BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Catharanthus22_contig00047315
         (321 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAD17351.1| contains similarity to retrovirus-related polypro...    55   7e-06

>gb|AAD17351.1| contains similarity to retrovirus-related polyproteins and to CCHC
           zinc finger protein (Pfam: PF00098, Score=16.3, E=0.051,
           E= 1) [Arabidopsis thaliana] gi|7267432|emb|CAB77944.1|
           putative polyprotein [Arabidopsis thaliana]
          Length = 1138

 Score = 55.5 bits (132), Expect = 7e-06
 Identities = 28/56 (50%), Positives = 35/56 (62%)
 Frame = +2

Query: 41  SKGKEANKD*SKVEGAPSRARDVKCFKCNRYEHYASNCRTKKVMIIRPNGEVISKD 208
           SKGKE            +R RD+KCFKC+   HYAS C  K++MIIR +GEV S+D
Sbjct: 265 SKGKEKEV---------TRTRDLKCFKCHGLGHYASECSNKRIMIIRDSGEVESED 311