BLASTX nr result
ID: Catharanthus22_contig00044718
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Catharanthus22_contig00044718
(272 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|EOY28870.1| Transcription activators,DNA binding,RNA polymera... 58 1e-06
gb|EOY28869.1| Transcription activators,DNA binding,RNA polymera... 58 1e-06
ref|XP_006467340.1| PREDICTED: transcription initiation factor I... 58 1e-06
ref|XP_006449854.1| hypothetical protein CICLE_v10014841mg [Citr... 58 1e-06
gb|EPS63331.1| hypothetical protein M569_11453, partial [Genlise... 58 1e-06
ref|XP_002262798.2| PREDICTED: transcription initiation factor I... 58 1e-06
emb|CBI33123.3| unnamed protein product [Vitis vinifera] 58 1e-06
emb|CAN65486.1| hypothetical protein VITISV_003680 [Vitis vinifera] 58 1e-06
ref|XP_006449856.1| hypothetical protein CICLE_v10014841mg [Citr... 57 3e-06
ref|XP_006352367.1| PREDICTED: transcription initiation factor I... 57 3e-06
ref|XP_006352364.1| PREDICTED: transcription initiation factor I... 57 3e-06
ref|XP_006396740.1| hypothetical protein EUTSA_v10028564mg [Eutr... 57 3e-06
gb|EOY28871.1| Transcription activators,DNA binding,RNA polymera... 57 3e-06
ref|XP_006290188.1| hypothetical protein CARUB_v10003868mg, part... 57 3e-06
ref|XP_004250258.1| PREDICTED: transcription initiation factor I... 57 3e-06
ref|NP_001154225.2| transcription initiation factor IIF subunit ... 57 3e-06
ref|NP_192998.3| transcription initiation factor IIF subunit alp... 57 3e-06
ref|XP_002872663.1| mutant TFIIF-alpha [Arabidopsis lyrata subsp... 57 3e-06
gb|AAR28013.1| mutant TFIIF-alpha [Arabidopsis thaliana] 57 3e-06
sp|Q9SU25.1|T2FA_ARATH RecName: Full=Transcription initiation fa... 57 3e-06
>gb|EOY28870.1| Transcription activators,DNA binding,RNA polymerase II
transcription factors,catalytics,transcription
initiation factors isoform 2 [Theobroma cacao]
Length = 473
Score = 58.2 bits (139), Expect = 1e-06
Identities = 37/89 (41%), Positives = 51/89 (57%), Gaps = 5/89 (5%)
Frame = -1
Query: 254 GMQGGNLYDQCREYVLRMLPFCMPHLYAWAILVMHIIFARSS-----LISSMIYIFVQFN 90
G+QG L D RE + P+ + A H+ ++S+ ++ ++ +
Sbjct: 23 GLQGRQLTDPLREKY-KNKPWMLEDETGQAQYQGHLEGSQSATYYLLMMQGKEFVAIPAG 81
Query: 89 FRYNFNKVAQYKQLTLEEAEEKMKNRRRT 3
YNFNKVAQYKQLTLEEAEEKMKNRR+T
Sbjct: 82 SWYNFNKVAQYKQLTLEEAEEKMKNRRKT 110
>gb|EOY28869.1| Transcription activators,DNA binding,RNA polymerase II
transcription factors,catalytics,transcription
initiation factors isoform 1 [Theobroma cacao]
Length = 549
Score = 58.2 bits (139), Expect = 1e-06
Identities = 37/89 (41%), Positives = 51/89 (57%), Gaps = 5/89 (5%)
Frame = -1
Query: 254 GMQGGNLYDQCREYVLRMLPFCMPHLYAWAILVMHIIFARSS-----LISSMIYIFVQFN 90
G+QG L D RE + P+ + A H+ ++S+ ++ ++ +
Sbjct: 99 GLQGRQLTDPLREKY-KNKPWMLEDETGQAQYQGHLEGSQSATYYLLMMQGKEFVAIPAG 157
Query: 89 FRYNFNKVAQYKQLTLEEAEEKMKNRRRT 3
YNFNKVAQYKQLTLEEAEEKMKNRR+T
Sbjct: 158 SWYNFNKVAQYKQLTLEEAEEKMKNRRKT 186
>ref|XP_006467340.1| PREDICTED: transcription initiation factor IIF subunit alpha-like
isoform X1 [Citrus sinensis]
gi|568825955|ref|XP_006467341.1| PREDICTED:
transcription initiation factor IIF subunit alpha-like
isoform X2 [Citrus sinensis]
Length = 538
Score = 57.8 bits (138), Expect = 1e-06
Identities = 37/89 (41%), Positives = 52/89 (58%), Gaps = 5/89 (5%)
Frame = -1
Query: 254 GMQGGNLYDQCREYVLRMLPFCMPHLYAWAILVMHIIFARSS-----LISSMIYIFVQFN 90
G+QG + D RE + P+ + A H+ ++S+ ++ S ++ +
Sbjct: 99 GLQGRQVTDTLREKY-KNKPWMLEDETGQAQYQGHLEGSQSATYYLLVMHSKEFVAIPAG 157
Query: 89 FRYNFNKVAQYKQLTLEEAEEKMKNRRRT 3
YNFNKVAQYKQLTLEEAEEKMKNRR+T
Sbjct: 158 SWYNFNKVAQYKQLTLEEAEEKMKNRRKT 186
>ref|XP_006449854.1| hypothetical protein CICLE_v10014841mg [Citrus clementina]
gi|567915083|ref|XP_006449855.1| hypothetical protein
CICLE_v10014841mg [Citrus clementina]
gi|557552465|gb|ESR63094.1| hypothetical protein
CICLE_v10014841mg [Citrus clementina]
gi|557552466|gb|ESR63095.1| hypothetical protein
CICLE_v10014841mg [Citrus clementina]
Length = 538
Score = 57.8 bits (138), Expect = 1e-06
Identities = 37/89 (41%), Positives = 52/89 (58%), Gaps = 5/89 (5%)
Frame = -1
Query: 254 GMQGGNLYDQCREYVLRMLPFCMPHLYAWAILVMHIIFARSS-----LISSMIYIFVQFN 90
G+QG + D RE + P+ + A H+ ++S+ ++ S ++ +
Sbjct: 99 GLQGRQVTDTLREKY-KNKPWMLEDETGQAQYQGHLEGSQSATYYLLVMHSKEFVAIPAG 157
Query: 89 FRYNFNKVAQYKQLTLEEAEEKMKNRRRT 3
YNFNKVAQYKQLTLEEAEEKMKNRR+T
Sbjct: 158 SWYNFNKVAQYKQLTLEEAEEKMKNRRKT 186
>gb|EPS63331.1| hypothetical protein M569_11453, partial [Genlisea aurea]
Length = 371
Score = 57.8 bits (138), Expect = 1e-06
Identities = 27/27 (100%), Positives = 27/27 (100%)
Frame = -1
Query: 83 YNFNKVAQYKQLTLEEAEEKMKNRRRT 3
YNFNKVAQYKQLTLEEAEEKMKNRRRT
Sbjct: 163 YNFNKVAQYKQLTLEEAEEKMKNRRRT 189
>ref|XP_002262798.2| PREDICTED: transcription initiation factor IIF subunit alpha-like
[Vitis vinifera]
Length = 534
Score = 57.8 bits (138), Expect = 1e-06
Identities = 27/27 (100%), Positives = 27/27 (100%)
Frame = -1
Query: 83 YNFNKVAQYKQLTLEEAEEKMKNRRRT 3
YNFNKVAQYKQLTLEEAEEKMKNRRRT
Sbjct: 155 YNFNKVAQYKQLTLEEAEEKMKNRRRT 181
>emb|CBI33123.3| unnamed protein product [Vitis vinifera]
Length = 539
Score = 57.8 bits (138), Expect = 1e-06
Identities = 27/27 (100%), Positives = 27/27 (100%)
Frame = -1
Query: 83 YNFNKVAQYKQLTLEEAEEKMKNRRRT 3
YNFNKVAQYKQLTLEEAEEKMKNRRRT
Sbjct: 160 YNFNKVAQYKQLTLEEAEEKMKNRRRT 186
>emb|CAN65486.1| hypothetical protein VITISV_003680 [Vitis vinifera]
Length = 435
Score = 57.8 bits (138), Expect = 1e-06
Identities = 27/27 (100%), Positives = 27/27 (100%)
Frame = -1
Query: 83 YNFNKVAQYKQLTLEEAEEKMKNRRRT 3
YNFNKVAQYKQLTLEEAEEKMKNRRRT
Sbjct: 56 YNFNKVAQYKQLTLEEAEEKMKNRRRT 82
>ref|XP_006449856.1| hypothetical protein CICLE_v10014841mg [Citrus clementina]
gi|557552467|gb|ESR63096.1| hypothetical protein
CICLE_v10014841mg [Citrus clementina]
Length = 420
Score = 57.0 bits (136), Expect = 3e-06
Identities = 31/54 (57%), Positives = 36/54 (66%)
Frame = -1
Query: 164 ILVMHIIFARSSLISSMIYIFVQFNFRYNFNKVAQYKQLTLEEAEEKMKNRRRT 3
+LVMH S ++ + YNFNKVAQYKQLTLEEAEEKMKNRR+T
Sbjct: 25 LLVMH----------SKEFVAIPAGSWYNFNKVAQYKQLTLEEAEEKMKNRRKT 68
>ref|XP_006352367.1| PREDICTED: transcription initiation factor IIF subunit alpha-like
isoform X4 [Solanum tuberosum]
Length = 535
Score = 56.6 bits (135), Expect = 3e-06
Identities = 26/27 (96%), Positives = 27/27 (100%)
Frame = -1
Query: 83 YNFNKVAQYKQLTLEEAEEKMKNRRRT 3
YNFNKVAQYKQLTLEEAEEKMKNRR+T
Sbjct: 159 YNFNKVAQYKQLTLEEAEEKMKNRRKT 185
>ref|XP_006352364.1| PREDICTED: transcription initiation factor IIF subunit alpha-like
isoform X1 [Solanum tuberosum]
gi|565371548|ref|XP_006352365.1| PREDICTED:
transcription initiation factor IIF subunit alpha-like
isoform X2 [Solanum tuberosum]
gi|565371550|ref|XP_006352366.1| PREDICTED:
transcription initiation factor IIF subunit alpha-like
isoform X3 [Solanum tuberosum]
Length = 538
Score = 56.6 bits (135), Expect = 3e-06
Identities = 26/27 (96%), Positives = 27/27 (100%)
Frame = -1
Query: 83 YNFNKVAQYKQLTLEEAEEKMKNRRRT 3
YNFNKVAQYKQLTLEEAEEKMKNRR+T
Sbjct: 159 YNFNKVAQYKQLTLEEAEEKMKNRRKT 185
>ref|XP_006396740.1| hypothetical protein EUTSA_v10028564mg [Eutrema salsugineum]
gi|557097757|gb|ESQ38193.1| hypothetical protein
EUTSA_v10028564mg [Eutrema salsugineum]
Length = 542
Score = 56.6 bits (135), Expect = 3e-06
Identities = 26/27 (96%), Positives = 27/27 (100%)
Frame = -1
Query: 83 YNFNKVAQYKQLTLEEAEEKMKNRRRT 3
YNFNKVAQYKQLTLEEAEEKMKNRR+T
Sbjct: 159 YNFNKVAQYKQLTLEEAEEKMKNRRKT 185
>gb|EOY28871.1| Transcription activators,DNA binding,RNA polymerase II
transcription factors,catalytics,transcription
initiation factors isoform 3 [Theobroma cacao]
Length = 496
Score = 56.6 bits (135), Expect = 3e-06
Identities = 26/27 (96%), Positives = 27/27 (100%)
Frame = -1
Query: 83 YNFNKVAQYKQLTLEEAEEKMKNRRRT 3
YNFNKVAQYKQLTLEEAEEKMKNRR+T
Sbjct: 107 YNFNKVAQYKQLTLEEAEEKMKNRRKT 133
>ref|XP_006290188.1| hypothetical protein CARUB_v10003868mg, partial [Capsella
rubella] gi|482558894|gb|EOA23086.1| hypothetical
protein CARUB_v10003868mg, partial [Capsella rubella]
Length = 394
Score = 56.6 bits (135), Expect = 3e-06
Identities = 26/27 (96%), Positives = 27/27 (100%)
Frame = -1
Query: 83 YNFNKVAQYKQLTLEEAEEKMKNRRRT 3
YNFNKVAQYKQLTLEEAEEKMKNRR+T
Sbjct: 15 YNFNKVAQYKQLTLEEAEEKMKNRRKT 41
>ref|XP_004250258.1| PREDICTED: transcription initiation factor IIF subunit alpha-like
[Solanum lycopersicum]
Length = 534
Score = 56.6 bits (135), Expect = 3e-06
Identities = 26/27 (96%), Positives = 27/27 (100%)
Frame = -1
Query: 83 YNFNKVAQYKQLTLEEAEEKMKNRRRT 3
YNFNKVAQYKQLTLEEAEEKMKNRR+T
Sbjct: 159 YNFNKVAQYKQLTLEEAEEKMKNRRKT 185
>ref|NP_001154225.2| transcription initiation factor IIF subunit alpha [Arabidopsis
thaliana] gi|332657756|gb|AEE83156.1| transcription
initiation factor IIF subunit alpha [Arabidopsis
thaliana]
Length = 506
Score = 56.6 bits (135), Expect = 3e-06
Identities = 26/27 (96%), Positives = 27/27 (100%)
Frame = -1
Query: 83 YNFNKVAQYKQLTLEEAEEKMKNRRRT 3
YNFNKVAQYKQLTLEEAEEKMKNRR+T
Sbjct: 15 YNFNKVAQYKQLTLEEAEEKMKNRRKT 41
>ref|NP_192998.3| transcription initiation factor IIF subunit alpha [Arabidopsis
thaliana] gi|332657755|gb|AEE83155.1| transcription
initiation factor IIF subunit alpha [Arabidopsis
thaliana]
Length = 400
Score = 56.6 bits (135), Expect = 3e-06
Identities = 26/27 (96%), Positives = 27/27 (100%)
Frame = -1
Query: 83 YNFNKVAQYKQLTLEEAEEKMKNRRRT 3
YNFNKVAQYKQLTLEEAEEKMKNRR+T
Sbjct: 15 YNFNKVAQYKQLTLEEAEEKMKNRRKT 41
>ref|XP_002872663.1| mutant TFIIF-alpha [Arabidopsis lyrata subsp. lyrata]
gi|297318500|gb|EFH48922.1| mutant TFIIF-alpha
[Arabidopsis lyrata subsp. lyrata]
Length = 619
Score = 56.6 bits (135), Expect = 3e-06
Identities = 26/27 (96%), Positives = 27/27 (100%)
Frame = -1
Query: 83 YNFNKVAQYKQLTLEEAEEKMKNRRRT 3
YNFNKVAQYKQLTLEEAEEKMKNRR+T
Sbjct: 158 YNFNKVAQYKQLTLEEAEEKMKNRRKT 184
>gb|AAR28013.1| mutant TFIIF-alpha [Arabidopsis thaliana]
Length = 640
Score = 56.6 bits (135), Expect = 3e-06
Identities = 26/27 (96%), Positives = 27/27 (100%)
Frame = -1
Query: 83 YNFNKVAQYKQLTLEEAEEKMKNRRRT 3
YNFNKVAQYKQLTLEEAEEKMKNRR+T
Sbjct: 158 YNFNKVAQYKQLTLEEAEEKMKNRRKT 184
>sp|Q9SU25.1|T2FA_ARATH RecName: Full=Transcription initiation factor IIF subunit alpha;
Short=TFIIF-alpha; AltName: Full=General transcription
factor IIF subunit 1; AltName: Full=Transcription
initiation factor RAP74 homolog; Short=AtRAP74
gi|5823572|emb|CAB53754.1| putative protein [Arabidopsis
thaliana] gi|7267963|emb|CAB78304.1| putative protein
[Arabidopsis thaliana]
Length = 649
Score = 56.6 bits (135), Expect = 3e-06
Identities = 26/27 (96%), Positives = 27/27 (100%)
Frame = -1
Query: 83 YNFNKVAQYKQLTLEEAEEKMKNRRRT 3
YNFNKVAQYKQLTLEEAEEKMKNRR+T
Sbjct: 158 YNFNKVAQYKQLTLEEAEEKMKNRRKT 184