BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Catharanthus22_contig00045736
         (325 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABD28627.2| RNA-directed DNA polymerase (Reverse transcriptas...    92   7e-17
emb|CCA66009.1| hypothetical protein [Beta vulgaris subsp. vulga...    82   5e-16
emb|CAB10337.1| reverse transcriptase like protein [Arabidopsis ...    89   6e-16
gb|AAF23831.1|AC007234_3 F1E22.12 [Arabidopsis thaliana]               89   8e-16
gb|ABO80459.1| RNA-directed DNA polymerase (Reverse transcriptas...    88   1e-15
emb|CCA65997.1| hypothetical protein [Beta vulgaris subsp. vulga...    86   4e-15
gb|EOX94732.1| Uncharacterized protein TCM_004344 [Theobroma cacao]    80   1e-14
ref|XP_004306191.1| PREDICTED: putative ribonuclease H protein A...    80   2e-14
gb|EMJ18520.1| hypothetical protein PRUPE_ppa019733mg [Prunus pe...    84   3e-14
gb|EMJ04651.1| hypothetical protein PRUPE_ppa022115mg [Prunus pe...    84   3e-14
gb|AAC63844.1| putative non-LTR retroelement reverse transcripta...    84   3e-14
ref|XP_004289367.1| PREDICTED: putative ribonuclease H protein A...    83   3e-14
gb|AAC26674.1| putative non-LTR retroelement reverse transcripta...    83   3e-14
gb|EEC81735.1| hypothetical protein OsI_25376 [Oryza sativa Indi...    83   4e-14
gb|EMJ26294.1| hypothetical protein PRUPE_ppa016563mg, partial [...    82   7e-14
gb|AFP55574.1| non-ltr retroelement reverse transcriptase [Rosa ...    80   9e-14
gb|AAM18736.1|AC092548_14 putative reverse transcriptase [Oryza ...    82   1e-13
gb|EEE50824.1| hypothetical protein OsJ_31232 [Oryza sativa Japo...    82   1e-13
gb|AAP53315.2| retrotransposon protein, putative, unclassified [...    82   1e-13
ref|XP_006490008.1| PREDICTED: uncharacterized protein LOC102624...    81   1e-13

>gb|ABD28627.2| RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease H
           [Medicago truncatula]
          Length = 1296

 Score = 92.0 bits (227), Expect = 7e-17
 Identities = 44/84 (52%), Positives = 59/84 (70%), Gaps = 1/84 (1%)
 Frame = +2

Query: 71  KKGRMAIKLDEEKAYDSISWSFLNEVPIAVGFEDSMIALIMFCVTSILLSVLWNGEKLIS 250
           KKG +A KLD EKA+D+++W FLN   +  GF D ++ LIM CV+S   S+LWNG K+  
Sbjct: 569 KKGYVAFKLDLEKAFDNVNWDFLNSCLLDFGFPDIIVKLIMHCVSSANYSLLWNGNKMPP 628

Query: 251 FQPERGLRQGDALSSYL-LCCVQK 319
           F+P  GLRQGD LS YL + C++K
Sbjct: 629 FKPTHGLRQGDPLSPYLFILCMEK 652


>emb|CCA66009.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1378

 Score = 81.6 bits (200), Expect(2) = 5e-16
 Identities = 38/87 (43%), Positives = 58/87 (66%), Gaps = 1/87 (1%)
 Frame = +2

Query: 62  RRWKKGRMAIKLDEEKAYDSISWSFLNEVPIAVGFEDSMIALIMFCVTSILLSVLWNGEK 241
           ++ KKG MA+K+D EKAYD + W+F+ E  + +     ++ ++M CV+S  L +LWNGE 
Sbjct: 570 KQGKKGFMAVKIDFEKAYDRLRWTFIRESLMELRIPQHLVDIVMNCVSSANLQILWNGEP 629

Query: 242 LISFQPERGLRQGDALSSYL-LCCVQK 319
           +    P RGLRQGD LS YL + C+++
Sbjct: 630 MEKICPTRGLRQGDPLSPYLYVICMER 656



 Score = 28.1 bits (61), Expect(2) = 5e-16
 Identities = 16/32 (50%), Positives = 18/32 (56%), Gaps = 8/32 (25%)
 Frame = +3

Query: 9   QCSFVSGRQGIHNVLIVEE--------DGKKG 80
           QCSFV  RQ   NV+IV+E         GKKG
Sbjct: 544 QCSFVPNRQITDNVIIVQEMFHSMRNKQGKKG 575


>emb|CAB10337.1| reverse transcriptase like protein [Arabidopsis thaliana]
           gi|7268307|emb|CAB78601.1| reverse transcriptase like
           protein [Arabidopsis thaliana]
          Length = 929

 Score = 89.0 bits (219), Expect = 6e-16
 Identities = 45/87 (51%), Positives = 57/87 (65%), Gaps = 1/87 (1%)
 Frame = +2

Query: 62  RRWKKGRMAIKLDEEKAYDSISWSFLNEVPIAVGFEDSMIALIMFCVTSILLSVLWNGEK 241
           ++ +KG M +KLD EKAYD I W FL E   A G  +  I  IM CV    +S+LWNGEK
Sbjct: 379 KKGRKGWMLLKLDLEKAYDRIRWDFLAETLEAAGLSEGWIKRIMECVAGPEMSLLWNGEK 438

Query: 242 LISFQPERGLRQGDALSSYL-LCCVQK 319
             SF PERGLRQGD +S YL + C+++
Sbjct: 439 TDSFTPERGLRQGDPISPYLFVLCIER 465


>gb|AAF23831.1|AC007234_3 F1E22.12 [Arabidopsis thaliana]
          Length = 1055

 Score = 88.6 bits (218), Expect = 8e-16
 Identities = 43/87 (49%), Positives = 59/87 (67%), Gaps = 1/87 (1%)
 Frame = +2

Query: 62  RRWKKGRMAIKLDEEKAYDSISWSFLNEVPIAVGFEDSMIALIMFCVTSILLSVLWNGEK 241
           ++  KG M +KLD EKAYD I W FL++  +A GF +  +  IM CV+   +S+LWNGEK
Sbjct: 4   KKGSKGWMLLKLDLEKAYDRIRWDFLSDTLVAAGFSEVWVTWIMQCVSGPDMSLLWNGEK 63

Query: 242 LISFQPERGLRQGDALSSYL-LCCVQK 319
              F+P RGLRQGD LS YL + C+++
Sbjct: 64  TTPFKPLRGLRQGDLLSPYLFVLCMER 90


>gb|ABO80459.1| RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease H
           [Medicago truncatula]
          Length = 869

 Score = 87.8 bits (216), Expect = 1e-15
 Identities = 45/84 (53%), Positives = 54/84 (64%), Gaps = 1/84 (1%)
 Frame = +2

Query: 71  KKGRMAIKLDEEKAYDSISWSFLNEVPIAVGFEDSMIALIMFCVTSILLSVLWNGEKLIS 250
           KKG +A KLD EKA+D+++W FL       GF D  I LIM CVTS   SVLWNG K   
Sbjct: 129 KKGYVAFKLDLEKAFDNVNWEFLRSCLQDFGFPDDTIKLIMHCVTSSTFSVLWNGNKWPP 188

Query: 251 FQPERGLRQGDALSSYL-LCCVQK 319
            +P  GLRQGD LS YL + C++K
Sbjct: 189 IKPTHGLRQGDPLSPYLFIICMEK 212


>emb|CCA65997.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1363

 Score = 86.3 bits (212), Expect = 4e-15
 Identities = 40/84 (47%), Positives = 57/84 (67%), Gaps = 1/84 (1%)
 Frame = +2

Query: 71  KKGRMAIKLDEEKAYDSISWSFLNEVPIAVGFEDSMIALIMFCVTSILLSVLWNGEKLIS 250
           K+  MA+K+D  KAYDS+ W F+ E      F  S+IALIM C++S  +S++WNGE   S
Sbjct: 571 KRNIMALKIDLSKAYDSLEWGFIRETLQGFNFPQSLIALIMDCISSPAISLIWNGEVTQS 630

Query: 251 FQPERGLRQGDALSSYL-LCCVQK 319
           F P RG+RQGD LS Y+ + C+++
Sbjct: 631 FSPSRGIRQGDPLSPYIFVLCMER 654


>gb|EOX94732.1| Uncharacterized protein TCM_004344 [Theobroma cacao]
          Length = 421

 Score = 79.7 bits (195), Expect(2) = 1e-14
 Identities = 39/88 (44%), Positives = 58/88 (65%), Gaps = 1/88 (1%)
 Frame = +2

Query: 59  GRRWKKGRMAIKLDEEKAYDSISWSFLNEVPIAVGFEDSMIALIMFCVTSILLSVLWNGE 238
           G + ++  MAIK+D EK YD + W FL +V + +GF    I+LI++ V +   SV+WNG+
Sbjct: 181 GMKRRERAMAIKIDLEKDYDRLKWYFLQDVLVEIGFPPQWISLIVYIVRTPFFSVIWNGK 240

Query: 239 KLISFQPERGLRQGDALSSYL-LCCVQK 319
           +   F P RG+RQGD LSS L + C++K
Sbjct: 241 QSQKFNPFRGIRQGDPLSSSLFVLCLEK 268



 Score = 25.0 bits (53), Expect(2) = 1e-14
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +3

Query: 9   QCSFVSGRQGIHNVLIVEE 65
           Q SF+  RQ I NV++V+E
Sbjct: 156 QSSFIPRRQAIDNVIVVQE 174


>ref|XP_004306191.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Fragaria
           vesca subsp. vesca]
          Length = 755

 Score = 79.7 bits (195), Expect(2) = 2e-14
 Identities = 39/80 (48%), Positives = 53/80 (66%)
 Frame = +2

Query: 62  RRWKKGRMAIKLDEEKAYDSISWSFLNEVPIAVGFEDSMIALIMFCVTSILLSVLWNGEK 241
           R  + G  A+KLD  KAYD I WSFL  V + +GF    ++LI  C++++ LSVL NG+ 
Sbjct: 36  RSSESGSFALKLDMNKAYDRIEWSFLEAVLLKMGFAGRWVSLIKQCISTVSLSVLVNGKP 95

Query: 242 LISFQPERGLRQGDALSSYL 301
            + F+P RGLRQGD LS +L
Sbjct: 96  GVFFKPSRGLRQGDPLSPFL 115



 Score = 24.3 bits (51), Expect(2) = 2e-14
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +3

Query: 3  EQQCSFVSGRQGIHNVLIVEE 65
          E Q +FVSGRQ   N+++  E
Sbjct: 7  ENQSAFVSGRQIQDNIIVAHE 27


>gb|EMJ18520.1| hypothetical protein PRUPE_ppa019733mg [Prunus persica]
          Length = 1275

 Score = 83.6 bits (205), Expect = 3e-14
 Identities = 42/88 (47%), Positives = 56/88 (63%), Gaps = 1/88 (1%)
 Frame = +2

Query: 62  RRWKKGRMAIKLDEEKAYDSISWSFLNEVPIAVGFEDSMIALIMFCVTSILLSVLWNGEK 241
           RR +KG +A+KLD  KAYD + W FL ++ +A+GF    + ++M CVT++  S L NGE 
Sbjct: 528 RRGRKGSLALKLDMSKAYDRVEWEFLEKMMLAMGFPILWVRMVMDCVTTVSYSFLVNGEP 587

Query: 242 LISFQPERGLRQGDALSSYL-LCCVQKF 322
                P RGLRQGD LS YL L C + F
Sbjct: 588 TRILYPTRGLRQGDPLSPYLFLLCAEGF 615


>gb|EMJ04651.1| hypothetical protein PRUPE_ppa022115mg [Prunus persica]
          Length = 1755

 Score = 83.6 bits (205), Expect = 3e-14
 Identities = 42/88 (47%), Positives = 56/88 (63%), Gaps = 1/88 (1%)
 Frame = +2

Query: 62   RRWKKGRMAIKLDEEKAYDSISWSFLNEVPIAVGFEDSMIALIMFCVTSILLSVLWNGEK 241
            RR +KG +A+KLD  KAYD + W FL ++ +A+GF    + ++M CVT++  S L NGE 
Sbjct: 982  RRGRKGSLALKLDMSKAYDRVEWEFLEKMMLAMGFPILWVRMVMDCVTTVSYSFLVNGEP 1041

Query: 242  LISFQPERGLRQGDALSSYL-LCCVQKF 322
                 P RGLRQGD LS YL L C + F
Sbjct: 1042 TRILYPTRGLRQGDPLSPYLFLLCAEGF 1069


>gb|AAC63844.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 1231

 Score = 83.6 bits (205), Expect = 3e-14
 Identities = 43/87 (49%), Positives = 56/87 (64%), Gaps = 1/87 (1%)
 Frame = +2

Query: 62  RRWKKGRMAIKLDEEKAYDSISWSFLNEVPIAVGFEDSMIALIMFCVTSILLSVLWNGEK 241
           ++ +KG M +KLD EKAYD + W FL E   A G  +   + IM  VT   +SVLWNGE+
Sbjct: 427 KKGRKGWMLLKLDLEKAYDRVRWDFLQETLEAAGLSEGWTSRIMAGVTDPSMSVLWNGER 486

Query: 242 LISFQPERGLRQGDALSSYL-LCCVQK 319
             SF P RGLRQGD LS YL + C+++
Sbjct: 487 TDSFVPARGLRQGDPLSPYLFVLCLER 513


>ref|XP_004289367.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Fragaria
           vesca subsp. vesca]
          Length = 1152

 Score = 83.2 bits (204), Expect = 3e-14
 Identities = 43/91 (47%), Positives = 54/91 (59%), Gaps = 1/91 (1%)
 Frame = +2

Query: 47  CFDCGRRWKKGRMAIKLDEEKAYDSISWSFLNEVPIAVGFEDSMIALIMFCVTSILLSVL 226
           C  C R  K G  A+KLD  KAYD + W FL +V   +GF D+ +  IM C+T++  S L
Sbjct: 317 CLKCRRSGKVGLCALKLDMSKAYDRVEWCFLEKVLGKLGFGDTFVRWIMHCITTVSYSFL 376

Query: 227 WNGEKLISFQPERGLRQGDALSSYL-LCCVQ 316
            NGE      P RGLRQGDA+S YL L C +
Sbjct: 377 VNGEPCGKLIPTRGLRQGDAISPYLFLLCAE 407


>gb|AAC26674.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 970

 Score = 83.2 bits (204), Expect = 3e-14
 Identities = 44/87 (50%), Positives = 56/87 (64%), Gaps = 1/87 (1%)
 Frame = +2

Query: 62  RRWKKGRMAIKLDEEKAYDSISWSFLNEVPIAVGFEDSMIALIMFCVTSILLSVLWNGEK 241
           ++ +KG M +KLD EKAYD I W+FL E  +A G  +     IM  VT   +SVLWNG K
Sbjct: 277 KKGRKGWMLLKLDLEKAYDRIRWNFLQETLVATGLSEVWTHRIMAGVTDPSMSVLWNGGK 336

Query: 242 LISFQPERGLRQGDALSSYL-LCCVQK 319
             SF P RGLRQGD LS YL + C+++
Sbjct: 337 TDSFVPARGLRQGDPLSPYLFVLCLER 363


>gb|EEC81735.1| hypothetical protein OsI_25376 [Oryza sativa Indica Group]
          Length = 235

 Score = 82.8 bits (203), Expect = 4e-14
 Identities = 44/88 (50%), Positives = 54/88 (61%), Gaps = 1/88 (1%)
 Frame = +2

Query: 62  RRWKKGRMAIKLDEEKAYDSISWSFLNEVPIAVGFEDSMIALIMFCVTSILLSVLWNGEK 241
           R+ K G  AIKLD  KAYD + W FL E+ + +GF++    LIM CVTS+   +  NGE 
Sbjct: 9   RKGKLGYAAIKLDMSKAYDRVEWHFLREMMLRLGFDEGWTNLIMQCVTSVSYRIKVNGEL 68

Query: 242 LISFQPERGLRQGDALSSYL-LCCVQKF 322
              F P RGLRQGD LS YL L C + F
Sbjct: 69  TDVFHPGRGLRQGDPLSPYLFLLCAEGF 96


>gb|EMJ26294.1| hypothetical protein PRUPE_ppa016563mg, partial [Prunus persica]
          Length = 925

 Score = 82.0 bits (201), Expect = 7e-14
 Identities = 41/86 (47%), Positives = 55/86 (63%), Gaps = 1/86 (1%)
 Frame = +2

Query: 62  RRWKKGRMAIKLDEEKAYDSISWSFLNEVPIAVGFEDSMIALIMFCVTSILLSVLWNGEK 241
           RR +KG +A+KLD  KAYD + W FL ++ +A+GF    + ++M CVT++  S L NGE 
Sbjct: 163 RRGRKGSLALKLDMSKAYDRVEWEFLEKMMLAMGFPILWVRMVMDCVTTVSYSFLVNGEP 222

Query: 242 LISFQPERGLRQGDALSSYL-LCCVQ 316
                P RGLRQGD LS YL L C +
Sbjct: 223 TRILYPTRGLRQGDPLSPYLFLLCAE 248


>gb|AFP55574.1| non-ltr retroelement reverse transcriptase [Rosa rugosa]
          Length = 1656

 Score = 80.5 bits (197), Expect(2) = 9e-14
 Identities = 43/84 (51%), Positives = 51/84 (60%)
 Frame = +2

Query: 62   RRWKKGRMAIKLDEEKAYDSISWSFLNEVPIAVGFEDSMIALIMFCVTSILLSVLWNGEK 241
            R    G   +KLD  KAYD + W+FL  V   +GF DS I L+M CVT+  LSVL NG+ 
Sbjct: 1173 RSCNNGAFGLKLDMNKAYDRVEWNFLEAVLRKMGFVDSWIGLVMSCVTTSSLSVLINGKP 1232

Query: 242  LISFQPERGLRQGDALSSYLLCCV 313
              SF P RGLRQGD LS +L   V
Sbjct: 1233 GPSFLPSRGLRQGDPLSPFLFLFV 1256



 Score = 21.6 bits (44), Expect(2) = 9e-14
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +3

Query: 3    EQQCSFVSGRQGIHNVLIVEE 65
            + Q +FVS RQ   NV+I  E
Sbjct: 1144 DNQSAFVSNRQIQDNVIIAHE 1164


>gb|AAM18736.1|AC092548_14 putative reverse transcriptase [Oryza sativa Japonica Group]
          Length = 1509

 Score = 81.6 bits (200), Expect = 1e-13
 Identities = 42/88 (47%), Positives = 55/88 (62%), Gaps = 1/88 (1%)
 Frame = +2

Query: 62   RRWKKGRMAIKLDEEKAYDSISWSFLNEVPIAVGFEDSMIALIMFCVTSILLSVLWNGEK 241
            R  + G  A KLD  KAYD + WSFL+++ + +GF    + LIM CV+++   +  NGE 
Sbjct: 765  RSGQVGYAAFKLDMSKAYDRVEWSFLHDMMLKLGFHTDWVNLIMKCVSTVTYRIRVNGEL 824

Query: 242  LISFQPERGLRQGDALSSYL-LCCVQKF 322
              SF PERGLRQGD LS YL L C + F
Sbjct: 825  SESFSPERGLRQGDPLSPYLFLLCAEGF 852


>gb|EEE50824.1| hypothetical protein OsJ_31232 [Oryza sativa Japonica Group]
          Length = 1594

 Score = 81.6 bits (200), Expect = 1e-13
 Identities = 42/88 (47%), Positives = 55/88 (62%), Gaps = 1/88 (1%)
 Frame = +2

Query: 62   RRWKKGRMAIKLDEEKAYDSISWSFLNEVPIAVGFEDSMIALIMFCVTSILLSVLWNGEK 241
            R  + G  A KLD  KAYD + WSFL+++ + +GF    + LIM CV+++   +  NGE 
Sbjct: 793  RSGQVGYAAFKLDMSKAYDRVEWSFLHDMMLKLGFHTDWVNLIMKCVSTVTYRIRVNGEL 852

Query: 242  LISFQPERGLRQGDALSSYL-LCCVQKF 322
              SF PERGLRQGD LS YL L C + F
Sbjct: 853  SESFSPERGLRQGDPLSPYLFLLCAEGF 880


>gb|AAP53315.2| retrotransposon protein, putative, unclassified [Oryza sativa
            Japonica Group]
          Length = 1505

 Score = 81.6 bits (200), Expect = 1e-13
 Identities = 42/88 (47%), Positives = 55/88 (62%), Gaps = 1/88 (1%)
 Frame = +2

Query: 62   RRWKKGRMAIKLDEEKAYDSISWSFLNEVPIAVGFEDSMIALIMFCVTSILLSVLWNGEK 241
            R  + G  A KLD  KAYD + WSFL+++ + +GF    + LIM CV+++   +  NGE 
Sbjct: 761  RSGQVGYAAFKLDMSKAYDRVEWSFLHDMMLKLGFHTDWVNLIMKCVSTVTYRIRVNGEL 820

Query: 242  LISFQPERGLRQGDALSSYL-LCCVQKF 322
              SF PERGLRQGD LS YL L C + F
Sbjct: 821  SESFSPERGLRQGDPLSPYLFLLCAEGF 848


>ref|XP_006490008.1| PREDICTED: uncharacterized protein LOC102624085 [Citrus sinensis]
          Length = 1635

 Score = 81.3 bits (199), Expect = 1e-13
 Identities = 39/87 (44%), Positives = 58/87 (66%), Gaps = 1/87 (1%)
 Frame = +2

Query: 62   RRWKKGRMAIKLDEEKAYDSISWSFLNEVPIAVGFEDSMIALIMFCVTSILLSVLWNGEK 241
            ++ +KG MAIK+D  KAYD +SW+F+ E    +     +I LIM C+T+  ++VLWNGE 
Sbjct: 1060 KKGRKGFMAIKVDLGKAYDRLSWTFIQETLQELNLPTMLINLIMECITTATMNVLWNGEL 1119

Query: 242  LISFQPERGLRQGDALSSYL-LCCVQK 319
               F P RG+RQGD LS Y+ + C+++
Sbjct: 1120 SSEFCPGRGVRQGDPLSPYIFVLCIER 1146