BLASTX nr result
ID: Catharanthus22_contig00045106
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Catharanthus22_contig00045106
(262 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAF23831.1|AC007234_3 F1E22.12 [Arabidopsis thaliana] 100 3e-19
gb|ABW81175.1| non-LTR retrotransposon transposase [Arabidopsis ... 96 4e-18
ref|XP_004289445.1| PREDICTED: putative ribonuclease H protein A... 92 7e-17
gb|EMJ14411.1| hypothetical protein PRUPE_ppb013620mg [Prunus pe... 92 7e-17
dbj|BAE79384.1| unnamed protein product [Ipomoea batatas] 92 7e-17
ref|XP_006480844.1| PREDICTED: putative ribonuclease H protein A... 92 9e-17
gb|EOX92867.1| LINE-type retrotransposon LIb DNA, Insertion at t... 92 9e-17
gb|ABD28505.2| RNA-directed DNA polymerase (Reverse transcriptas... 91 2e-16
gb|EOY32757.1| Uncharacterized protein TCM_040787 [Theobroma cacao] 91 2e-16
dbj|BAE79385.1| unnamed protein product [Ipomoea batatas] 91 2e-16
dbj|BAE79382.1| unnamed protein product [Ipomoea batatas] 91 2e-16
gb|EOY02808.1| Uncharacterized protein TCM_017202 [Theobroma cacao] 89 6e-16
gb|EOY02376.1| LINE-type retrotransposon LIb DNA, Insertion at t... 89 6e-16
gb|AAC63844.1| putative non-LTR retroelement reverse transcripta... 89 6e-16
ref|XP_006490008.1| PREDICTED: uncharacterized protein LOC102624... 89 8e-16
gb|EOY11683.1| Uncharacterized protein TCM_026784 [Theobroma cacao] 87 2e-15
gb|ABO80459.1| RNA-directed DNA polymerase (Reverse transcriptas... 87 2e-15
emb|CCA66009.1| hypothetical protein [Beta vulgaris subsp. vulga... 83 3e-14
gb|ABD28627.2| RNA-directed DNA polymerase (Reverse transcriptas... 81 2e-13
emb|CCA65997.1| hypothetical protein [Beta vulgaris subsp. vulga... 80 3e-13
>gb|AAF23831.1|AC007234_3 F1E22.12 [Arabidopsis thaliana]
Length = 1055
Score = 99.8 bits (247), Expect = 3e-19
Identities = 49/86 (56%), Positives = 60/86 (69%)
Frame = +3
Query: 3 RGLRQGAPLIPYLFMLCMETLSLSIHRSVEEKQWKPINIGRQGPGVSHLFFADDLLLFGK 182
RGLRQG L PYLF+LCME L I RS+ KQWKPIN+ R GP +SH+ FADDL+LF +
Sbjct: 71 RGLRQGDLLSPYLFVLCMERLCHLIERSINAKQWKPINLSRGGPKLSHICFADDLILFAE 130
Query: 183 ASET*ARVIEEVLTSFCCEFGQKGSL 260
AS +++ VL +FC GQK SL
Sbjct: 131 ASVEQVQIVRRVLEAFCTASGQKVSL 156
>gb|ABW81175.1| non-LTR retrotransposon transposase [Arabidopsis cebennensis]
Length = 799
Score = 96.3 bits (238), Expect = 4e-18
Identities = 48/86 (55%), Positives = 60/86 (69%)
Frame = +3
Query: 3 RGLRQGAPLIPYLFMLCMETLSLSIHRSVEEKQWKPINIGRQGPGVSHLFFADDLLLFGK 182
RGLRQG PL PYLF+LC+E L I +V K+WKPI++ R GP +SH+ FADDL+LF +
Sbjct: 86 RGLRQGDPLSPYLFVLCLERLCHQIDLAVGTKEWKPISMSRGGPLLSHICFADDLILFAE 145
Query: 183 ASET*ARVIEEVLTSFCCEFGQKGSL 260
AS RV+ +VL FC GQK SL
Sbjct: 146 ASVAQIRVVRKVLEKFCIASGQKVSL 171
>ref|XP_004289445.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Fragaria
vesca subsp. vesca]
Length = 719
Score = 92.0 bits (227), Expect = 7e-17
Identities = 45/84 (53%), Positives = 57/84 (67%)
Frame = +3
Query: 3 RGLRQGAPLIPYLFMLCMETLSLSIHRSVEEKQWKPINIGRQGPGVSHLFFADDLLLFGK 182
RG+RQG PL PY+F+LCME LS I+ V+ WKP+ + GP VSHLFFADDL+LF +
Sbjct: 246 RGIRQGDPLSPYIFVLCMEKLSHLINSVVDMGYWKPVRASQSGPKVSHLFFADDLMLFAE 305
Query: 183 ASET*ARVIEEVLTSFCCEFGQKG 254
AS A +I++ L SFC G G
Sbjct: 306 ASPQQASIIKDCLDSFCDLSGLSG 329
>gb|EMJ14411.1| hypothetical protein PRUPE_ppb013620mg [Prunus persica]
Length = 993
Score = 92.0 bits (227), Expect = 7e-17
Identities = 46/81 (56%), Positives = 55/81 (67%)
Frame = +3
Query: 6 GLRQGAPLIPYLFMLCMETLSLSIHRSVEEKQWKPINIGRQGPGVSHLFFADDLLLFGKA 185
G+RQG PL PYLF+LC+E LS I +V+ K WKPI R GP VSHLFFADDL LF +A
Sbjct: 846 GIRQGDPLSPYLFVLCIEKLSHIIVDAVKRKLWKPIKTSRNGPSVSHLFFADDLALFAEA 905
Query: 186 SET*ARVIEEVLTSFCCEFGQ 248
+ ARV++ L FC GQ
Sbjct: 906 TPCQARVMKNCLDLFCSASGQ 926
>dbj|BAE79384.1| unnamed protein product [Ipomoea batatas]
Length = 1898
Score = 92.0 bits (227), Expect = 7e-17
Identities = 46/83 (55%), Positives = 58/83 (69%)
Frame = +3
Query: 3 RGLRQGAPLIPYLFMLCMETLSLSIHRSVEEKQWKPINIGRQGPGVSHLFFADDLLLFGK 182
RGLRQG PL+PYLF L ME L+ I V + WKP++I R G G+SHLFFADDL+LFG+
Sbjct: 1167 RGLRQGDPLVPYLFNLVMERLAHDIQTRVNARTWKPVHITRGGTGISHLFFADDLMLFGE 1226
Query: 183 ASET*ARVIEEVLTSFCCEFGQK 251
ASE A+++ + L SF G K
Sbjct: 1227 ASEHQAQIMFDCLDSFSDASGLK 1249
>ref|XP_006480844.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus
sinensis]
Length = 768
Score = 91.7 bits (226), Expect = 9e-17
Identities = 43/83 (51%), Positives = 56/83 (67%)
Frame = +3
Query: 3 RGLRQGAPLIPYLFMLCMETLSLSIHRSVEEKQWKPINIGRQGPGVSHLFFADDLLLFGK 182
RG+RQG PL PY+F+LC+E LS I++S+ + WKPI + R G +SHLFF DDLLLF +
Sbjct: 61 RGVRQGDPLSPYIFVLCVERLSHGIYQSIHQDHWKPIRLSRLGTPLSHLFFTDDLLLFAE 120
Query: 183 ASET*ARVIEEVLTSFCCEFGQK 251
A+ A+ I VL FC G K
Sbjct: 121 ATSGQAQCINSVLGDFCLSSGTK 143
>gb|EOX92867.1| LINE-type retrotransposon LIb DNA, Insertion at the S11 site-like
protein [Theobroma cacao]
Length = 780
Score = 91.7 bits (226), Expect = 9e-17
Identities = 45/83 (54%), Positives = 58/83 (69%)
Frame = +3
Query: 3 RGLRQGAPLIPYLFMLCMETLSLSIHRSVEEKQWKPINIGRQGPGVSHLFFADDLLLFGK 182
RG+RQG PL PYLF+LC+E LS +I+ +V + WKPI +GR P +SHLFFADDL+LF +
Sbjct: 681 RGVRQGDPLSPYLFVLCIERLSHAINIAVVQGLWKPIKLGRHYPLISHLFFADDLILFAE 740
Query: 183 ASET*ARVIEEVLTSFCCEFGQK 251
AS +I VL FC G+K
Sbjct: 741 ASVDQMEIINGVLGDFCACLGEK 763
>gb|ABD28505.2| RNA-directed DNA polymerase (Reverse transcriptase);
Polynucleotidyl transferase, Ribonuclease H fold
[Medicago truncatula]
Length = 729
Score = 90.9 bits (224), Expect = 2e-16
Identities = 46/83 (55%), Positives = 53/83 (63%)
Frame = +3
Query: 3 RGLRQGAPLIPYLFMLCMETLSLSIHRSVEEKQWKPINIGRQGPGVSHLFFADDLLLFGK 182
RG+RQG PL PYLF++CME LS I VE WKP+ GR GP +SHL FADDLLLF +
Sbjct: 61 RGIRQGDPLSPYLFVICMERLSHIIADQVEADYWKPMRAGRYGPPISHLLFADDLLLFAE 120
Query: 183 ASET*ARVIEEVLTSFCCEFGQK 251
AS A + L FC GQK
Sbjct: 121 ASIEQAHCVLHCLDMFCQSSGQK 143
>gb|EOY32757.1| Uncharacterized protein TCM_040787 [Theobroma cacao]
Length = 178
Score = 90.5 bits (223), Expect = 2e-16
Identities = 44/86 (51%), Positives = 58/86 (67%)
Frame = +3
Query: 3 RGLRQGAPLIPYLFMLCMETLSLSIHRSVEEKQWKPINIGRQGPGVSHLFFADDLLLFGK 182
RG+RQG PL PYLF+LC+ETLS ++ V WKP+ + +GP ++H+ FADDL+LFG+
Sbjct: 31 RGIRQGDPLSPYLFVLCLETLSQLVNEEVSLGNWKPLVVTTRGPYLTHVCFADDLMLFGE 90
Query: 183 ASET*ARVIEEVLTSFCCEFGQKGSL 260
AS + I VL FC GQK SL
Sbjct: 91 ASVKQVQTIMRVLDKFCLASGQKVSL 116
>dbj|BAE79385.1| unnamed protein product [Ipomoea batatas]
Length = 1366
Score = 90.5 bits (223), Expect = 2e-16
Identities = 46/83 (55%), Positives = 57/83 (68%)
Frame = +3
Query: 3 RGLRQGAPLIPYLFMLCMETLSLSIHRSVEEKQWKPINIGRQGPGVSHLFFADDLLLFGK 182
RGLRQG PL PYLF L ME L+ I V + WKP++I R G G+SHLFFADDL+LFG+
Sbjct: 635 RGLRQGDPLAPYLFNLVMERLAHDIQTRVNARTWKPVHITRGGTGISHLFFADDLMLFGE 694
Query: 183 ASET*ARVIEEVLTSFCCEFGQK 251
ASE A+++ + L SF G K
Sbjct: 695 ASEHQAQIMFDCLDSFSNASGLK 717
>dbj|BAE79382.1| unnamed protein product [Ipomoea batatas]
Length = 1366
Score = 90.5 bits (223), Expect = 2e-16
Identities = 46/83 (55%), Positives = 57/83 (68%)
Frame = +3
Query: 3 RGLRQGAPLIPYLFMLCMETLSLSIHRSVEEKQWKPINIGRQGPGVSHLFFADDLLLFGK 182
RGLRQG PL PYLF L ME L+ I V + WKP++I R G G+SHLFFADDL+LFG+
Sbjct: 635 RGLRQGDPLAPYLFNLVMERLAHDIQTRVNARTWKPVHITRGGTGISHLFFADDLMLFGE 694
Query: 183 ASET*ARVIEEVLTSFCCEFGQK 251
ASE A+++ + L SF G K
Sbjct: 695 ASEHQAQIMFDCLDSFSNASGLK 717
>gb|EOY02808.1| Uncharacterized protein TCM_017202 [Theobroma cacao]
Length = 546
Score = 89.0 bits (219), Expect = 6e-16
Identities = 46/87 (52%), Positives = 61/87 (70%), Gaps = 2/87 (2%)
Frame = +3
Query: 3 RGLRQGAPLIPYLFMLCMETLSLSIHRSVEEKQWKPINIGRQGPGVSHLFFADDLLLFGK 182
RG+RQG PL PYLF+LC+E L+ I +VE + WKPI +G+ GP ++HLFFADDL+L +
Sbjct: 119 RGVRQG-PLAPYLFVLCIERLAHGIKHAVEHEMWKPIRLGKHGPPLTHLFFADDLILLAE 177
Query: 183 ASET*ARVIEEVLTSF--CCEFGQKGS 257
ASE+ VI+ VL F C Q+GS
Sbjct: 178 ASESQIEVIKGVLEDFYACSGGKQEGS 204
>gb|EOY02376.1| LINE-type retrotransposon LIb DNA, Insertion at the S11 site-like
protein [Theobroma cacao]
Length = 620
Score = 89.0 bits (219), Expect = 6e-16
Identities = 40/77 (51%), Positives = 57/77 (74%)
Frame = +3
Query: 3 RGLRQGAPLIPYLFMLCMETLSLSIHRSVEEKQWKPINIGRQGPGVSHLFFADDLLLFGK 182
RG+R G PL PYLF+LC+E L+ I ++VE++ WKPI +G+ GP +++LFF DDL+L +
Sbjct: 208 RGVRLGDPLAPYLFVLCIEKLAHGIKQAVEQEMWKPIRLGKHGPPLTYLFFMDDLILLAE 267
Query: 183 ASET*ARVIEEVLTSFC 233
ASE+ VI+ VL FC
Sbjct: 268 ASESQMEVIKGVLEDFC 284
>gb|AAC63844.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1231
Score = 89.0 bits (219), Expect = 6e-16
Identities = 46/86 (53%), Positives = 57/86 (66%)
Frame = +3
Query: 3 RGLRQGAPLIPYLFMLCMETLSLSIHRSVEEKQWKPINIGRQGPGVSHLFFADDLLLFGK 182
RGLRQG PL PYLF+LC+E L I SV +++WKPI + G +SH+ FADDL+LF +
Sbjct: 494 RGLRQGDPLSPYLFVLCLERLCHLIEASVGKREWKPIAVSCGGSKLSHVCFADDLILFAE 553
Query: 183 ASET*ARVIEEVLTSFCCEFGQKGSL 260
AS R+I VL FC GQK SL
Sbjct: 554 ASVAQIRIIRRVLERFCEASGQKVSL 579
>ref|XP_006490008.1| PREDICTED: uncharacterized protein LOC102624085 [Citrus sinensis]
Length = 1635
Score = 88.6 bits (218), Expect = 8e-16
Identities = 41/83 (49%), Positives = 55/83 (66%)
Frame = +3
Query: 3 RGLRQGAPLIPYLFMLCMETLSLSIHRSVEEKQWKPINIGRQGPGVSHLFFADDLLLFGK 182
RG+RQG PL PY+F+LC+E LS I RS+++ WKPI + R G +SHLFFADDLL +
Sbjct: 1127 RGVRQGDPLSPYIFVLCIERLSHGISRSIQQGHWKPIRLARMGTPLSHLFFADDLLFLSE 1186
Query: 183 ASET*ARVIEEVLTSFCCEFGQK 251
AS A +I +++ F G K
Sbjct: 1187 ASSQQAIIINKIIDEFSASSGAK 1209
>gb|EOY11683.1| Uncharacterized protein TCM_026784 [Theobroma cacao]
Length = 702
Score = 87.0 bits (214), Expect = 2e-15
Identities = 41/83 (49%), Positives = 56/83 (67%)
Frame = +3
Query: 3 RGLRQGAPLIPYLFMLCMETLSLSIHRSVEEKQWKPINIGRQGPGVSHLFFADDLLLFGK 182
RG+RQG P PYLF+LC+E LS +I+ ++E+ WKPI +GR P +SH FF DDL+L+ +
Sbjct: 399 RGVRQGDPHSPYLFVLCIERLSHAINIAMEQGLWKPIKLGRHCPPISHFFFVDDLILYAE 458
Query: 183 ASET*ARVIEEVLTSFCCEFGQK 251
AS +I VL FC G+K
Sbjct: 459 ASVDQMEIINGVLGDFCACLGEK 481
>gb|ABO80459.1| RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease H
[Medicago truncatula]
Length = 869
Score = 87.0 bits (214), Expect = 2e-15
Identities = 42/85 (49%), Positives = 58/85 (68%)
Frame = +3
Query: 6 GLRQGAPLIPYLFMLCMETLSLSIHRSVEEKQWKPINIGRQGPGVSHLFFADDLLLFGKA 185
GLRQG PL PYLF++CME LSL+I+++V E +W+PI + P +SHL FADD+LLF KA
Sbjct: 194 GLRQGDPLSPYLFIICMEKLSLAINKAVHEGEWEPIRMSASSPPLSHLLFADDVLLFTKA 253
Query: 186 SET*ARVIEEVLTSFCCEFGQKGSL 260
+ R I+++ F G K +L
Sbjct: 254 KNSQLRFIKDLFDRFSKALGLKINL 278
>emb|CCA66009.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
Length = 1378
Score = 83.2 bits (204), Expect = 3e-14
Identities = 41/83 (49%), Positives = 54/83 (65%)
Frame = +3
Query: 3 RGLRQGAPLIPYLFMLCMETLSLSIHRSVEEKQWKPINIGRQGPGVSHLFFADDLLLFGK 182
RGLRQG PL PYL+++CME L+ I + V WKP+ R GP +S+L FADDL+LF +
Sbjct: 637 RGLRQGDPLSPYLYVICMERLAHLIDQEVTNGNWKPVKASRNGPPISNLAFADDLILFSE 696
Query: 183 ASET*ARVIEEVLTSFCCEFGQK 251
AS A+V++ L FC G K
Sbjct: 697 ASVEQAQVMKWCLDRFCEASGSK 719
>gb|ABD28627.2| RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease H
[Medicago truncatula]
Length = 1296
Score = 80.9 bits (198), Expect = 2e-13
Identities = 41/82 (50%), Positives = 53/82 (64%)
Frame = +3
Query: 6 GLRQGAPLIPYLFMLCMETLSLSIHRSVEEKQWKPINIGRQGPGVSHLFFADDLLLFGKA 185
GLRQG PL PYLF+LCME LS++I +V + W+PI+I GP +SHL FADD+LLF KA
Sbjct: 634 GLRQGDPLSPYLFILCMEKLSVAIQDAVLQGSWEPIHIINDGPQISHLLFADDVLLFTKA 693
Query: 186 SET*ARVIEEVLTSFCCEFGQK 251
+ + I + F G K
Sbjct: 694 KSSQLQFITNLFDRFSRASGLK 715
>emb|CCA65997.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
Length = 1363
Score = 80.1 bits (196), Expect = 3e-13
Identities = 40/76 (52%), Positives = 51/76 (67%)
Frame = +3
Query: 3 RGLRQGAPLIPYLFMLCMETLSLSIHRSVEEKQWKPINIGRQGPGVSHLFFADDLLLFGK 182
RG+RQG PL PY+F+LCME LS+ I + + WKPI I GVSH+F+ADD+ LFG+
Sbjct: 635 RGIRQGDPLSPYIFVLCMERLSMLISDRIRDGSWKPIKIS-SDLGVSHIFYADDVFLFGQ 693
Query: 183 ASET*ARVIEEVLTSF 230
AS VI+ VL F
Sbjct: 694 ASVRNGGVIQNVLEEF 709