BLASTX nr result
ID: Catharanthus22_contig00045226
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Catharanthus22_contig00045226
(280 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAA97099.1| retroelement pol polyprotein-like [Arabidopsis t... 86 5e-15
gb|AAD19784.1| putative retroelement pol polyprotein [Arabidopsi... 83 3e-14
dbj|BAB10743.1| retroelement pol polyprotein-like [Arabidopsis t... 81 2e-13
gb|AAG09097.1|AC009323_8 Putative retroelement polyprotein [Arab... 80 2e-13
emb|CAN82105.1| hypothetical protein VITISV_002577 [Vitis vinifera] 80 2e-13
gb|AAD23883.1| putative retroelement pol polyprotein [Arabidopsi... 80 2e-13
gb|AAD24600.1| putative retroelement pol polyprotein [Arabidopsi... 80 4e-13
emb|CAA18107.1| LTR retrotransposon like protein [Arabidopsis th... 79 6e-13
gb|AAG50751.1|AC079733_19 polyprotein, putative [Arabidopsis tha... 79 6e-13
gb|AAB87099.1| putative retroelement pol polyprotein [Arabidopsi... 79 8e-13
dbj|BAA97287.1| retroelement pol polyprotein-like [Arabidopsis t... 77 2e-12
gb|AAC67205.1| putative retroelement pol polyprotein [Arabidopsi... 77 2e-12
emb|CAN83378.1| hypothetical protein VITISV_011333 [Vitis vinifera] 77 3e-12
dbj|BAB10837.1| retroelement pol polyprotein-like [Arabidopsis t... 74 2e-11
emb|CAN76645.1| hypothetical protein VITISV_004685 [Vitis vinifera] 73 3e-11
gb|AAG51258.1|AC025782_3 Ty1/copia-element polyprotein [Arabidop... 72 6e-11
emb|CAN73272.1| hypothetical protein VITISV_013115 [Vitis vinifera] 72 6e-11
gb|EOY32323.1| Uncharacterized protein TCM_040108 [Theobroma cacao] 72 8e-11
emb|CAN82171.1| hypothetical protein VITISV_040546 [Vitis vinifera] 72 8e-11
emb|CAN74847.1| hypothetical protein VITISV_028741 [Vitis vinifera] 72 8e-11
>dbj|BAA97099.1| retroelement pol polyprotein-like [Arabidopsis thaliana]
Length = 1098
Score = 85.9 bits (211), Expect = 5e-15
Identities = 40/90 (44%), Positives = 56/90 (62%)
Frame = -2
Query: 270 QFLGQSFKFDS*DNFSICLRAKQIR*FFLASLNNAIAVFDLVHCDLCRPYKTPSFCSATY 91
+F S + + IC RAKQ R F SLN F+L+HCD+ PY+TP+ C + Y
Sbjct: 522 EFASSSSDLEIIKSCDICYRAKQAREVFSPSLNKTTVCFELIHCDVWGPYRTPASCGSVY 581
Query: 90 FLTVVDDYSRCV*IFLLTEKREVAQTLKKF 1
FLT+VDD+SR V FL+ EK EV++ ++ F
Sbjct: 582 FLTIVDDFSRSVWTFLMAEKSEVSRLIRNF 611
>gb|AAD19784.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1501
Score = 83.2 bits (204), Expect = 3e-14
Identities = 39/74 (52%), Positives = 47/74 (63%)
Frame = -2
Query: 222 ICLRAKQIR*FFLASLNNAIAVFDLVHCDLCRPYKTPSFCSATYFLTVVDDYSRCV*IFL 43
+C RAKQ R F S+N F L+HCD+ PY+ P+ C A YFLT+VDDYSR V +L
Sbjct: 562 VCFRAKQTREVFPESINKTEECFSLIHCDVWGPYRVPASCGAVYFLTIVDDYSRAVWTYL 621
Query: 42 LTEKREVAQTLKKF 1
L EK EV Q L F
Sbjct: 622 LLEKSEVRQVLTNF 635
>dbj|BAB10743.1| retroelement pol polyprotein-like [Arabidopsis thaliana]
Length = 1109
Score = 80.9 bits (198), Expect = 2e-13
Identities = 38/73 (52%), Positives = 51/73 (69%)
Frame = -2
Query: 219 CLRAKQIR*FFLASLNNAIAVFDLVHCDLCRPYKTPSFCSATYFLTVVDDYSRCV*IFLL 40
C+RAKQ R F S N ++ F L+HCD+ PY+TPS+ A YFLT+VDDYSR V ++L+
Sbjct: 326 CMRAKQTRDTFPLSDNRSMDSFQLIHCDVWGPYRTPSYSGARYFLTIVDDYSRGVWVYLM 385
Query: 39 TEKREVAQTLKKF 1
T+K E + LK F
Sbjct: 386 TDKSETQKHLKDF 398
>gb|AAG09097.1|AC009323_8 Putative retroelement polyprotein [Arabidopsis thaliana]
Length = 1486
Score = 80.5 bits (197), Expect = 2e-13
Identities = 43/85 (50%), Positives = 53/85 (62%)
Frame = -2
Query: 255 SFKFDS*DNFSICLRAKQIR*FFLASLNNAIAVFDLVHCDLCRPYKTPSFCSATYFLTVV 76
S FDS IC++AKQ R F S N F+LVHCDL PY+T S C + YFLT+V
Sbjct: 529 SSTFDS-KTCEICIQAKQTRDPFPLSSNKTSFAFELVHCDLWGPYRTTSICGSRYFLTLV 587
Query: 75 DDYSRCV*IFLLTEKREVAQTLKKF 1
DDYSR V ++LL K+E + LK F
Sbjct: 588 DDYSRAVWLYLLPSKQEAPKHLKNF 612
>emb|CAN82105.1| hypothetical protein VITISV_002577 [Vitis vinifera]
Length = 1109
Score = 80.5 bits (197), Expect = 2e-13
Identities = 40/74 (54%), Positives = 47/74 (63%)
Frame = -2
Query: 222 ICLRAKQIR*FFLASLNNAIAVFDLVHCDLCRPYKTPSFCSATYFLTVVDDYSRCV*IFL 43
IC RA+Q R F +S N A FDL+HCDL Y+ P+ C YFLT+VDD SR V I+L
Sbjct: 358 ICFRAQQTREMFFSSDNKAKECFDLIHCDLWGAYRVPASCGGIYFLTIVDDCSRAVWIYL 417
Query: 42 LTEKREVAQTLKKF 1
L K EVA LK F
Sbjct: 418 LNRKNEVACVLKNF 431
>gb|AAD23883.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1156
Score = 80.5 bits (197), Expect = 2e-13
Identities = 38/74 (51%), Positives = 46/74 (62%)
Frame = -2
Query: 222 ICLRAKQIR*FFLASLNNAIAVFDLVHCDLCRPYKTPSFCSATYFLTVVDDYSRCV*IFL 43
+C RAKQ R F S N +I F L+HCD+ PY+ PS C A YFLT+VDD+SR V +L
Sbjct: 123 VCFRAKQTREVFPVSTNKSIECFSLIHCDVWGPYRVPSSCGAVYFLTIVDDFSRAVWTYL 182
Query: 42 LTEKREVAQTLKKF 1
L K EV L F
Sbjct: 183 LLAKSEVRTVLTNF 196
>gb|AAD24600.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1333
Score = 79.7 bits (195), Expect = 4e-13
Identities = 37/74 (50%), Positives = 50/74 (67%)
Frame = -2
Query: 222 ICLRAKQIR*FFLASLNNAIAVFDLVHCDLCRPYKTPSFCSATYFLTVVDDYSRCV*IFL 43
+C RAKQ R F S+N + +F+L++CDL PY+TPS A YFLT++DDYSR V ++L
Sbjct: 425 VCHRAKQTRNSFPLSINKTLRIFELIYCDLWGPYRTPSHTGARYFLTIIDDYSRGVWLYL 484
Query: 42 LTEKREVAQTLKKF 1
L +K E LK F
Sbjct: 485 LNDKSEAPCHLKNF 498
>emb|CAA18107.1| LTR retrotransposon like protein [Arabidopsis thaliana]
gi|7269049|emb|CAB79159.1| LTR retrotransposon like
protein [Arabidopsis thaliana]
Length = 1109
Score = 79.0 bits (193), Expect = 6e-13
Identities = 37/73 (50%), Positives = 50/73 (68%)
Frame = -2
Query: 219 CLRAKQIR*FFLASLNNAIAVFDLVHCDLCRPYKTPSFCSATYFLTVVDDYSRCV*IFLL 40
C+RAKQ R F N ++ F L+HCD+ PY+TPS+ A YFLT+VDDYSR V ++L+
Sbjct: 326 CMRAKQTRDTFPLRDNRSMDSFQLIHCDVWGPYRTPSYSGARYFLTIVDDYSRGVWVYLM 385
Query: 39 TEKREVAQTLKKF 1
T+K E + LK F
Sbjct: 386 TDKSETQKHLKDF 398
>gb|AAG50751.1|AC079733_19 polyprotein, putative [Arabidopsis thaliana]
Length = 1468
Score = 79.0 bits (193), Expect = 6e-13
Identities = 37/73 (50%), Positives = 50/73 (68%)
Frame = -2
Query: 219 CLRAKQIR*FFLASLNNAIAVFDLVHCDLCRPYKTPSFCSATYFLTVVDDYSRCV*IFLL 40
C+RAKQ R F S N ++ F L+HCD+ PY+ PS+ A YFLT+VDDYSR V ++L+
Sbjct: 550 CMRAKQTRDTFPLSDNRSMDSFQLIHCDVWGPYRAPSYSGARYFLTIVDDYSRGVWVYLM 609
Query: 39 TEKREVAQTLKKF 1
T+K E + LK F
Sbjct: 610 TDKSETQKHLKDF 622
>gb|AAB87099.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1496
Score = 78.6 bits (192), Expect = 8e-13
Identities = 39/82 (47%), Positives = 51/82 (62%)
Frame = -2
Query: 246 FDS*DNFSICLRAKQIR*FFLASLNNAIAVFDLVHCDLCRPYKTPSFCSATYFLTVVDDY 67
FD D+ C R+KQ R F S N + F L+H D+ PY+TPS A YFLT+VDDY
Sbjct: 527 FDKIDSCDTCFRSKQTREVFPISNNKTMECFSLIHGDVWGPYRTPSTTGAVYFLTLVDDY 586
Query: 66 SRCV*IFLLTEKREVAQTLKKF 1
SR V +L++ K EV+Q +K F
Sbjct: 587 SRSVWTYLMSSKTEVSQLIKNF 608
>dbj|BAA97287.1| retroelement pol polyprotein-like [Arabidopsis thaliana]
Length = 1491
Score = 77.0 bits (188), Expect = 2e-12
Identities = 37/74 (50%), Positives = 45/74 (60%)
Frame = -2
Query: 222 ICLRAKQIR*FFLASLNNAIAVFDLVHCDLCRPYKTPSFCSATYFLTVVDDYSRCV*IFL 43
+C RAKQ R F S N + F L+HCD+ PY+ PS C A YFLT+VDD+SR V +L
Sbjct: 545 VCFRAKQTREVFPDSSNKSTDCFSLIHCDVWGPYRVPSSCGAVYFLTIVDDFSRSVWTYL 604
Query: 42 LTEKREVAQTLKKF 1
L K EV L F
Sbjct: 605 LLAKSEVRSVLTNF 618
>gb|AAC67205.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1413
Score = 77.0 bits (188), Expect = 2e-12
Identities = 37/74 (50%), Positives = 45/74 (60%)
Frame = -2
Query: 222 ICLRAKQIR*FFLASLNNAIAVFDLVHCDLCRPYKTPSFCSATYFLTVVDDYSRCV*IFL 43
+C RAKQ R F S N + F L+HCD+ PY+ PS C A YFLT+VDD+SR V +L
Sbjct: 545 VCFRAKQTREVFPDSSNKSTDCFSLIHCDVWGPYRVPSSCGAVYFLTIVDDFSRSVWTYL 604
Query: 42 LTEKREVAQTLKKF 1
L K EV L F
Sbjct: 605 LLAKSEVRSVLTNF 618
>emb|CAN83378.1| hypothetical protein VITISV_011333 [Vitis vinifera]
Length = 758
Score = 76.6 bits (187), Expect = 3e-12
Identities = 39/74 (52%), Positives = 46/74 (62%)
Frame = -2
Query: 222 ICLRAKQIR*FFLASLNNAIAVFDLVHCDLCRPYKTPSFCSATYFLTVVDDYSRCV*IFL 43
IC RA+Q R F +S N FDL+HCDL Y+ P+ C YFLT+VDD SR V I+L
Sbjct: 287 ICFRAQQTREVFFSSDNKVKECFDLIHCDLWGAYRVPTSCGGIYFLTIVDDCSRVVWIYL 346
Query: 42 LTEKREVAQTLKKF 1
L K EVA LK F
Sbjct: 347 LNGKDEVACVLKNF 360
>dbj|BAB10837.1| retroelement pol polyprotein-like [Arabidopsis thaliana]
Length = 1462
Score = 74.3 bits (181), Expect = 2e-11
Identities = 38/82 (46%), Positives = 51/82 (62%)
Frame = -2
Query: 246 FDS*DNFSICLRAKQIR*FFLASLNNAIAVFDLVHCDLCRPYKTPSFCSATYFLTVVDDY 67
FDS IC++AKQ R F S N + F++VHCDL PY+T S C + YFLT+VD+Y
Sbjct: 496 FDS-KTCEICIKAKQTRDPFPLSNNKTSSPFEMVHCDLWGPYRTTSICGSNYFLTLVDNY 554
Query: 66 SRCV*IFLLTEKREVAQTLKKF 1
+R V ++LL K+ LK F
Sbjct: 555 TRAVWLYLLPSKQTAPMHLKNF 576
>emb|CAN76645.1| hypothetical protein VITISV_004685 [Vitis vinifera]
Length = 1196
Score = 73.2 bits (178), Expect = 3e-11
Identities = 38/74 (51%), Positives = 45/74 (60%)
Frame = -2
Query: 222 ICLRAKQIR*FFLASLNNAIAVFDLVHCDLCRPYKTPSFCSATYFLTVVDDYSRCV*IFL 43
IC RAK R F S N A +F+ +HCDL YK S C A YFLT+VDD+SR V I+L
Sbjct: 427 ICFRAKHPRDKFPLSDNKATRIFEKIHCDLWGSYKHVSSCGARYFLTIVDDFSRAVWIYL 486
Query: 42 LTEKREVAQTLKKF 1
L +K EV Q F
Sbjct: 487 LVDKTEVFQMFMSF 500
>gb|AAG51258.1|AC025782_3 Ty1/copia-element polyprotein [Arabidopsis thaliana]
Length = 1152
Score = 72.4 bits (176), Expect = 6e-11
Identities = 37/74 (50%), Positives = 46/74 (62%)
Frame = -2
Query: 222 ICLRAKQIR*FFLASLNNAIAVFDLVHCDLCRPYKTPSFCSATYFLTVVDDYSRCV*IFL 43
+C+RAKQ R F S N A F +H D+ PYK S C A YFLT+VDD+SR V I L
Sbjct: 549 VCVRAKQTRASFSESFNKAEECFSFIHYDVWGPYKHASSCGAHYFLTIVDDHSRAVWIHL 608
Query: 42 LTEKREVAQTLKKF 1
+ K EVA L++F
Sbjct: 609 MLAKSEVASLLQQF 622
>emb|CAN73272.1| hypothetical protein VITISV_013115 [Vitis vinifera]
Length = 1178
Score = 72.4 bits (176), Expect = 6e-11
Identities = 37/74 (50%), Positives = 45/74 (60%)
Frame = -2
Query: 222 ICLRAKQIR*FFLASLNNAIAVFDLVHCDLCRPYKTPSFCSATYFLTVVDDYSRCV*IFL 43
IC RAK R F S N A +F+ +HCDL YK S C A YFLT+VDD+SR V I+L
Sbjct: 300 ICFRAKHXRDKFPLSDNKATRIFEKIHCDLWGSYKHVSSCGARYFLTIVDDFSRAVWIYL 359
Query: 42 LTEKREVAQTLKKF 1
L +K EV + F
Sbjct: 360 LVDKTEVFRMFMSF 373
>gb|EOY32323.1| Uncharacterized protein TCM_040108 [Theobroma cacao]
Length = 397
Score = 72.0 bits (175), Expect = 8e-11
Identities = 37/80 (46%), Positives = 47/80 (58%), Gaps = 2/80 (2%)
Frame = -2
Query: 234 DNF--SICLRAKQIR*FFLASLNNAIAVFDLVHCDLCRPYKTPSFCSATYFLTVVDDYSR 61
DNF + C RAKQ + FL N ++ F+L+HCD+ PY T SF A YFLT+VDDY+
Sbjct: 107 DNFFCNACCRAKQTKVHFLIHKNKSLLAFNLIHCDIWGPYHTTSFSRAHYFLTIVDDYNW 166
Query: 60 CV*IFLLTEKREVAQTLKKF 1
+FLL K E L F
Sbjct: 167 ATWVFLLKHKLETKNLLPYF 186
>emb|CAN82171.1| hypothetical protein VITISV_040546 [Vitis vinifera]
Length = 1129
Score = 72.0 bits (175), Expect = 8e-11
Identities = 37/74 (50%), Positives = 45/74 (60%)
Frame = -2
Query: 222 ICLRAKQIR*FFLASLNNAIAVFDLVHCDLCRPYKTPSFCSATYFLTVVDDYSRCV*IFL 43
IC RAK R F S N A +F+ +HCDL YK S C A YFLT+VDD+SR V I+L
Sbjct: 295 ICFRAKHPRDKFPLSDNKATRIFEKIHCDLWASYKHVSSCGARYFLTIVDDFSRAVWIYL 354
Query: 42 LTEKREVAQTLKKF 1
L +K EV + F
Sbjct: 355 LVDKTEVFRMFMSF 368
>emb|CAN74847.1| hypothetical protein VITISV_028741 [Vitis vinifera]
Length = 1262
Score = 72.0 bits (175), Expect = 8e-11
Identities = 37/74 (50%), Positives = 45/74 (60%)
Frame = -2
Query: 222 ICLRAKQIR*FFLASLNNAIAVFDLVHCDLCRPYKTPSFCSATYFLTVVDDYSRCV*IFL 43
IC RAK R F S N A +F+ +HCDL YK S C A YFLT+VDD+SR V I+L
Sbjct: 546 ICFRAKHPRDKFSLSDNKATRIFEKIHCDLWGSYKHVSSCGARYFLTIVDDFSRAVWIYL 605
Query: 42 LTEKREVAQTLKKF 1
L +K EV + F
Sbjct: 606 LVDKTEVFRMFMSF 619