BLASTX nr result
ID: Catharanthus22_contig00043268
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Catharanthus22_contig00043268
(618 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_006492639.1| PREDICTED: putative ribonuclease H protein A... 69 1e-09
ref|XP_006469117.1| PREDICTED: putative ribonuclease H protein A... 69 1e-09
ref|XP_006469101.1| PREDICTED: putative ribonuclease H protein A... 67 3e-09
gb|EOY24339.1| RNA-directed DNA polymerase (Reverse transcriptas... 65 1e-08
emb|CAN61457.1| hypothetical protein VITISV_029796 [Vitis vinifera] 64 3e-08
gb|EOY02864.1| Ribonuclease H protein [Theobroma cacao] 64 4e-08
ref|XP_006584399.1| PREDICTED: putative ribonuclease H protein A... 62 1e-07
emb|CCA66009.1| hypothetical protein [Beta vulgaris subsp. vulga... 62 2e-07
gb|ABD28505.2| RNA-directed DNA polymerase (Reverse transcriptas... 60 5e-07
ref|XP_002533976.1| hypothetical protein RCOM_0370700 [Ricinus c... 59 8e-07
ref|XP_002312169.1| predicted protein [Populus trichocarpa] 59 1e-06
emb|CAN64312.1| hypothetical protein VITISV_027954 [Vitis vinifera] 59 1e-06
ref|XP_006490008.1| PREDICTED: uncharacterized protein LOC102624... 57 3e-06
ref|XP_006449044.1| hypothetical protein CICLE_v10014034mg [Citr... 56 7e-06
>ref|XP_006492639.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus
sinensis]
Length = 569
Score = 68.6 bits (166), Expect = 1e-09
Identities = 45/146 (30%), Positives = 65/146 (44%), Gaps = 6/146 (4%)
Frame = -3
Query: 460 WKKIMTIQRATSI-FFLWQV*WGRLKTKVFLASRGMSIDLCCLDSACFFESDIHALRDCS 284
W+ + + S+ FLWQV RLKTK LA R + + C E +H LRDC+
Sbjct: 173 WRMVWNWKGPQSVRIFLWQVFHDRLKTKAELARRHIPVSTSCDRCGAVNEDAMHVLRDCA 232
Query: 283 VTMAVWKLLVPFQHWRQFFTFGNTSTWLDWNLSQSYDSTIVG-----VTWPIVFRVTCY* 119
+ W L++P +QFF WL N+ IVG W I F + +
Sbjct: 233 LVKLFWLLILPANKRQQFFN-SRLQEWLRTNVG------IVGRLGSVSNWAIFFGIALWR 285
Query: 118 IWGWKNDRFFCLQKMGKLCLLVQSLS 41
+W W+N FF M +L+ L+
Sbjct: 286 LWFWRNQFFFNQASMDPNVVLMDVLT 311
>ref|XP_006469117.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus
sinensis]
Length = 491
Score = 68.6 bits (166), Expect = 1e-09
Identities = 38/110 (34%), Positives = 52/110 (47%)
Frame = -3
Query: 418 FLWQV*WGRLKTKVFLASRGMSIDLCCLDSACFFESDIHALRDCSVTMAVWKLLVPFQHW 239
F+W RLKTK + R + ID C E+ +H LRDC + +W L+P W
Sbjct: 291 FIWLALHDRLKTKAEIGRRHIHIDWTCDHCGVASETTLHVLRDCFMAKRLWNQLLP-SEW 349
Query: 238 RQFFTFGNTSTWLDWNLSQSYDSTIVGVTWPIVFRVTCY*IWGWKNDRFF 89
RQ F N WL NL +S G+ W +F V + +W W+N F
Sbjct: 350 RQVFFSSNLLDWLTLNL-RSNQCMENGLEWSCMFGVAIWRLWFWRNQYQF 398
>ref|XP_006469101.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus
sinensis]
Length = 684
Score = 67.4 bits (163), Expect = 3e-09
Identities = 41/122 (33%), Positives = 56/122 (45%), Gaps = 1/122 (0%)
Frame = -3
Query: 463 AWKKIMTIQRATSI-FFLWQV*WGRLKTKVFLASRGMSIDLCCLDSACFFESDIHALRDC 287
AWK T + ++ FLWQ +LKTK L+ R + I + C E IH LRDC
Sbjct: 380 AWKLAWTWKGPQAVRIFLWQALHAKLKTKEELSRRHIPISIGCERCGAPIEDVIHVLRDC 439
Query: 286 SVTMAVWKLLVPFQHWRQFFTFGNTSTWLDWNLSQSYDSTIVGVTWPIVFRVTCY*IWGW 107
M VW LVP ++ FF W+ NL + TW +F V + +W W
Sbjct: 440 QCIMRVWLRLVPARNHLSFFQ-STLRDWITANLQNKWKIASPS-TWECIFGVAIWRLWFW 497
Query: 106 KN 101
+N
Sbjct: 498 RN 499
>gb|EOY24339.1| RNA-directed DNA polymerase (Reverse transcriptase),
Polynucleotidyl transferase, Ribonuclease H fold-like
protein [Theobroma cacao]
Length = 616
Score = 65.5 bits (158), Expect = 1e-08
Identities = 45/131 (34%), Positives = 64/131 (48%)
Frame = -3
Query: 418 FLWQV*WGRLKTKVFLASRGMSIDLCCLDSACFFESDIHALRDCSVTMAVWKLLVPFQHW 239
FL Q G+L T + R MS C + ES +H LRDC + VW L +
Sbjct: 355 FLMQCLHGKLLTNLECRRRNMSSSATCALCSVSDESVLHLLRDCPHSKEVWLKLGSRMGY 414
Query: 238 RQFFTFGNTSTWLDWNLSQSYDSTIVGVTWPIVFRVTCY*IWGWKNDRFFCLQKMGKLCL 59
FF S WL NL ++Y+ + G+ W I+F TC+ IW W+N + F GKL
Sbjct: 415 GNFFDL-LLSDWLLTNL-KNYNVCVDGIPWVILFGFTCWYIWKWRNVKVF----EGKLIP 468
Query: 58 LVQSLSSLENL 26
+ + LS ++ L
Sbjct: 469 MDRKLSMIKGL 479
>emb|CAN61457.1| hypothetical protein VITISV_029796 [Vitis vinifera]
Length = 358
Score = 63.9 bits (154), Expect = 3e-08
Identities = 30/92 (32%), Positives = 49/92 (53%)
Frame = -3
Query: 364 RGMSIDLCCLDSACFFESDIHALRDCSVTMAVWKLLVPFQHWRQFFTFGNTSTWLDWNLS 185
RG++ D C E +H LRDC MA W++L+P W +FF+ G WL N+
Sbjct: 9 RGLASDSRCGGCNGSLEDAVHVLRDCPHAMAFWQVLLPGNKWNEFFS-GECREWLTKNVM 67
Query: 184 QSYDSTIVGVTWPIVFRVTCY*IWGWKNDRFF 89
+ + + + W ++F + C+ +W W+N R F
Sbjct: 68 RR-EIEGIPLQWNVLFALGCWWLWRWRNQRVF 98
>gb|EOY02864.1| Ribonuclease H protein [Theobroma cacao]
Length = 660
Score = 63.5 bits (153), Expect = 4e-08
Identities = 37/110 (33%), Positives = 52/110 (47%)
Frame = -3
Query: 418 FLWQV*WGRLKTKVFLASRGMSIDLCCLDSACFFESDIHALRDCSVTMAVWKLLVPFQHW 239
FL+Q GRL T R ++ D C E+ H LRDC V ++W ++P
Sbjct: 340 FLFQCLHGRLLTNRERLHRQLTTDSLCPQCRMEDETVTHVLRDCMVATSLWVKIIPQHEQ 399
Query: 238 RQFFTFGNTSTWLDWNLSQSYDSTIVGVTWPIVFRVTCY*IWGWKNDRFF 89
FFTF WL NL + I+G W +VF + C+ +W W+N F
Sbjct: 400 NDFFTF-PLREWLVSNLQK--QQLILGNPWSVVFGLACWCLWKWRNGVVF 446
>ref|XP_006584399.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Glycine
max]
Length = 470
Score = 62.4 bits (150), Expect = 1e-07
Identities = 40/123 (32%), Positives = 58/123 (47%), Gaps = 1/123 (0%)
Frame = -3
Query: 460 WKKIMTIQRATSI-FFLWQV*WGRLKTKVFLASRGMSIDLCCLDSACFFESDIHALRDCS 284
W KI I+ I F+WQV RL T +A RG C E+ +H LRDC
Sbjct: 138 WNKIWKIKAPERIKVFIWQVTHERLLTNSCIAHRGNG-QASCHHCVILEENILHVLRDCP 196
Query: 283 VTMAVWKLLVPFQHWRQFFTFGNTSTWLDWNLSQSYDSTIVGVTWPIVFRVTCY*IWGWK 104
+ VW L+ + FF + + W+D NLS+ ++T W V+ CY +W W+
Sbjct: 197 LANLVWLHLLDQSNVANFF-YPDLMEWIDMNLSRDLNATSKD-DWQSVWAQGCYFLWYWR 254
Query: 103 NDR 95
N +
Sbjct: 255 NQQ 257
>emb|CCA66009.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
Length = 1378
Score = 61.6 bits (148), Expect = 2e-07
Identities = 46/127 (36%), Positives = 62/127 (48%), Gaps = 1/127 (0%)
Frame = -3
Query: 466 AAWKKIMTIQRATSIFFLWQV*WGRLKTKVFLASRGMSIDLCCLDSACFFESDIHALRDC 287
A WK I T QR FF+W RL T R ++ D CL E+ H LR C
Sbjct: 1046 AVWK-IPTPQRVR--FFIWLAIQDRLMTNSNRFLRRLTDDPRCLVCGEVEENTDHILRRC 1102
Query: 286 SVTMAVW-KLLVPFQHWRQFFTFGNTSTWLDWNLSQSYDSTIVGVTWPIVFRVTCY*IWG 110
V +W KL + +H R+ G+ W+ NLS T++G W VF V+C+ +W
Sbjct: 1103 PVARILWRKLGMLGEHNREEINLGS---WITKNLSAD---TMMGSEWLRVFAVSCWWLWR 1156
Query: 109 WKNDRFF 89
W+NDR F
Sbjct: 1157 WRNDRCF 1163
>gb|ABD28505.2| RNA-directed DNA polymerase (Reverse transcriptase);
Polynucleotidyl transferase, Ribonuclease H fold
[Medicago truncatula]
Length = 729
Score = 60.1 bits (144), Expect = 5e-07
Identities = 36/113 (31%), Positives = 53/113 (46%), Gaps = 3/113 (2%)
Frame = -3
Query: 418 FLWQV*WGRLKTKVFLASRGMSIDLCCLDSACFFESDIHALRDCSVTMAVWKLLVPFQHW 239
F+W GR+ T + G+ I C A E+ IH LRDC + VW L+P +
Sbjct: 479 FIWLAAHGRILTNYRRSKWGVGISPTCPCCAREDETVIHVLRDCVHSTQVWLRLIPHNYI 538
Query: 238 RQFFTFGNTSTWLDWNLSQSYDSTIVG---VTWPIVFRVTCY*IWGWKNDRFF 89
FF+F + W+ NL++ +G TW F TC+ +W W+N F
Sbjct: 539 TNFFSF-DCREWVFNNLNKKG----IGDNPATWQTTFMTTCWYLWNWRNKSIF 586
>ref|XP_002533976.1| hypothetical protein RCOM_0370700 [Ricinus communis]
gi|223526039|gb|EEF28407.1| hypothetical protein
RCOM_0370700 [Ricinus communis]
Length = 139
Score = 59.3 bits (142), Expect = 8e-07
Identities = 33/111 (29%), Positives = 49/111 (44%)
Frame = -3
Query: 421 FFLWQV*WGRLKTKVFLASRGMSIDLCCLDSACFFESDIHALRDCSVTMAVWKLLVPFQH 242
+FLW +L T MS C E+ H LRDC +MAVW ++P H
Sbjct: 31 YFLWLCFHDKLLTNHERVRWRMSDQSSCAQCTGDVEAIHHILRDCPSSMAVWLKILPMCH 90
Query: 241 WRQFFTFGNTSTWLDWNLSQSYDSTIVGVTWPIVFRVTCY*IWGWKNDRFF 89
W+ F + + WL +NL D + W +F C+ +W ++N F
Sbjct: 91 WQTFLSL-SVEQWLLYNLLNE-DGVATSIKWKTLFGTACWMLWKFRNATLF 139
>ref|XP_002312169.1| predicted protein [Populus trichocarpa]
Length = 152
Score = 58.9 bits (141), Expect = 1e-06
Identities = 34/104 (32%), Positives = 53/104 (50%)
Frame = -3
Query: 400 WGRLKTKVFLASRGMSIDLCCLDSACFFESDIHALRDCSVTMAVWKLLVPFQHWRQFFTF 221
+G+L T + +S++ C LD A E+ IH RDC +W+ LV W F+
Sbjct: 16 YGKLLTNGLRFHKRLSMNPCLLDCAQIKENMIHVFRDCWRARTIWERLVDQDKW-VGFSQ 74
Query: 220 GNTSTWLDWNLSQSYDSTIVGVTWPIVFRVTCY*IWGWKNDRFF 89
G++ W NL ++S V W ++F VT + + W+NDR F
Sbjct: 75 GSSENWFLRNLEADFNSQDV-TRWRLLFGVTVWQLLRWRNDRCF 117
>emb|CAN64312.1| hypothetical protein VITISV_027954 [Vitis vinifera]
Length = 655
Score = 58.5 bits (140), Expect = 1e-06
Identities = 28/91 (30%), Positives = 46/91 (50%)
Frame = -3
Query: 361 GMSIDLCCLDSACFFESDIHALRDCSVTMAVWKLLVPFQHWRQFFTFGNTSTWLDWNLSQ 182
G++ D C E H LRDC M W++L+P W +FF+ G WL N+ +
Sbjct: 10 GLASDSRCEGCNGSLEDAXHVLRDCPHVMTFWQVLLPGNKWNEFFS-GECREWLTKNVMR 68
Query: 181 SYDSTIVGVTWPIVFRVTCY*IWGWKNDRFF 89
+ + + W ++F + C+ +W W+N R F
Sbjct: 69 R-EIEGIPLZWNVLFTLGCWWLWCWQNQRVF 98
>ref|XP_006490008.1| PREDICTED: uncharacterized protein LOC102624085 [Citrus sinensis]
Length = 1635
Score = 57.4 bits (137), Expect = 3e-06
Identities = 37/110 (33%), Positives = 50/110 (45%)
Frame = -3
Query: 418 FLWQV*WGRLKTKVFLASRGMSIDLCCLDSACFFESDIHALRDCSVTMAVWKLLVPFQHW 239
FLW + GRLKTK L R + C E +H LRDC VW L+P +
Sbjct: 1502 FLWLLLHGRLKTKKELNRRHLIDSTQCDRCGGPVEDILHTLRDCVTARRVWSHLLPNNYP 1561
Query: 238 RQFFTFGNTSTWLDWNLSQSYDSTIVGVTWPIVFRVTCY*IWGWKNDRFF 89
FF S WL NL + ++T W + F V + +W W+N+ F
Sbjct: 1562 HSFF-LCPLSDWLQMNLMRKKNNTSQEY-WRVCFGVAVWRLWFWRNNFLF 1609
>ref|XP_006449044.1| hypothetical protein CICLE_v10014034mg [Citrus clementina]
gi|557551655|gb|ESR62284.1| hypothetical protein
CICLE_v10014034mg [Citrus clementina]
Length = 1534
Score = 56.2 bits (134), Expect = 7e-06
Identities = 36/92 (39%), Positives = 43/92 (46%), Gaps = 1/92 (1%)
Frame = -3
Query: 460 WKKIMTIQRATSI-FFLWQV*WGRLKTKVFLASRGMSIDLCCLDSACFFESDIHALRDCS 284
W I T + S+ FLWQ LKTK LA R + I CC E DIHALRDCS
Sbjct: 50 WTLIWTWKGPQSVRVFLWQAFHAGLKTKAELARRHLPISTCCDCCGAVCEDDIHALRDCS 109
Query: 283 VTMAVWKLLVPFQHWRQFFTFGNTSTWLDWNL 188
+ W ++ RQ F + WL NL
Sbjct: 110 LVKQFWINIITISK-RQGFFNSRLNGWLRSNL 140