSYN 92
           + S+ + RE+HA IL S   IQ N Y  N +LSMYA+CGSL D++ VFD + +RNIVS+ 
Sbjct: 60  LRSLEQGREVHAAILKSG--IQPNRYLENTLLSMYAKCGSLTDARRVFDSIRDRNIVSWT 117

Query: 91  ALISAYSRSNK 59
           A+I A+   NK
Sbjct: 118 AMIEAFVAGNK 128


>ref|XP_006290722.1| hypothetical protein CARUB_v10016818mg [Capsella rubella]
           gi|482559429|gb|EOA23620.1| hypothetical protein
           CARUB_v10016818mg [Capsella rubella]
          Length = 648

 Score = 70.1 bits (170), Expect = 3e-10
 Identities = 33/62 (53%), Positives = 47/62 (75%), Gaps = 1/62 (1%)
 Frame = -3

Query: 268 TSIRKARELHALILTSAA-AIQENPYAFNNILSMYARCGSLMDSQLVFDKMSERNIVSYN 92
           T++++AR+LHAL+LT+ A A  E+PYA NN++SMY RCG L  ++ VFDKM +RNI+   
Sbjct: 21  TALKRARQLHALVLTAGAGAYSESPYANNNLISMYVRCGCLDQARKVFDKMPQRNIIKLG 80

Query: 91  AL 86
            L
Sbjct: 81  YL 82


>gb|AEB39774.1| pentatricopeptide repeat protein 65 [Funaria hygrometrica]
          Length = 771

 Score = 68.9 bits (167), Expect = 6e-10
 Identities = 35/71 (49%), Positives = 49/71 (69%)
 Frame = -3

Query: 271 ITSIRKARELHALILTSAAAIQENPYAFNNILSMYARCGSLMDSQLVFDKMSERNIVSYN 92
           + S+ + RE+HA IL S   IQ N Y  N +LSMYA+CGSL D++ VFD + +RNIVS+ 
Sbjct: 109 LRSLEQGREVHAAILKSG--IQPNRYLENTLLSMYAKCGSLTDARRVFDGIRDRNIVSWT 166

Query: 91  ALISAYSRSNK 59
           A+I A+   N+
Sbjct: 167 AMIEAFVAGNQ 177


>gb|EOY16117.1| Pentatricopeptide repeat (PPR) superfamily protein, putative
           [Theobroma cacao]
          Length = 620

 Score = 64.7 bits (156), Expect = 1e-08
 Identities = 31/68 (45%), Positives = 51/68 (75%), Gaps = 2/68 (2%)
 Frame = -3

Query: 265 SIRKARELHALILTSAAAIQENP--YAFNNILSMYARCGSLMDSQLVFDKMSERNIVSYN 92
           ++R+AR +HA++L       +NP  Y  NN++S+Y+R G LM+++ VFDKM+ERN+VS+ 
Sbjct: 104 NVRQARRVHAVVLKRL----KNPGTYVENNLISVYSRFGKLMEARKVFDKMAERNVVSWT 159

Query: 91  ALISAYSR 68
           A+I+ YS+
Sbjct: 160 AMINGYSK 167


>ref|XP_002867196.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297313032|gb|EFH43455.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 997

 Score = 64.7 bits (156), Expect = 1e-08
 Identities = 38/81 (46%), Positives = 57/81 (70%), Gaps = 6/81 (7%)
 Frame = -3

Query: 241 HALILTSAAAIQENPYAF--NNILSMYARCGSLMDSQLVFDKMSERNIVSYNALISAYSR 68
           HA IL    A++ENP  F  NN++SMY++CGSL  ++ VFDKM ER++VS+N++++AY++
Sbjct: 69  HARIL----ALEENPERFLVNNLISMYSKCGSLTYARRVFDKMPERDLVSWNSILAAYAQ 124

Query: 67  SN----KMVSWAFQLARQLMQ 17
           S+    + V  AF L R L Q
Sbjct: 125 SSEGVVENVKEAFLLFRILRQ 145