BLASTX nr result
ID: Catharanthus22_contig00043783
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Catharanthus22_contig00043783
(376 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CCA65997.1| hypothetical protein [Beta vulgaris subsp. vulga... 57 4e-10
gb|AAF23831.1|AC007234_3 F1E22.12 [Arabidopsis thaliana] 62 1e-07
ref|XP_004289445.1| PREDICTED: putative ribonuclease H protein A... 60 3e-07
gb|ABW81175.1| non-LTR retrotransposon transposase [Arabidopsis ... 59 7e-07
gb|EOY32757.1| Uncharacterized protein TCM_040787 [Theobroma cacao] 58 1e-06
gb|ABO80459.1| RNA-directed DNA polymerase (Reverse transcriptas... 55 2e-06
gb|AAC63844.1| putative non-LTR retroelement reverse transcripta... 57 2e-06
ref|XP_004305437.1| PREDICTED: uncharacterized protein LOC101296... 56 4e-06
gb|EOX92867.1| LINE-type retrotransposon LIb DNA, Insertion at t... 55 7e-06
gb|EOY21798.1| Uncharacterized protein TCM_013937 [Theobroma cacao] 55 9e-06
gb|ABD28627.2| RNA-directed DNA polymerase (Reverse transcriptas... 55 9e-06
emb|CCA66009.1| hypothetical protein [Beta vulgaris subsp. vulga... 46 1e-05
>emb|CCA65997.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
Length = 1363
Score = 57.4 bits (137), Expect(2) = 4e-10
Identities = 26/69 (37%), Positives = 43/69 (62%)
Frame = -1
Query: 370 HLFILCLEYLSLQIENAVQIKKWNPFALNKSKLKISHCFFADDLVLFAKTDVKNASSIVS 191
++F+LC+E LS+ I + ++ W P ++ S L +SH F+ADD+ LF + V+N I +
Sbjct: 646 YIFVLCMERLSMLISDRIRDGSWKPIKIS-SDLGVSHIFYADDVFLFGQASVRNGGVIQN 704
Query: 190 ILNGFSKIS 164
+L F IS
Sbjct: 705 VLEEFGNIS 713
Score = 32.3 bits (72), Expect(2) = 4e-10
Identities = 17/45 (37%), Positives = 22/45 (48%)
Frame = -3
Query: 170 NISGLTVSYQKSKVLFXXXXXXXXXXXXXXILNVEASNNFGKYLG 36
NISGL V+ KS +F L ++ S +FGKYLG
Sbjct: 711 NISGLRVNMSKSLAIFPPKMNPQRRRMLADFLTMKGSTSFGKYLG 755
>gb|AAF23831.1|AC007234_3 F1E22.12 [Arabidopsis thaliana]
Length = 1055
Score = 61.6 bits (148), Expect = 1e-07
Identities = 31/90 (34%), Positives = 49/90 (54%)
Frame = -1
Query: 370 HLFILCLEYLSLQIENAVQIKKWNPFALNKSKLKISHCFFADDLVLFAKTDVKNASSIVS 191
+LF+LC+E L IE ++ K+W P L++ K+SH FADDL+LFA+ V+ +
Sbjct: 82 YLFVLCMERLCHLIERSINAKQWKPINLSRGGPKLSHICFADDLILFAEASVEQVQIVRR 141
Query: 190 ILNGFSKISQD*LLVTKNPKFSSLKILTSL 101
+L F S + + K+ F S + L
Sbjct: 142 VLEAFCTASGQKVSLEKSKIFFSKNVSREL 171
>ref|XP_004289445.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Fragaria
vesca subsp. vesca]
Length = 719
Score = 60.1 bits (144), Expect = 3e-07
Identities = 29/69 (42%), Positives = 43/69 (62%)
Frame = -1
Query: 370 HLFILCLEYLSLQIENAVQIKKWNPFALNKSKLKISHCFFADDLVLFAKTDVKNASSIVS 191
++F+LC+E LS I + V + W P ++S K+SH FFADDL+LFA+ + AS I
Sbjct: 257 YIFVLCMEKLSHLINSVVDMGYWKPVRASQSGPKVSHLFFADDLMLFAEASPQQASIIKD 316
Query: 190 ILNGFSKIS 164
L+ F +S
Sbjct: 317 CLDSFCDLS 325
>gb|ABW81175.1| non-LTR retrotransposon transposase [Arabidopsis cebennensis]
Length = 799
Score = 58.9 bits (141), Expect = 7e-07
Identities = 32/91 (35%), Positives = 50/91 (54%)
Frame = -1
Query: 370 HLFILCLEYLSLQIENAVQIKKWNPFALNKSKLKISHCFFADDLVLFAKTDVKNASSIVS 191
+LF+LCLE L QI+ AV K+W P ++++ +SH FADDL+LFA+ V +
Sbjct: 97 YLFVLCLERLCHQIDLAVGTKEWKPISMSRGGPLLSHICFADDLILFAEASVAQIRVVRK 156
Query: 190 ILNGFSKISQD*LLVTKNPKFSSLKILTSLQ 98
+L F S + + K+ F S + L+
Sbjct: 157 VLEKFCIASGQKVSLEKSKIFFSQNVHRDLE 187
>gb|EOY32757.1| Uncharacterized protein TCM_040787 [Theobroma cacao]
Length = 178
Score = 57.8 bits (138), Expect = 1e-06
Identities = 30/96 (31%), Positives = 50/96 (52%), Gaps = 7/96 (7%)
Frame = -1
Query: 370 HLFILCLEYLSLQIENAVQIKKWNPFALNKSKLKISHCFFADDLVLFAKTDVKNASSIVS 191
+LF+LCLE LS + V + W P + ++H FADDL+LF + VK +I+
Sbjct: 42 YLFVLCLETLSQLVNEEVSLGNWKPLVVTTRGPYLTHVCFADDLMLFGEASVKQVQTIMR 101
Query: 190 ILNGFS-------KISQD*LLVTKNPKFSSLKILTS 104
+L+ F + + +LV+ N S ++L+S
Sbjct: 102 VLDKFCLASGQKVSLEKSRMLVSSNVPLSKARVLSS 137
>gb|ABO80459.1| RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease H
[Medicago truncatula]
Length = 869
Score = 55.5 bits (132), Expect(2) = 2e-06
Identities = 27/67 (40%), Positives = 38/67 (56%)
Frame = -1
Query: 370 HLFILCLEYLSLQIENAVQIKKWNPFALNKSKLKISHCFFADDLVLFAKTDVKNASSIVS 191
+LFI+C+E LSL I AV +W P ++ S +SH FADD++LF K I
Sbjct: 204 YLFIICMEKLSLAINKAVHEGEWEPIRMSASSPPLSHLLFADDVLLFTKAKNSQLRFIKD 263
Query: 190 ILNGFSK 170
+ + FSK
Sbjct: 264 LFDRFSK 270
Score = 21.9 bits (45), Expect(2) = 2e-06
Identities = 8/23 (34%), Positives = 15/23 (65%)
Frame = -3
Query: 71 VEASNNFGKYLGFYFLRIQSRES 3
+ ++ + GKYLGF L+ + + S
Sbjct: 302 IRSTTSLGKYLGFPILKGRPKRS 324
>gb|AAC63844.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1231
Score = 57.4 bits (137), Expect = 2e-06
Identities = 32/91 (35%), Positives = 50/91 (54%)
Frame = -1
Query: 370 HLFILCLEYLSLQIENAVQIKKWNPFALNKSKLKISHCFFADDLVLFAKTDVKNASSIVS 191
+LF+LCLE L IE +V ++W P A++ K+SH FADDL+LFA+ V I
Sbjct: 505 YLFVLCLERLCHLIEASVGKREWKPIAVSCGGSKLSHVCFADDLILFAEASVAQIRIIRR 564
Query: 190 ILNGFSKISQD*LLVTKNPKFSSLKILTSLQ 98
+L F + S + + K+ F S + ++
Sbjct: 565 VLERFCEASGQKVSLEKSKIFFSHNVSREME 595
>ref|XP_004305437.1| PREDICTED: uncharacterized protein LOC101296313 [Fragaria vesca
subsp. vesca]
Length = 449
Score = 56.2 bits (134), Expect = 4e-06
Identities = 29/84 (34%), Positives = 48/84 (57%)
Frame = -1
Query: 373 SHLFILCLEYLSLQIENAVQIKKWNPFALNKSKLKISHCFFADDLVLFAKTDVKNASSIV 194
S++F+LC+E LS I++A+ W ++S KI H FFADDL+LF + + S +
Sbjct: 210 SYIFVLCVEKLSHLIQSAIDYGYWKAVKASQSGPKILHLFFADDLILFVEASSQQTSLLK 269
Query: 193 SILNGFSKISQD*LLVTKNPKFSS 122
+ L+ F +S+ + K+ F S
Sbjct: 270 TCLDNFCALSRQTVSFEKSLVFCS 293
>gb|EOX92867.1| LINE-type retrotransposon LIb DNA, Insertion at the S11 site-like
protein [Theobroma cacao]
Length = 780
Score = 55.5 bits (132), Expect = 7e-06
Identities = 32/86 (37%), Positives = 44/86 (51%)
Frame = -1
Query: 370 HLFILCLEYLSLQIENAVQIKKWNPFALNKSKLKISHCFFADDLVLFAKTDVKNASSIVS 191
+LF+LC+E LS I AV W P L + ISH FFADDL+LFA+ V I
Sbjct: 692 YLFVLCIERLSHAINIAVVQGLWKPIKLGRHYPLISHLFFADDLILFAEASVDQMEIING 751
Query: 190 ILNGFSKISQD*LLVTKNPKFSSLKI 113
+L F + + V K+ + S +
Sbjct: 752 VLGDFCACLGEKVNVQKSSFYCSANV 777
>gb|EOY21798.1| Uncharacterized protein TCM_013937 [Theobroma cacao]
Length = 309
Score = 55.1 bits (131), Expect = 9e-06
Identities = 27/69 (39%), Positives = 40/69 (57%)
Frame = -1
Query: 370 HLFILCLEYLSLQIENAVQIKKWNPFALNKSKLKISHCFFADDLVLFAKTDVKNASSIVS 191
+LF+LCLE LS I+N V + W P L ++ ++H +ADDLVLF T K ++
Sbjct: 131 YLFVLCLEKLSQLIDNKVWLGNWRPLLLTRNGPFLAHVCYADDLVLFRVTSTKQVQVMMK 190
Query: 190 ILNGFSKIS 164
L+ F +S
Sbjct: 191 TLDRFYLVS 199
>gb|ABD28627.2| RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease H
[Medicago truncatula]
Length = 1296
Score = 55.1 bits (131), Expect = 9e-06
Identities = 29/83 (34%), Positives = 47/83 (56%)
Frame = -1
Query: 370 HLFILCLEYLSLQIENAVQIKKWNPFALNKSKLKISHCFFADDLVLFAKTDVKNASSIVS 191
+LFILC+E LS+ I++AV W P + +ISH FADD++LF K I +
Sbjct: 644 YLFILCMEKLSVAIQDAVLQGSWEPIHIINDGPQISHLLFADDVLLFTKAKSSQLQFITN 703
Query: 190 ILNGFSKISQD*LLVTKNPKFSS 122
+ + FS+ S + ++K+ + S
Sbjct: 704 LFDRFSRASGLKINISKSRAYYS 726
>emb|CCA66009.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
Length = 1378
Score = 45.8 bits (107), Expect(2) = 1e-05
Identities = 24/76 (31%), Positives = 44/76 (57%), Gaps = 5/76 (6%)
Frame = -1
Query: 370 HLFILCLEYLSLQIENAVQIKKWNPFALNKSKLKISHCFFADDLVLFAKTDVKNASSIVS 191
+L+++C+E L+ I+ V W P +++ IS+ FADDL+LF++ V+ A +
Sbjct: 648 YLYVICMERLAHLIDQEVTNGNWKPVKASRNGPPISNLAFADDLILFSEASVEQAQVMKW 707
Query: 190 ILNGF-----SKISQD 158
L+ F SK+++D
Sbjct: 708 CLDRFCEASGSKVNED 723
Score = 28.9 bits (63), Expect(2) = 1e-05
Identities = 16/43 (37%), Positives = 21/43 (48%)
Frame = -3
Query: 164 SGLTVSYQKSKVLFXXXXXXXXXXXXXXILNVEASNNFGKYLG 36
SG V+ KSK+ F L +EA+ +FGKYLG
Sbjct: 716 SGSKVNEDKSKIYFSANTHLDIRDAVCNTLAMEATADFGKYLG 758