BLASTX nr result
ID: Catharanthus22_contig00046688
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Catharanthus22_contig00046688
(362 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|ADD31172.1| RNA polymerase beta' subunit protein [Ximenia ame... 71 1e-10
gb|ADD47689.1| RNA polymerase C [Desmodium styracifolium] gi|290... 69 5e-10
gb|ACN75513.1| RNA polymerase C [Drypetes variabilis] gi|2249875... 69 5e-10
gb|ACN75512.1| RNA polymerase C [Drypetes variabilis] 69 5e-10
gb|AFK10072.1| RNA polymerase beta' subunit, partial (chloroplas... 69 6e-10
gb|AEX94487.1| RNA polymerase beta (chloroplast) [Drimia altissima] 69 6e-10
gb|ADX90228.1| RNA polymerase beta' subunit protein, partial (ch... 69 6e-10
ref|YP_004940501.1| rpoC1 gene product (chloroplast) [Boea hygro... 69 6e-10
gb|ADT63257.1| RNA polymerase beta subunit [Linum perenne] 69 6e-10
ref|YP_008854585.1| RNA polymerase beta [Curcuma roscoeana] gi|5... 69 8e-10
gb|AGL97889.1| RNA polymerase C, partial (chloroplast) [Zingiber... 69 8e-10
gb|AGL97881.1| RNA polymerase C, partial (chloroplast) [Kaempfer... 69 8e-10
gb|AGL97877.1| RNA polymerase C, partial (chloroplast) [Amomum s... 69 8e-10
gb|AGL97874.1| RNA polymerase C, partial (chloroplast) [Alpinia ... 69 8e-10
gb|AGL97872.1| RNA polymerase C, partial (chloroplast) [Alpinia ... 69 8e-10
gb|AGL97871.1| RNA polymerase C, partial (chloroplast) [Alpinia ... 69 8e-10
gb|AFK10092.1| RNA polymerase beta' subunit, partial (chloroplas... 69 8e-10
gb|AFK10038.1| RNA polymerase beta' subunit, partial (chloroplas... 69 8e-10
gb|AGL45327.1| RpoC1 (chloroplast) [Sesamum indicum] 69 8e-10
ref|YP_007475695.1| RNA polymerase beta [Zingiber spectabile] gi... 69 8e-10
>gb|ADD31172.1| RNA polymerase beta' subunit protein [Ximenia americana]
Length = 682
Score = 71.2 bits (173), Expect = 1e-10
Identities = 35/54 (64%), Positives = 42/54 (77%), Gaps = 6/54 (11%)
Frame = -2
Query: 274 RGCPLL----PIME--GLHDWETILVEGPAICLHPLVCKGFNAEFDGDQMAVHV 131
+GCP+L P + G+ ++ ILVEG AICLHPLVCKGFNA+FDGDQMAVHV
Sbjct: 448 QGCPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHV 501
>gb|ADD47689.1| RNA polymerase C [Desmodium styracifolium]
gi|290584890|gb|ADD47690.1| RNA polymerase C [Desmodium
styracifolium] gi|290584892|gb|ADD47691.1| RNA
polymerase C [Desmodium styracifolium]
gi|290584894|gb|ADD47692.1| RNA polymerase C [Desmodium
styracifolium]
Length = 162
Score = 69.3 bits (168), Expect = 5e-10
Identities = 31/38 (81%), Positives = 34/38 (89%)
Frame = -2
Query: 244 GLHDWETILVEGPAICLHPLVCKGFNAEFDGDQMAVHV 131
G+ +E ILVEG AICLHPLVCKGFNA+FDGDQMAVHV
Sbjct: 94 GIQAFEPILVEGRAICLHPLVCKGFNADFDGDQMAVHV 131
>gb|ACN75513.1| RNA polymerase C [Drypetes variabilis] gi|224987529|gb|ACN75514.1|
RNA polymerase C [Drypetes variabilis]
gi|224987531|gb|ACN75515.1| RNA polymerase C [Drypetes
variabilis]
Length = 194
Score = 69.3 bits (168), Expect = 5e-10
Identities = 31/38 (81%), Positives = 34/38 (89%)
Frame = -2
Query: 244 GLHDWETILVEGPAICLHPLVCKGFNAEFDGDQMAVHV 131
G+ +E ILVEG AICLHPLVCKGFNA+FDGDQMAVHV
Sbjct: 125 GIQAFEPILVEGRAICLHPLVCKGFNADFDGDQMAVHV 162
>gb|ACN75512.1| RNA polymerase C [Drypetes variabilis]
Length = 194
Score = 69.3 bits (168), Expect = 5e-10
Identities = 31/38 (81%), Positives = 34/38 (89%)
Frame = -2
Query: 244 GLHDWETILVEGPAICLHPLVCKGFNAEFDGDQMAVHV 131
G+ +E ILVEG AICLHPLVCKGFNA+FDGDQMAVHV
Sbjct: 125 GIQAFEPILVEGRAICLHPLVCKGFNADFDGDQMAVHV 162
>gb|AFK10072.1| RNA polymerase beta' subunit, partial (chloroplast) [Mesua ferrea]
Length = 148
Score = 68.9 bits (167), Expect = 6e-10
Identities = 30/38 (78%), Positives = 34/38 (89%)
Frame = -2
Query: 244 GLHDWETILVEGPAICLHPLVCKGFNAEFDGDQMAVHV 131
G+ ++ ILVEG AICLHPLVCKGFNA+FDGDQMAVHV
Sbjct: 98 GIQSFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHV 135
>gb|AEX94487.1| RNA polymerase beta (chloroplast) [Drimia altissima]
Length = 685
Score = 68.9 bits (167), Expect = 6e-10
Identities = 30/38 (78%), Positives = 35/38 (92%)
Frame = -2
Query: 244 GLHDWETILVEGPAICLHPLVCKGFNAEFDGDQMAVHV 131
G+ +++ILVEG AICLHPLVCKGFNA+FDGDQMAVHV
Sbjct: 465 GIQAFQSILVEGRAICLHPLVCKGFNADFDGDQMAVHV 502
>gb|ADX90228.1| RNA polymerase beta' subunit protein, partial (chloroplast)
[Valeriana nivalis]
Length = 196
Score = 68.9 bits (167), Expect = 6e-10
Identities = 30/38 (78%), Positives = 34/38 (89%)
Frame = -2
Query: 244 GLHDWETILVEGPAICLHPLVCKGFNAEFDGDQMAVHV 131
G+ +E +LVEG AICLHPLVCKGFNA+FDGDQMAVHV
Sbjct: 126 GIQAFEPVLVEGRAICLHPLVCKGFNADFDGDQMAVHV 163
>ref|YP_004940501.1| rpoC1 gene product (chloroplast) [Boea hygrometrica]
gi|340549398|gb|AEK53220.1| RNA polymerase beta
(chloroplast) [Boea hygrometrica]
Length = 691
Score = 68.9 bits (167), Expect = 6e-10
Identities = 30/38 (78%), Positives = 34/38 (89%)
Frame = -2
Query: 244 GLHDWETILVEGPAICLHPLVCKGFNAEFDGDQMAVHV 131
G+ +E +LVEG AICLHPLVCKGFNA+FDGDQMAVHV
Sbjct: 473 GIQAFEPVLVEGRAICLHPLVCKGFNADFDGDQMAVHV 510
>gb|ADT63257.1| RNA polymerase beta subunit [Linum perenne]
Length = 162
Score = 68.9 bits (167), Expect = 6e-10
Identities = 35/54 (64%), Positives = 41/54 (75%), Gaps = 6/54 (11%)
Frame = -2
Query: 274 RGCPLL----PIME--GLHDWETILVEGPAICLHPLVCKGFNAEFDGDQMAVHV 131
RG P+L P + G+ ++ ILVEG AICLHPLVCKGFNA+FDGDQMAVHV
Sbjct: 78 RGYPILLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHV 131
>ref|YP_008854585.1| RNA polymerase beta [Curcuma roscoeana] gi|557637492|gb|AHA13087.1|
RNA polymerase beta [Curcuma roscoeana]
Length = 684
Score = 68.6 bits (166), Expect = 8e-10
Identities = 30/38 (78%), Positives = 34/38 (89%)
Frame = -2
Query: 244 GLHDWETILVEGPAICLHPLVCKGFNAEFDGDQMAVHV 131
G+ ++ ILVEG AICLHPLVCKGFNA+FDGDQMAVHV
Sbjct: 462 GIQAFQPILVEGSAICLHPLVCKGFNADFDGDQMAVHV 499
>gb|AGL97889.1| RNA polymerase C, partial (chloroplast) [Zingiber montanum]
Length = 176
Score = 68.6 bits (166), Expect = 8e-10
Identities = 30/38 (78%), Positives = 34/38 (89%)
Frame = -2
Query: 244 GLHDWETILVEGPAICLHPLVCKGFNAEFDGDQMAVHV 131
G+ ++ ILVEG AICLHPLVCKGFNA+FDGDQMAVHV
Sbjct: 127 GIQAFQPILVEGSAICLHPLVCKGFNADFDGDQMAVHV 164
>gb|AGL97881.1| RNA polymerase C, partial (chloroplast) [Kaempferia galanga]
Length = 175
Score = 68.6 bits (166), Expect = 8e-10
Identities = 30/38 (78%), Positives = 34/38 (89%)
Frame = -2
Query: 244 GLHDWETILVEGPAICLHPLVCKGFNAEFDGDQMAVHV 131
G+ ++ ILVEG AICLHPLVCKGFNA+FDGDQMAVHV
Sbjct: 126 GIQAFQPILVEGSAICLHPLVCKGFNADFDGDQMAVHV 163
>gb|AGL97877.1| RNA polymerase C, partial (chloroplast) [Amomum subulatum]
Length = 177
Score = 68.6 bits (166), Expect = 8e-10
Identities = 30/38 (78%), Positives = 34/38 (89%)
Frame = -2
Query: 244 GLHDWETILVEGPAICLHPLVCKGFNAEFDGDQMAVHV 131
G+ ++ ILVEG AICLHPLVCKGFNA+FDGDQMAVHV
Sbjct: 128 GIQAFQPILVEGSAICLHPLVCKGFNADFDGDQMAVHV 165
>gb|AGL97874.1| RNA polymerase C, partial (chloroplast) [Alpinia sp. ZSA07]
Length = 177
Score = 68.6 bits (166), Expect = 8e-10
Identities = 30/38 (78%), Positives = 34/38 (89%)
Frame = -2
Query: 244 GLHDWETILVEGPAICLHPLVCKGFNAEFDGDQMAVHV 131
G+ ++ ILVEG AICLHPLVCKGFNA+FDGDQMAVHV
Sbjct: 127 GIQAFQPILVEGSAICLHPLVCKGFNADFDGDQMAVHV 164
>gb|AGL97872.1| RNA polymerase C, partial (chloroplast) [Alpinia sp. ZSA05]
gi|505580726|gb|AGL97875.1| RNA polymerase C, partial
(chloroplast) [Alpinia sp. ZSA08]
Length = 177
Score = 68.6 bits (166), Expect = 8e-10
Identities = 30/38 (78%), Positives = 34/38 (89%)
Frame = -2
Query: 244 GLHDWETILVEGPAICLHPLVCKGFNAEFDGDQMAVHV 131
G+ ++ ILVEG AICLHPLVCKGFNA+FDGDQMAVHV
Sbjct: 127 GIQAFQPILVEGSAICLHPLVCKGFNADFDGDQMAVHV 164
>gb|AGL97871.1| RNA polymerase C, partial (chloroplast) [Alpinia nigra]
Length = 177
Score = 68.6 bits (166), Expect = 8e-10
Identities = 30/38 (78%), Positives = 34/38 (89%)
Frame = -2
Query: 244 GLHDWETILVEGPAICLHPLVCKGFNAEFDGDQMAVHV 131
G+ ++ ILVEG AICLHPLVCKGFNA+FDGDQMAVHV
Sbjct: 127 GIQAFQPILVEGSAICLHPLVCKGFNADFDGDQMAVHV 164
>gb|AFK10092.1| RNA polymerase beta' subunit, partial (chloroplast) [Sesamum
indicum]
Length = 145
Score = 68.6 bits (166), Expect = 8e-10
Identities = 29/38 (76%), Positives = 34/38 (89%)
Frame = -2
Query: 244 GLHDWETILVEGPAICLHPLVCKGFNAEFDGDQMAVHV 131
G+ ++ +LVEG AICLHPLVCKGFNA+FDGDQMAVHV
Sbjct: 96 GIQSFQPVLVEGRAICLHPLVCKGFNADFDGDQMAVHV 133
>gb|AFK10038.1| RNA polymerase beta' subunit, partial (chloroplast) [Bougainvillea
spectabilis]
Length = 145
Score = 68.6 bits (166), Expect = 8e-10
Identities = 30/38 (78%), Positives = 34/38 (89%)
Frame = -2
Query: 244 GLHDWETILVEGPAICLHPLVCKGFNAEFDGDQMAVHV 131
G+ ++ ILVEG AICLHPLVCKGFNA+FDGDQMAVHV
Sbjct: 96 GIQAFQAILVEGRAICLHPLVCKGFNADFDGDQMAVHV 133
>gb|AGL45327.1| RpoC1 (chloroplast) [Sesamum indicum]
Length = 687
Score = 68.6 bits (166), Expect = 8e-10
Identities = 29/38 (76%), Positives = 34/38 (89%)
Frame = -2
Query: 244 GLHDWETILVEGPAICLHPLVCKGFNAEFDGDQMAVHV 131
G+ ++ +LVEG AICLHPLVCKGFNA+FDGDQMAVHV
Sbjct: 469 GIQSFQPVLVEGRAICLHPLVCKGFNADFDGDQMAVHV 506
>ref|YP_007475695.1| RNA polymerase beta [Zingiber spectabile]
gi|449326175|gb|AGE92760.1| RNA polymerase beta
[Zingiber spectabile]
Length = 684
Score = 68.6 bits (166), Expect = 8e-10
Identities = 30/38 (78%), Positives = 34/38 (89%)
Frame = -2
Query: 244 GLHDWETILVEGPAICLHPLVCKGFNAEFDGDQMAVHV 131
G+ ++ ILVEG AICLHPLVCKGFNA+FDGDQMAVHV
Sbjct: 462 GIQAFQPILVEGSAICLHPLVCKGFNADFDGDQMAVHV 499