BLASTX nr result
ID: Catharanthus22_contig00042933
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Catharanthus22_contig00042933
(716 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_004959141.1| PREDICTED: putative ribonuclease H protein A... 73 1e-19
ref|XP_004306074.1| PREDICTED: putative ribonuclease H protein A... 87 2e-18
gb|ABD28505.2| RNA-directed DNA polymerase (Reverse transcriptas... 85 8e-18
gb|EOY24339.1| RNA-directed DNA polymerase (Reverse transcriptas... 80 2e-17
gb|EEE69154.1| hypothetical protein OsJ_28290 [Oryza sativa Japo... 79 2e-17
emb|CCA66044.1| hypothetical protein [Beta vulgaris subsp. vulga... 84 8e-17
ref|XP_004296207.1| PREDICTED: uncharacterized protein LOC101297... 73 1e-16
gb|EMJ04651.1| hypothetical protein PRUPE_ppa022115mg [Prunus pe... 82 1e-16
gb|EMJ18520.1| hypothetical protein PRUPE_ppa019733mg [Prunus pe... 82 1e-16
gb|AAX94970.1| retrotransposon protein, putative, unclassified [... 73 1e-16
gb|EEE62189.1| hypothetical protein OsJ_16976 [Oryza sativa Japo... 73 1e-16
ref|XP_002438972.1| hypothetical protein SORBIDRAFT_10g029210 [S... 71 2e-16
gb|EAY96391.1| hypothetical protein OsI_18290 [Oryza sativa Indi... 71 5e-16
ref|XP_006493638.1| PREDICTED: putative ribonuclease H protein A... 71 1e-15
gb|EEC74955.1| hypothetical protein OsI_10942 [Oryza sativa Indi... 62 2e-15
ref|XP_004289445.1| PREDICTED: putative ribonuclease H protein A... 71 2e-15
gb|EAY85477.1| hypothetical protein OsI_06852 [Oryza sativa Indi... 72 4e-15
gb|AAD20714.1| putative non-LTR retroelement reverse transcripta... 79 5e-15
gb|AAD24831.1| putative non-LTR retroelement reverse transcripta... 79 5e-15
gb|EMJ08998.1| hypothetical protein PRUPE_ppa024472mg, partial [... 74 5e-15
>ref|XP_004959141.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Setaria
italica]
Length = 950
Score = 73.2 bits (178), Expect(2) = 1e-19
Identities = 34/105 (32%), Positives = 59/105 (56%), Gaps = 1/105 (0%)
Frame = -1
Query: 710 YLGHPIIHGRTRTSLYEFILAKVRKK-SGWKMKTLFRVKRLILIQTVASTQPYYAMQITK 534
YLG P+ GR+RT + ++ +V K+ GWK K L + + LI+ VA P YAM
Sbjct: 325 YLGLPVYMGRSRTQTFAYLKDRVWKRIHGWKEKLLSKAGKETLIKAVAQAIPSYAMACFD 384
Query: 533 LPCGFLDDMESLYCKSFWGEAGNQRKIQPISWDVICVAKENGGLG 399
+ D++ ++ C+ +W + + K+ +SW+++ K+ GGLG
Sbjct: 385 ITKSVSDEISTMICRFWWAQMEKENKVHWVSWEILSSRKDEGGLG 429
Score = 50.1 bits (118), Expect(2) = 1e-19
Identities = 32/86 (37%), Positives = 50/86 (58%), Gaps = 2/86 (2%)
Frame = -2
Query: 418 RRMEGWVSTVKSLRLMNTALLAKLA*RLIHNPSQPWAKVLTRKY--GSPLIKRSWSSGVS 245
R+ EG + ++L L N A+LAK A R++ NP A++LT +Y L++ S SG+S
Sbjct: 422 RKDEGGLG-YRNLHLFNLAMLAKQAWRILQNPESLCARLLTAQYCPSGDLLQVSEGSGIS 480
Query: 244 PIWRGILHGNEAL*NCLPSSLADSNE 167
WR I+ G +AL N L + D ++
Sbjct: 481 YTWRSIVRGFKALKNGLIWRIGDGSQ 506
>ref|XP_004306074.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Fragaria
vesca subsp. vesca]
Length = 407
Score = 86.7 bits (213), Expect(2) = 2e-18
Identities = 41/108 (37%), Positives = 62/108 (57%), Gaps = 1/108 (0%)
Frame = -1
Query: 716 GMYLGHPIIHGRTRTSLYEFILAKVRKK-SGWKMKTLFRVKRLILIQTVASTQPYYAMQI 540
G YLG P+IH R Y+ I +V+ + S WK K L RL LIQ+V+S P YAMQ
Sbjct: 11 GKYLGMPLIHSRVNKHTYDGIFDQVQSRLSSWKSKVLSMAGRLTLIQSVSSAIPNYAMQT 70
Query: 539 TKLPCGFLDDMESLYCKSFWGEAGNQRKIQPISWDVICVAKENGGLGV 396
K P ++++ L WG+ ++K+ ++WDV+C K+ G +G+
Sbjct: 71 AKFPVSLCENLDKLNRNFLWGDTEIKKKVHLVNWDVVCQPKQLGDIGI 118
Score = 32.7 bits (73), Expect(2) = 2e-18
Identities = 24/76 (31%), Positives = 35/76 (46%), Gaps = 4/76 (5%)
Frame = -2
Query: 391 VKSLRLMNTALLAKLA*RLIHNPSQPWAKVLTRKY--GSPLIKRSWSSGV--SPIWRGIL 224
+K MN A+LAK++ R+ WA + KY L ++ V S WRGI+
Sbjct: 118 IKKTEDMNQAMLAKISWRMFQCDKGLWASMFAEKYLKNCCLFDDNYEVAVDCSSTWRGII 177
Query: 223 HGNEAL*NCLPSSLAD 176
G + L + L L D
Sbjct: 178 FGAKLLRSNLKWRLGD 193
>gb|ABD28505.2| RNA-directed DNA polymerase (Reverse transcriptase);
Polynucleotidyl transferase, Ribonuclease H fold
[Medicago truncatula]
Length = 729
Score = 84.7 bits (208), Expect(2) = 8e-18
Identities = 44/107 (41%), Positives = 60/107 (56%), Gaps = 1/107 (0%)
Frame = -1
Query: 716 GMYLGHPIIHGRTRTSLYEFILAKVRKK-SGWKMKTLFRVKRLILIQTVASTQPYYAMQI 540
G YLG I GRT + I+ K++ K SGWK + L R+ L + V S+ PYY MQ
Sbjct: 178 GKYLGANITPGRTSRGHFNHIINKIQNKLSGWKQQCLSLAGRITLSKFVISSIPYYHMQY 237
Query: 539 TKLPCGFLDDMESLYCKSFWGEAGNQRKIQPISWDVICVAKENGGLG 399
K+P D++E + WG++ RK +SWDV C+ K NGGLG
Sbjct: 238 AKIPKTICDEIEKIQRGFVWGDSNQGRKAHLVSWDVCCLPKMNGGLG 284
Score = 32.3 bits (72), Expect(2) = 8e-18
Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
Frame = -2
Query: 373 MNTALLAKLA*RLIHNPSQPWAKVLTRKYG-SPLIKRSWSSGV--SPIWRGIL 224
MN A L K+ LI P + W +VL KYG + + + SS SP+W+ I+
Sbjct: 291 MNEAFLMKMLWNLIKQPDKLWCRVLYSKYGRNNDLNNNISSQPYDSPLWKAIV 343
>gb|EOY24339.1| RNA-directed DNA polymerase (Reverse transcriptase),
Polynucleotidyl transferase, Ribonuclease H fold-like
protein [Theobroma cacao]
Length = 616
Score = 79.7 bits (195), Expect(2) = 2e-17
Identities = 47/109 (43%), Positives = 63/109 (57%), Gaps = 2/109 (1%)
Frame = -1
Query: 716 GMYLGHPIIHGRTRTSLYEFILAKVRKK-SGWKMKTLFRVKRLILIQTVASTQPYYAMQI 540
G YLG P+ HGR R + ++F+ KVR K SGWK +L L L+++V ST PYY MQI
Sbjct: 49 GNYLGVPLFHGRKRITSFKFLEDKVRSKLSGWKAFSLSFAGILTLVKSVLSTIPYYVMQI 108
Query: 539 TKLPCGFLDDMESLYCKSF-WGEAGNQRKIQPISWDVICVAKENGGLGV 396
+P ME YC++F WG + ++I I + IC KE LGV
Sbjct: 109 VSIPLDSCKRMER-YCQNFLWGGDADHKRIHLIRCNQICRPKEERSLGV 156
Score = 36.2 bits (82), Expect(2) = 2e-17
Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
Frame = -2
Query: 391 VKSLRLMNTALLAKLA*RLIHNPSQPWAKVLTRKYGSPLIKRS---WSSGVSPIWRGI 227
VK L +MN A L KL +L+ P W ++ KY + +RS + G S W +
Sbjct: 156 VKRLHVMNNAFLMKLLWQLVTRPKSLWVSIIRGKYNFNMDRRSSSIYCHGASHTWNAL 213
>gb|EEE69154.1| hypothetical protein OsJ_28290 [Oryza sativa Japonica Group]
Length = 615
Score = 79.0 bits (193), Expect(2) = 2e-17
Identities = 37/105 (35%), Positives = 63/105 (60%), Gaps = 1/105 (0%)
Frame = -1
Query: 710 YLGHPIIHGRTRTSLYEFILAKVRKK-SGWKMKTLFRVKRLILIQTVASTQPYYAMQITK 534
YLG PI GR+R+ + ++ +V K+ GWK + L + + ILI++V + P YAM
Sbjct: 206 YLGLPIYMGRSRSQTFSYLKDRVWKRLQGWKERLLSKAGKEILIKSVVQSIPTYAMSCFD 265
Query: 533 LPCGFLDDMESLYCKSFWGEAGNQRKIQPISWDVICVAKENGGLG 399
L +++ SL C+ +W + N+ K+ +SW+++C KE GG+G
Sbjct: 266 LTKTLCNELGSLVCRFWWAQQENENKVHWVSWELLCRRKEQGGIG 310
Score = 37.0 bits (84), Expect(2) = 2e-17
Identities = 28/74 (37%), Positives = 36/74 (48%), Gaps = 3/74 (4%)
Frame = -2
Query: 418 RRMEGWVSTVKSLRLMNTALLAKLA*RLIHNPSQPWAKVLTRKY---GSPLIKRSWSSGV 248
RR E + L L N A+LA+ RLI P A+VL KY G + R G+
Sbjct: 302 RRKEQGGIGYRDLHLFNLAMLARQGWRLIMEPMSLCAQVLRAKYFPTGDLMAVRE-KPGI 360
Query: 247 SPIWRGILHGNEAL 206
S WR I+ G +AL
Sbjct: 361 SYSWRSIVRGIQAL 374
>emb|CCA66044.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
Length = 1355
Score = 84.0 bits (206), Expect(2) = 8e-17
Identities = 40/105 (38%), Positives = 63/105 (60%), Gaps = 1/105 (0%)
Frame = -1
Query: 710 YLGHPIIHGRTRTSLYEFILAKVRKK-SGWKMKTLFRVKRLILIQTVASTQPYYAMQITK 534
YLG P I GR+RT++++ ++ ++ KK GWK K L R + IL+++V P Y M + K
Sbjct: 754 YLGIPSITGRSRTAIFDSLMDRIWKKLQGWKEKLLSRAGKEILLKSVIQAIPTYLMGVYK 813
Query: 533 LPCGFLDDMESLYCKSFWGEAGNQRKIQPISWDVICVAKENGGLG 399
LPC + + S + +WG + QR+I +WD +C K GG+G
Sbjct: 814 LPCSIIQKIHSAMARFWWGSSDTQRRIHWKNWDSLCTLKCFGGMG 858
Score = 29.6 bits (65), Expect(2) = 8e-17
Identities = 15/36 (41%), Positives = 21/36 (58%)
Frame = -2
Query: 388 KSLRLMNTALLAKLA*RLIHNPSQPWAKVLTRKYGS 281
+ LR+ N ALL + A RL+ P A+V+ KY S
Sbjct: 860 RDLRVFNDALLGRQAWRLVREPHSLLARVMKAKYYS 895
>ref|XP_004296207.1| PREDICTED: uncharacterized protein LOC101297422 [Fragaria vesca
subsp. vesca]
Length = 1096
Score = 73.2 bits (178), Expect(2) = 1e-16
Identities = 35/105 (33%), Positives = 58/105 (55%), Gaps = 1/105 (0%)
Frame = -1
Query: 710 YLGHPIIHGRTRTSLYEFILAKVRKKS-GWKMKTLFRVKRLILIQTVASTQPYYAMQITK 534
YLG P ++ + F+ ++RK++ GW+ KTL + +LI+ V + P Y M +
Sbjct: 515 YLGLPTELSYSKEKAFSFLCERIRKRTQGWRDKTLTIAGKEVLIKAVVQSIPTYIMSCFE 574
Query: 533 LPCGFLDDMESLYCKSFWGEAGNQRKIQPISWDVICVAKENGGLG 399
LP M+ L + +WG+ G+ RKI ++W+ +C K GGLG
Sbjct: 575 LPKHMCSAMQRLMARFWWGDKGDDRKIHWVAWEKLCTTKAEGGLG 619
Score = 40.0 bits (92), Expect(2) = 1e-16
Identities = 24/63 (38%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Frame = -2
Query: 388 KSLRLMNTALLAKLA*RLIHNPSQPWAKVLTRKY--GSPLIKRSWSSGVSPIWRGILHGN 215
+ +RL N ALLAK RLI P+ A+VL +Y ++ + G S WR IL G
Sbjct: 621 RDMRLFNMALLAKQGWRLIRQPNSLLAQVLKARYFPSESFMEAEVAKGCSFTWRSILKGR 680
Query: 214 EAL 206
+ L
Sbjct: 681 DLL 683
>gb|EMJ04651.1| hypothetical protein PRUPE_ppa022115mg [Prunus persica]
Length = 1755
Score = 81.6 bits (200), Expect(2) = 1e-16
Identities = 38/108 (35%), Positives = 62/108 (57%), Gaps = 1/108 (0%)
Frame = -1
Query: 710 YLGHPIIHGRTRTSLYEFILAKVRKK-SGWKMKTLFRVKRLILIQTVASTQPYYAMQITK 534
YLG P++ GR +T + ++ +V KK GW+ +TL + +L++ VA + P Y M
Sbjct: 1168 YLGLPMMLGRNKTVCFRYLKERVWKKLQGWREQTLSIAGKEVLLKVVAQSIPLYVMSCFL 1227
Query: 533 LPCGFLDDMESLYCKSFWGEAGNQRKIQPISWDVICVAKENGGLGVNC 390
LP G ++E + + +WG+ G RKI + W+ +C AK GG+G C
Sbjct: 1228 LPQGLCHEIEQMMARFWWGQQGENRKIHWMRWERLCKAKTEGGMGFRC 1275
Score = 31.2 bits (69), Expect(2) = 1e-16
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Frame = -2
Query: 388 KSLRLMNTALLAKLA*RLIHNPSQPWAKVLTRKY--GSPLIKRSWSSGVSPIWRGILHGN 215
+ L+ N A+LAK RL+HNP +++L KY + + + S S +W+ I
Sbjct: 1274 RCLQAFNMAMLAKQGWRLVHNPHSLASRLLKAKYFPQTNFWEATLGSRPSCVWKSIWTAR 1333
Query: 214 EAL 206
+ L
Sbjct: 1334 KVL 1336
>gb|EMJ18520.1| hypothetical protein PRUPE_ppa019733mg [Prunus persica]
Length = 1275
Score = 81.6 bits (200), Expect(2) = 1e-16
Identities = 38/108 (35%), Positives = 62/108 (57%), Gaps = 1/108 (0%)
Frame = -1
Query: 710 YLGHPIIHGRTRTSLYEFILAKVRKK-SGWKMKTLFRVKRLILIQTVASTQPYYAMQITK 534
YLG P++ GR +T + ++ +V KK GW+ +TL + +L++ VA + P Y M
Sbjct: 688 YLGLPMMLGRNKTVCFRYLKERVWKKLQGWREQTLSIAGKEVLLKVVAQSIPLYVMSCFL 747
Query: 533 LPCGFLDDMESLYCKSFWGEAGNQRKIQPISWDVICVAKENGGLGVNC 390
LP G ++E + + +WG+ G RKI + W+ +C AK GG+G C
Sbjct: 748 LPQGLCHEIEQMMARFWWGQQGENRKIHWMRWERLCKAKTEGGMGFRC 795
Score = 31.2 bits (69), Expect(2) = 1e-16
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Frame = -2
Query: 388 KSLRLMNTALLAKLA*RLIHNPSQPWAKVLTRKY--GSPLIKRSWSSGVSPIWRGILHGN 215
+ L+ N A+LAK RL+HNP +++L KY + + + S S +W+ I
Sbjct: 794 RCLQAFNMAMLAKQGWRLVHNPHSLASRLLKAKYFPQTNFWEATLGSRPSCVWKSIWTAR 853
Query: 214 EAL 206
+ L
Sbjct: 854 KVL 856
>gb|AAX94970.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group] gi|77550533|gb|ABA93330.1|
retrotransposon protein, putative, unclassified [Oryza
sativa Japonica Group]
Length = 816
Score = 72.8 bits (177), Expect(2) = 1e-16
Identities = 37/105 (35%), Positives = 56/105 (53%), Gaps = 1/105 (0%)
Frame = -1
Query: 710 YLGHPIIHGRTRTSLYEFILAKVRKK-SGWKMKTLFRVKRLILIQTVASTQPYYAMQITK 534
YLG P GR + Y++++ ++ K+ S W K L + +LI++V P Y M + K
Sbjct: 20 YLGLPTPSGRMKAGKYQYLMDRLMKRLSDWAEKFLSMGGKEVLIKSVIQALPTYVMNVFK 79
Query: 533 LPCGFLDDMESLYCKSFWGEAGNQRKIQPISWDVICVAKENGGLG 399
LP GF +D + K +WGE N+RK SW + K GG+G
Sbjct: 80 LPSGFCEDYMKMIRKFWWGEEKNRRKTHWTSWQQLIKPKSKGGIG 124
Score = 40.0 bits (92), Expect(2) = 1e-16
Identities = 25/63 (39%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Frame = -2
Query: 388 KSLRLMNTALLAKLA*RLIHNPSQPWAKVLTRKY--GSPLIKRSWSSGVSPIWRGILHGN 215
K L++ N ALLA+ A RLI AK++ +Y LI + + S +WRGI HG
Sbjct: 126 KDLKIFNQALLARQAWRLIQFLDSLCAKLMKARYFPNGHLIDTVFPTDSSEVWRGICHGL 185
Query: 214 EAL 206
E L
Sbjct: 186 ELL 188
>gb|EEE62189.1| hypothetical protein OsJ_16976 [Oryza sativa Japonica Group]
Length = 653
Score = 72.8 bits (177), Expect(2) = 1e-16
Identities = 37/105 (35%), Positives = 56/105 (53%), Gaps = 1/105 (0%)
Frame = -1
Query: 710 YLGHPIIHGRTRTSLYEFILAKVRKK-SGWKMKTLFRVKRLILIQTVASTQPYYAMQITK 534
YLG P GR + Y++++ ++ K+ S W K L + +LI++V P Y M + K
Sbjct: 20 YLGLPTPSGRMKAGKYQYLMDRLMKRLSDWAEKFLSMGGKEVLIKSVIQALPTYVMNVFK 79
Query: 533 LPCGFLDDMESLYCKSFWGEAGNQRKIQPISWDVICVAKENGGLG 399
LP GF +D + K +WGE N+RK SW + K GG+G
Sbjct: 80 LPSGFCEDYMKMIRKFWWGEEKNRRKTHWTSWQQLIKPKSKGGIG 124
Score = 40.0 bits (92), Expect(2) = 1e-16
Identities = 25/63 (39%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Frame = -2
Query: 388 KSLRLMNTALLAKLA*RLIHNPSQPWAKVLTRKY--GSPLIKRSWSSGVSPIWRGILHGN 215
K L++ N ALLA+ A RLI AK++ +Y LI + + S +WRGI HG
Sbjct: 126 KDLKIFNQALLARQAWRLIQFLDSLCAKLMKARYFPNGHLIDTVFPTDSSEVWRGICHGL 185
Query: 214 EAL 206
E L
Sbjct: 186 ELL 188
>ref|XP_002438972.1| hypothetical protein SORBIDRAFT_10g029210 [Sorghum bicolor]
gi|241917195|gb|EER90339.1| hypothetical protein
SORBIDRAFT_10g029210 [Sorghum bicolor]
Length = 240
Score = 70.9 bits (172), Expect(2) = 2e-16
Identities = 36/97 (37%), Positives = 54/97 (55%), Gaps = 1/97 (1%)
Frame = -1
Query: 686 GRTRTSLYEFILAKVRKK-SGWKMKTLFRVKRLILIQTVASTQPYYAMQITKLPCGFLDD 510
GR+R+ + ++ +V K+ GWK K L + + ILI+ VA P YAM L D+
Sbjct: 2 GRSRSRTFAYLKDRVWKRIQGWKEKLLSKAGKEILIKAVAQAIPTYAMSCFDLTKTLCDE 61
Query: 509 MESLYCKSFWGEAGNQRKIQPISWDVICVAKENGGLG 399
+ ++ C W + N+ K+ ISWD +C KE GGLG
Sbjct: 62 ISTMICCYLWSQQDNKNKMHWISWDTMCRRKEEGGLG 98
Score = 41.2 bits (95), Expect(2) = 2e-16
Identities = 30/85 (35%), Positives = 43/85 (50%), Gaps = 2/85 (2%)
Frame = -2
Query: 418 RRMEGWVSTVKSLRLMNTALLAKLA*RLIHNPSQPWAKVLTRKY--GSPLIKRSWSSGVS 245
R+ EG + + L L N A+LA+ A RL+ P +VL KY L+ + G+S
Sbjct: 91 RKEEGGLG-FRDLHLFNLAMLARQAWRLLMTPDSLCGQVLKAKYYRNCGLLDAKEAPGIS 149
Query: 244 PIWRGILHGNEAL*NCLPSSLADSN 170
WR IL G +AL + L + D N
Sbjct: 150 YTWRSILRGIKALKDGLIWCVGDGN 174
>gb|EAY96391.1| hypothetical protein OsI_18290 [Oryza sativa Indica Group]
Length = 653
Score = 70.9 bits (172), Expect(2) = 5e-16
Identities = 37/105 (35%), Positives = 55/105 (52%), Gaps = 1/105 (0%)
Frame = -1
Query: 710 YLGHPIIHGRTRTSLYEFILAKVRKK-SGWKMKTLFRVKRLILIQTVASTQPYYAMQITK 534
YLG P GR + Y+ ++ ++ K+ S W K L + +LI++V P Y M + K
Sbjct: 20 YLGLPTPSGRMKAGKYQSLMDRLMKRLSDWAEKFLSMGGKEVLIKSVIQALPTYVMSVFK 79
Query: 533 LPCGFLDDMESLYCKSFWGEAGNQRKIQPISWDVICVAKENGGLG 399
LP GF +D + K +WGE N+RK SW + K GG+G
Sbjct: 80 LPSGFCEDYMKMIRKFWWGEEKNRRKTHWTSWQQLIKPKSKGGIG 124
Score = 40.0 bits (92), Expect(2) = 5e-16
Identities = 25/63 (39%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Frame = -2
Query: 388 KSLRLMNTALLAKLA*RLIHNPSQPWAKVLTRKY--GSPLIKRSWSSGVSPIWRGILHGN 215
K L++ N ALLA+ A RLI AK++ +Y LI + + S +WRGI HG
Sbjct: 126 KDLKIFNQALLARQAWRLIQFLDSLCAKLMKARYFPNGHLIDTVFPTDSSEVWRGICHGL 185
Query: 214 EAL 206
E L
Sbjct: 186 ELL 188
>ref|XP_006493638.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus
sinensis]
Length = 360
Score = 71.2 bits (173), Expect(2) = 1e-15
Identities = 38/102 (37%), Positives = 53/102 (51%), Gaps = 1/102 (0%)
Frame = -1
Query: 698 PIIHGRTRTSLYEFILAKVRKKS-GWKMKTLFRVKRLILIQTVASTQPYYAMQITKLPCG 522
PIIH R Y+ IL KV + W L R+ L Q+V P YAMQ TK+P G
Sbjct: 2 PIIHSRVNKLTYQGILDKVNQHLLRWNAIHLSLAGRITLTQSVIQAIPIYAMQTTKIPFG 61
Query: 521 FLDDMESLYCKSFWGEAGNQRKIQPISWDVICVAKENGGLGV 396
+ ++ + W A +++KI + WD IC K +GGLG+
Sbjct: 62 IREKIDQACRRFIWSGAADKKKISLVKWDTICQLKPSGGLGL 103
Score = 38.5 bits (88), Expect(2) = 1e-15
Identities = 27/68 (39%), Positives = 33/68 (48%), Gaps = 10/68 (14%)
Frame = -2
Query: 391 VKSLRLMNTALLAKLA*RLIHNPSQPWAKVLTRKYG-------SPLIKRSWS---SGVSP 242
+K L LMN ALL K+ LI +P+ W KVL KYG S L + S V
Sbjct: 103 LKQLNLMNDALLMKIGWVLIASPNSLWVKVLLSKYGLAPNALPSTLPTKCGSYMWKAVGG 162
Query: 241 IWRGILHG 218
IW +L G
Sbjct: 163 IWHEVLKG 170
>gb|EEC74955.1| hypothetical protein OsI_10942 [Oryza sativa Indica Group]
Length = 961
Score = 62.4 bits (150), Expect(2) = 2e-15
Identities = 34/105 (32%), Positives = 52/105 (49%), Gaps = 1/105 (0%)
Frame = -1
Query: 710 YLGHPIIHGRTRTSLYEFILAKVRKK-SGWKMKTLFRVKRLILIQTVASTQPYYAMQITK 534
YLG P GR + ++ + + K+ S W K L + +LI++V P Y M + +
Sbjct: 490 YLGLPTPLGRMKAGRFQALKERFEKRLSEWCEKNLSMGGKEVLIKSVLQALPTYVMSVFR 549
Query: 533 LPCGFLDDMESLYCKSFWGEAGNQRKIQPISWDVICVAKENGGLG 399
LP ++ L K +WGE N RK+ ISW + K GG+G
Sbjct: 550 LPASLCEEYMQLIRKFWWGEDQNNRKVHWISWQQLIKPKGQGGIG 594
Score = 46.2 bits (108), Expect(2) = 2e-15
Identities = 30/76 (39%), Positives = 42/76 (55%), Gaps = 2/76 (2%)
Frame = -2
Query: 388 KSLRLMNTALLAKLA*RLIHNPSQPWAKVLTRKY--GSPLIKRSWSSGVSPIWRGILHGN 215
+ L+L N ALLA+ A RLI PS A+VL KY LI ++ S W+GI+HG
Sbjct: 596 RDLKLFNQALLARQAWRLIQYPSSLCAQVLKAKYFPSGDLIDTAFPVDSSETWKGIMHGL 655
Query: 214 EAL*NCLPSSLADSNE 167
E L L ++D ++
Sbjct: 656 ELLKKGLIWRISDGSK 671
>ref|XP_004289445.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Fragaria
vesca subsp. vesca]
Length = 719
Score = 71.2 bits (173), Expect(2) = 2e-15
Identities = 30/79 (37%), Positives = 46/79 (58%)
Frame = -1
Query: 632 SGWKMKTLFRVKRLILIQTVASTQPYYAMQITKLPCGFLDDMESLYCKSFWGEAGNQRKI 453
SGW KTL RL L+Q+V ++ P YAMQ KLP + ++ WG++ ++KI
Sbjct: 328 SGWSSKTLSMAGRLTLVQSVTASIPIYAMQTAKLPLSLCESIDKANINFLWGDSNEKKKI 387
Query: 452 QPISWDVICVAKENGGLGV 396
++W+ +C K GGLG+
Sbjct: 388 HLVNWESVCKPKHRGGLGL 406
Score = 37.4 bits (85), Expect(2) = 2e-15
Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 5/61 (8%)
Frame = -2
Query: 373 MNTALLAKLA*RLIHNPSQPWAKVLTRKYGSPLIKRSWSSGVSP-----IWRGILHGNEA 209
MN A+LAK + R+ N WA + +KY S S+ ++P WRGI+HG E
Sbjct: 412 MNQAMLAKASWRIFQNDHGLWADIYRKKYLQDCCIES-SNSIAPADCSNTWRGIVHGVEL 470
Query: 208 L 206
+
Sbjct: 471 M 471
>gb|EAY85477.1| hypothetical protein OsI_06852 [Oryza sativa Indica Group]
Length = 313
Score = 72.4 bits (176), Expect(2) = 4e-15
Identities = 36/104 (34%), Positives = 53/104 (50%)
Frame = -1
Query: 710 YLGHPIIHGRTRTSLYEFILAKVRKKSGWKMKTLFRVKRLILIQTVASTQPYYAMQITKL 531
Y G + GR++ Y ++ +V K GWK K L R + ILI+ V+ P +AM L
Sbjct: 132 YFGLVVYMGRSKAKTYNYLKERVWKIQGWKEKLLSRAWKDILIKAVSQAIPTFAMSCFDL 191
Query: 530 PCGFLDDMESLYCKSFWGEAGNQRKIQPISWDVICVAKENGGLG 399
D + L C FW + + K+ ISW+ +C K+ GGLG
Sbjct: 192 TKTLCDKISMLICHFFWAQQDRENKMHWISWEHLCSQKDKGGLG 235
Score = 35.4 bits (80), Expect(2) = 4e-15
Identities = 22/61 (36%), Positives = 30/61 (49%)
Frame = -2
Query: 388 KSLRLMNTALLAKLA*RLIHNPSQPWAKVLTRKYGSPLIKRSWSSGVSPIWRGILHGNEA 209
+ L L N +LA+ A +L+ NP A VL KY G+S WR I+ G +A
Sbjct: 237 RDLHLFNLGMLARQAWQLLSNPESLCAWVLRAKYFHEGKLLEVGPGISYSWRSIVRGVQA 296
Query: 208 L 206
L
Sbjct: 297 L 297
>gb|AAD20714.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1750
Score = 78.6 bits (192), Expect(2) = 5e-15
Identities = 40/107 (37%), Positives = 64/107 (59%), Gaps = 1/107 (0%)
Frame = -1
Query: 716 GMYLGHPIIHGRTRTSLYEFILAKVRKK-SGWKMKTLFRVKRLILIQTVASTQPYYAMQI 540
G YLG P GR + ++E+I+ +V+K+ S W + L + I++++VA P YAM
Sbjct: 1130 GKYLGLPEQFGRKKKEMFEYIIDRVKKRTSTWSARFLSPAGKEIMLKSVALAMPVYAMSC 1189
Query: 539 TKLPCGFLDDMESLYCKSFWGEAGNQRKIQPISWDVICVAKENGGLG 399
KLP G + ++ESL +W +A NQR I ++W + +K+ GGLG
Sbjct: 1190 FKLPKGIVSEIESLLMNFWWEKASNQRGIPWVAWKRLQYSKKEGGLG 1236
Score = 28.9 bits (63), Expect(2) = 5e-15
Identities = 15/34 (44%), Positives = 21/34 (61%)
Frame = -2
Query: 388 KSLRLMNTALLAKLA*RLIHNPSQPWAKVLTRKY 287
+ L N ALLAK A RLI P+ +A+V+ +Y
Sbjct: 1238 RDLAKFNDALLAKQAWRLIQYPNSLFARVMKARY 1271
>gb|AAD24831.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1524
Score = 78.6 bits (192), Expect(2) = 5e-15
Identities = 40/107 (37%), Positives = 64/107 (59%), Gaps = 1/107 (0%)
Frame = -1
Query: 716 GMYLGHPIIHGRTRTSLYEFILAKVRKK-SGWKMKTLFRVKRLILIQTVASTQPYYAMQI 540
G YLG P GR + ++E+I+ +V+K+ S W + L + I++++VA P YAM
Sbjct: 904 GKYLGLPEQFGRKKKEMFEYIIDRVKKRTSTWSARFLSPAGKEIMLKSVALAMPVYAMSC 963
Query: 539 TKLPCGFLDDMESLYCKSFWGEAGNQRKIQPISWDVICVAKENGGLG 399
KLP G + ++ESL +W +A NQR I ++W + +K+ GGLG
Sbjct: 964 FKLPKGIVSEIESLLMNFWWEKASNQRGIPWVAWKRLQYSKKEGGLG 1010
Score = 28.9 bits (63), Expect(2) = 5e-15
Identities = 15/34 (44%), Positives = 21/34 (61%)
Frame = -2
Query: 388 KSLRLMNTALLAKLA*RLIHNPSQPWAKVLTRKY 287
+ L N ALLAK A RLI P+ +A+V+ +Y
Sbjct: 1012 RDLAKFNDALLAKQAWRLIQYPNSLFARVMKARY 1045
>gb|EMJ08998.1| hypothetical protein PRUPE_ppa024472mg, partial [Prunus persica]
Length = 920
Score = 73.9 bits (180), Expect(2) = 5e-15
Identities = 36/107 (33%), Positives = 59/107 (55%), Gaps = 1/107 (0%)
Frame = -1
Query: 716 GMYLGHPIIHGRTRTSLYEFILAKVRKKS-GWKMKTLFRVKRLILIQTVASTQPYYAMQI 540
G YLG P + GR++ + ++ +V+ K GWK +L + +LI+ +A+ P + MQ
Sbjct: 329 GNYLGMPTMWGRSKKAAMNYVKERVKDKILGWKQSSLSLAGKEVLIKAIATAIPTFPMQC 388
Query: 539 TKLPCGFLDDMESLYCKSFWGEAGNQRKIQPISWDVICVAKENGGLG 399
K G D++ S K +WG+ + KI SW +C+ K +GGLG
Sbjct: 389 FKFTKGLCDEINSEMAKFWWGKPNSDTKIHWKSWSALCLPKSDGGLG 435
Score = 33.5 bits (75), Expect(2) = 5e-15
Identities = 23/56 (41%), Positives = 25/56 (44%)
Frame = -2
Query: 388 KSLRLMNTALLAKLA*RLIHNPSQPWAKVLTRKYGSPLIKRSWSSGVSPIWRGILH 221
+ L N ALL K A RLIH P+ WAK LIK S G I I H
Sbjct: 437 RDLNTFNLALLGKQAWRLIHEPNSYWAK---------LIKASLLEGREVIKENIRH 483