BLASTX nr result
ID: Catharanthus22_contig00040694
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Catharanthus22_contig00040694
(265 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_006338861.1| PREDICTED: probable RNA-dependent RNA polyme... 149 3e-34
ref|XP_004241116.1| PREDICTED: probable RNA-dependent RNA polyme... 149 4e-34
ref|XP_006381765.1| hypothetical protein POPTR_0006s17780g [Popu... 143 3e-32
ref|XP_006380470.1| hypothetical protein POPTR_0007s06560g [Popu... 143 3e-32
ref|XP_006380469.1| hypothetical protein POPTR_0007s06560g [Popu... 143 3e-32
ref|XP_002310026.1| hypothetical protein POPTRDRAFT_562705 [Popu... 143 3e-32
ref|XP_002336366.1| rna-dependent RNA polymerase [Populus tricho... 143 3e-32
ref|NP_179581.2| probable RNA-dependent RNA polymerase 3 [Arabid... 135 4e-30
gb|AAC62125.1| hypothetical protein [Arabidopsis thaliana] 135 4e-30
gb|EXB59780.1| putative RNA-dependent RNA polymerase 3 [Morus no... 134 1e-29
ref|XP_006296898.1| hypothetical protein CARUB_v10012890mg [Caps... 134 1e-29
ref|XP_006353487.1| PREDICTED: probable RNA-dependent RNA polyme... 133 3e-29
ref|XP_006408908.1| hypothetical protein EUTSA_v10001897mg [Eutr... 132 4e-29
ref|XP_004251631.1| PREDICTED: probable RNA-dependent RNA polyme... 132 4e-29
ref|XP_002883963.1| RNA-dependent RNA polymerase family protein ... 132 4e-29
ref|NP_179583.3| probable RNA-dependent RNA polymerase 5 [Arabid... 132 6e-29
gb|AAC62123.1| hypothetical protein [Arabidopsis thaliana] 132 6e-29
gb|EMJ05474.1| hypothetical protein PRUPE_ppa001584mg [Prunus pe... 131 8e-29
ref|XP_006451272.1| hypothetical protein CICLE_v10007331mg [Citr... 130 1e-28
ref|XP_006451271.1| hypothetical protein CICLE_v10007331mg [Citr... 130 1e-28
>ref|XP_006338861.1| PREDICTED: probable RNA-dependent RNA polymerase 3-like [Solanum
tuberosum]
Length = 911
Score = 149 bits (377), Expect = 3e-34
Identities = 68/88 (77%), Positives = 81/88 (92%)
Frame = +1
Query: 1 SESFYIIGTADPTGLLDTNEVCVILDNGQLSGDVLVYRNPGLHFGDIHILKAVYVKELED 180
S+SFY++GTADPTG+L++NEVCVILDNGQ+SG VLVYRNPGLHFGD+H++KA YV+EL D
Sbjct: 632 SDSFYLMGTADPTGVLESNEVCVILDNGQISGRVLVYRNPGLHFGDVHVMKARYVEELAD 691
Query: 181 FIGNAKYGIFFSIKGQRSAAAEIANGDF 264
+G+AKYGIFFS KG RSAA EIANGDF
Sbjct: 692 VVGDAKYGIFFSTKGPRSAATEIANGDF 719
>ref|XP_004241116.1| PREDICTED: probable RNA-dependent RNA polymerase 3-like [Solanum
lycopersicum]
Length = 1011
Score = 149 bits (376), Expect = 4e-34
Identities = 68/88 (77%), Positives = 81/88 (92%)
Frame = +1
Query: 1 SESFYIIGTADPTGLLDTNEVCVILDNGQLSGDVLVYRNPGLHFGDIHILKAVYVKELED 180
S+SFY++GTADPTG+L++NEVCVILDNGQ+SG VLVYRNPGLHFGD+H++KA YV+EL D
Sbjct: 630 SDSFYLMGTADPTGVLESNEVCVILDNGQVSGRVLVYRNPGLHFGDVHVMKARYVEELAD 689
Query: 181 FIGNAKYGIFFSIKGQRSAAAEIANGDF 264
+G+AKYGIFFS KG RSAA EIANGDF
Sbjct: 690 VVGDAKYGIFFSTKGPRSAATEIANGDF 717
>ref|XP_006381765.1| hypothetical protein POPTR_0006s17780g [Populus trichocarpa]
gi|550336519|gb|ERP59562.1| hypothetical protein
POPTR_0006s17780g [Populus trichocarpa]
Length = 866
Score = 143 bits (360), Expect = 3e-32
Identities = 65/87 (74%), Positives = 78/87 (89%)
Frame = +1
Query: 4 ESFYIIGTADPTGLLDTNEVCVILDNGQLSGDVLVYRNPGLHFGDIHILKAVYVKELEDF 183
ES+Y++GTADPTGLL+++EVC+ILD GQ+SG+VLVYRNPGLHFGDIHILKA YV+ELEDF
Sbjct: 495 ESYYLMGTADPTGLLESDEVCIILDCGQVSGEVLVYRNPGLHFGDIHILKATYVRELEDF 554
Query: 184 IGNAKYGIFFSIKGQRSAAAEIANGDF 264
+GNAKY IFF KG RS A E++ GDF
Sbjct: 555 VGNAKYAIFFPCKGPRSLADEMSGGDF 581
>ref|XP_006380470.1| hypothetical protein POPTR_0007s06560g [Populus trichocarpa]
gi|550334280|gb|ERP58267.1| hypothetical protein
POPTR_0007s06560g [Populus trichocarpa]
Length = 877
Score = 143 bits (360), Expect = 3e-32
Identities = 64/87 (73%), Positives = 78/87 (89%)
Frame = +1
Query: 4 ESFYIIGTADPTGLLDTNEVCVILDNGQLSGDVLVYRNPGLHFGDIHILKAVYVKELEDF 183
ES+Y++GTADPTGLL+++EVC+ILD GQ+SG+VL+YRNPGLHFGDIHILKA YV+ELEDF
Sbjct: 495 ESYYLMGTADPTGLLESDEVCIILDCGQISGEVLIYRNPGLHFGDIHILKATYVRELEDF 554
Query: 184 IGNAKYGIFFSIKGQRSAAAEIANGDF 264
+GNAKY IFF KG RS A E++ GDF
Sbjct: 555 VGNAKYAIFFPCKGPRSLADEMSGGDF 581
>ref|XP_006380469.1| hypothetical protein POPTR_0007s06560g [Populus trichocarpa]
gi|550334279|gb|ERP58266.1| hypothetical protein
POPTR_0007s06560g [Populus trichocarpa]
Length = 899
Score = 143 bits (360), Expect = 3e-32
Identities = 64/87 (73%), Positives = 78/87 (89%)
Frame = +1
Query: 4 ESFYIIGTADPTGLLDTNEVCVILDNGQLSGDVLVYRNPGLHFGDIHILKAVYVKELEDF 183
ES+Y++GTADPTGLL+++EVC+ILD GQ+SG+VL+YRNPGLHFGDIHILKA YV+ELEDF
Sbjct: 517 ESYYLMGTADPTGLLESDEVCIILDCGQISGEVLIYRNPGLHFGDIHILKATYVRELEDF 576
Query: 184 IGNAKYGIFFSIKGQRSAAAEIANGDF 264
+GNAKY IFF KG RS A E++ GDF
Sbjct: 577 VGNAKYAIFFPCKGPRSLADEMSGGDF 603
>ref|XP_002310026.1| hypothetical protein POPTRDRAFT_562705 [Populus trichocarpa]
Length = 406
Score = 143 bits (360), Expect = 3e-32
Identities = 65/87 (74%), Positives = 78/87 (89%)
Frame = +1
Query: 4 ESFYIIGTADPTGLLDTNEVCVILDNGQLSGDVLVYRNPGLHFGDIHILKAVYVKELEDF 183
ES+Y++GTADPTGLL+++EVC+ILD GQ+SG+VLVYRNPGLHFGDIHILKA YV+ELEDF
Sbjct: 299 ESYYLMGTADPTGLLESDEVCIILDCGQVSGEVLVYRNPGLHFGDIHILKATYVRELEDF 358
Query: 184 IGNAKYGIFFSIKGQRSAAAEIANGDF 264
+GNAKY IFF KG RS A E++ GDF
Sbjct: 359 VGNAKYAIFFPCKGPRSLADEMSGGDF 385
>ref|XP_002336366.1| rna-dependent RNA polymerase [Populus trichocarpa]
Length = 320
Score = 143 bits (360), Expect = 3e-32
Identities = 64/87 (73%), Positives = 78/87 (89%)
Frame = +1
Query: 4 ESFYIIGTADPTGLLDTNEVCVILDNGQLSGDVLVYRNPGLHFGDIHILKAVYVKELEDF 183
ES+Y++GTADPTGLL+++EVC+ILD GQ+SG+VL+YRNPGLHFGDIHILKA YV+ELEDF
Sbjct: 75 ESYYLMGTADPTGLLESDEVCIILDCGQISGEVLIYRNPGLHFGDIHILKATYVRELEDF 134
Query: 184 IGNAKYGIFFSIKGQRSAAAEIANGDF 264
+GNAKY IFF KG RS A E++ GDF
Sbjct: 135 VGNAKYAIFFPCKGPRSLADEMSGGDF 161
>ref|NP_179581.2| probable RNA-dependent RNA polymerase 3 [Arabidopsis thaliana]
gi|322967566|sp|O82190.2|RDR3_ARATH RecName:
Full=Probable RNA-dependent RNA polymerase 3;
Short=AtRDRP3; AltName: Full=RNA-directed RNA polymerase
3 gi|330251848|gb|AEC06942.1| probable RNA-dependent RNA
polymerase 3 [Arabidopsis thaliana]
Length = 992
Score = 135 bits (341), Expect = 4e-30
Identities = 62/87 (71%), Positives = 72/87 (82%)
Frame = +1
Query: 4 ESFYIIGTADPTGLLDTNEVCVILDNGQLSGDVLVYRNPGLHFGDIHILKAVYVKELEDF 183
ES+YI+GT DPTG L NE+CVIL +GQ+SGDVLVYRNPGLHFGDIH+LKA YVK LED+
Sbjct: 608 ESYYIMGTVDPTGELKENEICVILHSGQISGDVLVYRNPGLHFGDIHVLKATYVKALEDY 667
Query: 184 IGNAKYGIFFSIKGQRSAAAEIANGDF 264
+GNAK+ +FF KG RS EIA GDF
Sbjct: 668 VGNAKFAVFFPQKGPRSLGDEIAGGDF 694
>gb|AAC62125.1| hypothetical protein [Arabidopsis thaliana]
Length = 966
Score = 135 bits (341), Expect = 4e-30
Identities = 62/87 (71%), Positives = 72/87 (82%)
Frame = +1
Query: 4 ESFYIIGTADPTGLLDTNEVCVILDNGQLSGDVLVYRNPGLHFGDIHILKAVYVKELEDF 183
ES+YI+GT DPTG L NE+CVIL +GQ+SGDVLVYRNPGLHFGDIH+LKA YVK LED+
Sbjct: 582 ESYYIMGTVDPTGELKENEICVILHSGQISGDVLVYRNPGLHFGDIHVLKATYVKALEDY 641
Query: 184 IGNAKYGIFFSIKGQRSAAAEIANGDF 264
+GNAK+ +FF KG RS EIA GDF
Sbjct: 642 VGNAKFAVFFPQKGPRSLGDEIAGGDF 668
>gb|EXB59780.1| putative RNA-dependent RNA polymerase 3 [Morus notabilis]
Length = 521
Score = 134 bits (338), Expect = 1e-29
Identities = 60/87 (68%), Positives = 74/87 (85%)
Frame = +1
Query: 4 ESFYIIGTADPTGLLDTNEVCVILDNGQLSGDVLVYRNPGLHFGDIHILKAVYVKELEDF 183
+ FY++GTADPTG L+ +EVC++L NGQ+SG VLVYRNPGLHFGDIH+LKA Y++E+E F
Sbjct: 122 DCFYLMGTADPTGKLEHDEVCIVLANGQVSGKVLVYRNPGLHFGDIHVLKATYIEEMESF 181
Query: 184 IGNAKYGIFFSIKGQRSAAAEIANGDF 264
+GNAKY IFFS KG RS A E+A GDF
Sbjct: 182 VGNAKYAIFFSKKGPRSIADEMAGGDF 208
>ref|XP_006296898.1| hypothetical protein CARUB_v10012890mg [Capsella rubella]
gi|482565607|gb|EOA29796.1| hypothetical protein
CARUB_v10012890mg [Capsella rubella]
Length = 998
Score = 134 bits (338), Expect = 1e-29
Identities = 61/87 (70%), Positives = 72/87 (82%)
Frame = +1
Query: 4 ESFYIIGTADPTGLLDTNEVCVILDNGQLSGDVLVYRNPGLHFGDIHILKAVYVKELEDF 183
ES+Y++GT DPTG L NEVCVIL+ GQ+SG+VLVYRNPGLHFGDIH+LKA YVK LED+
Sbjct: 614 ESYYLMGTVDPTGELKENEVCVILETGQISGNVLVYRNPGLHFGDIHVLKATYVKALEDY 673
Query: 184 IGNAKYGIFFSIKGQRSAAAEIANGDF 264
+GN+KY +FF KG RS EIA GDF
Sbjct: 674 VGNSKYAVFFPQKGPRSLGDEIAGGDF 700
>ref|XP_006353487.1| PREDICTED: probable RNA-dependent RNA polymerase 3-like [Solanum
tuberosum]
Length = 1110
Score = 133 bits (334), Expect = 3e-29
Identities = 63/88 (71%), Positives = 75/88 (85%)
Frame = +1
Query: 1 SESFYIIGTADPTGLLDTNEVCVILDNGQLSGDVLVYRNPGLHFGDIHILKAVYVKELED 180
+++FY++GTADPT L+ +EVCVIL++GQ+ G+VLVYRNPGLHFGDIH L AV VK L D
Sbjct: 715 ADTFYLMGTADPTDTLNPHEVCVILEHGQIFGEVLVYRNPGLHFGDIHRLLAVPVKNLGD 774
Query: 181 FIGNAKYGIFFSIKGQRSAAAEIANGDF 264
+GNAKYGIFFS KG RSAA EIANGDF
Sbjct: 775 IVGNAKYGIFFSTKGPRSAATEIANGDF 802
>ref|XP_006408908.1| hypothetical protein EUTSA_v10001897mg [Eutrema salsugineum]
gi|557110064|gb|ESQ50361.1| hypothetical protein
EUTSA_v10001897mg [Eutrema salsugineum]
Length = 988
Score = 132 bits (333), Expect = 4e-29
Identities = 59/88 (67%), Positives = 74/88 (84%)
Frame = +1
Query: 1 SESFYIIGTADPTGLLDTNEVCVILDNGQLSGDVLVYRNPGLHFGDIHILKAVYVKELED 180
+ES+Y++GT DPTG L +EVCVIL++GQ+SGDVLVYRNPG+HFGDIH+LKA YVK LE+
Sbjct: 608 TESYYLMGTVDPTGELKEDEVCVILESGQISGDVLVYRNPGVHFGDIHVLKATYVKALEE 667
Query: 181 FIGNAKYGIFFSIKGQRSAAAEIANGDF 264
++GN+KY +FF KG RS EIA GDF
Sbjct: 668 YVGNSKYAVFFPQKGPRSLGDEIAGGDF 695
>ref|XP_004251631.1| PREDICTED: probable RNA-dependent RNA polymerase 3-like [Solanum
lycopersicum]
Length = 759
Score = 132 bits (333), Expect = 4e-29
Identities = 62/88 (70%), Positives = 75/88 (85%)
Frame = +1
Query: 1 SESFYIIGTADPTGLLDTNEVCVILDNGQLSGDVLVYRNPGLHFGDIHILKAVYVKELED 180
+++FY++GTADPT L+ +EVCVIL++GQ+ G+VL+YRNPGLHFGDIH L AV VK L D
Sbjct: 659 ADTFYLMGTADPTDTLNRHEVCVILEHGQIFGEVLIYRNPGLHFGDIHRLLAVPVKNLGD 718
Query: 181 FIGNAKYGIFFSIKGQRSAAAEIANGDF 264
+GNAKYGIFFS KG RSAA EIANGDF
Sbjct: 719 IVGNAKYGIFFSTKGPRSAATEIANGDF 746
>ref|XP_002883963.1| RNA-dependent RNA polymerase family protein [Arabidopsis lyrata
subsp. lyrata] gi|297329803|gb|EFH60222.1| RNA-dependent
RNA polymerase family protein [Arabidopsis lyrata subsp.
lyrata]
Length = 981
Score = 132 bits (333), Expect = 4e-29
Identities = 60/88 (68%), Positives = 74/88 (84%)
Frame = +1
Query: 1 SESFYIIGTADPTGLLDTNEVCVILDNGQLSGDVLVYRNPGLHFGDIHILKAVYVKELED 180
+ES+Y++GT DPTG L +EVCVIL++GQ+SG+VLVYRNPGLHFGDIHILKA YVK LE+
Sbjct: 600 TESYYLMGTVDPTGELKEDEVCVILESGQISGEVLVYRNPGLHFGDIHILKATYVKALEE 659
Query: 181 FIGNAKYGIFFSIKGQRSAAAEIANGDF 264
++GN+KY +FF KG RS EIA GDF
Sbjct: 660 YVGNSKYAVFFPQKGPRSLGDEIAGGDF 687
>ref|NP_179583.3| probable RNA-dependent RNA polymerase 5 [Arabidopsis thaliana]
gi|322967572|sp|O82188.2|RDR5_ARATH RecName:
Full=Probable RNA-dependent RNA polymerase 5;
Short=AtRDRP5; AltName: Full=RNA-directed RNA polymerase
5 gi|330251850|gb|AEC06944.1| probable RNA-dependent RNA
polymerase 5 [Arabidopsis thaliana]
Length = 977
Score = 132 bits (331), Expect = 6e-29
Identities = 59/88 (67%), Positives = 74/88 (84%)
Frame = +1
Query: 1 SESFYIIGTADPTGLLDTNEVCVILDNGQLSGDVLVYRNPGLHFGDIHILKAVYVKELED 180
+ES+Y++GT DPTG L +EVCVIL++GQ+SG+VLVYRNPGLHFGDIHILKA YVK LE+
Sbjct: 596 TESYYLMGTVDPTGALKEDEVCVILESGQISGEVLVYRNPGLHFGDIHILKATYVKALEE 655
Query: 181 FIGNAKYGIFFSIKGQRSAAAEIANGDF 264
++GN+K+ +FF KG RS EIA GDF
Sbjct: 656 YVGNSKFAVFFPQKGPRSLGDEIAGGDF 683
>gb|AAC62123.1| hypothetical protein [Arabidopsis thaliana]
Length = 929
Score = 132 bits (331), Expect = 6e-29
Identities = 59/88 (67%), Positives = 74/88 (84%)
Frame = +1
Query: 1 SESFYIIGTADPTGLLDTNEVCVILDNGQLSGDVLVYRNPGLHFGDIHILKAVYVKELED 180
+ES+Y++GT DPTG L +EVCVIL++GQ+SG+VLVYRNPGLHFGDIHILKA YVK LE+
Sbjct: 516 TESYYLMGTVDPTGALKEDEVCVILESGQISGEVLVYRNPGLHFGDIHILKATYVKALEE 575
Query: 181 FIGNAKYGIFFSIKGQRSAAAEIANGDF 264
++GN+K+ +FF KG RS EIA GDF
Sbjct: 576 YVGNSKFAVFFPQKGPRSLGDEIAGGDF 603
>gb|EMJ05474.1| hypothetical protein PRUPE_ppa001584mg [Prunus persica]
Length = 798
Score = 131 bits (330), Expect = 8e-29
Identities = 60/87 (68%), Positives = 74/87 (85%)
Frame = +1
Query: 4 ESFYIIGTADPTGLLDTNEVCVILDNGQLSGDVLVYRNPGLHFGDIHILKAVYVKELEDF 183
+S+ ++GTADPTG+L+ +EVC+ILD+GQ+SG VLVYR+PGLHFGDIH+LKA YVKELE
Sbjct: 416 QSYMLMGTADPTGILERDEVCIILDSGQMSGQVLVYRHPGLHFGDIHLLKARYVKELEYV 475
Query: 184 IGNAKYGIFFSIKGQRSAAAEIANGDF 264
+GNAKY IFFS KG RS A E+ GDF
Sbjct: 476 VGNAKYAIFFSCKGPRSVADEMGGGDF 502
>ref|XP_006451272.1| hypothetical protein CICLE_v10007331mg [Citrus clementina]
gi|568843311|ref|XP_006475557.1| PREDICTED: probable
RNA-dependent RNA polymerase 3-like isoform X2 [Citrus
sinensis] gi|557554498|gb|ESR64512.1| hypothetical
protein CICLE_v10007331mg [Citrus clementina]
Length = 1013
Score = 130 bits (328), Expect = 1e-28
Identities = 61/89 (68%), Positives = 74/89 (83%), Gaps = 1/89 (1%)
Frame = +1
Query: 1 SESFYIIGTADPTGLLDTNEVCVILDNGQLSGD-VLVYRNPGLHFGDIHILKAVYVKELE 177
+ES+Y++GT DPTG+L +NEVC+IL +GQ+S + VLVYRNPGLHFGDIH+LKA YVKELE
Sbjct: 629 TESYYLMGTVDPTGILKSNEVCIILKDGQVSWEKVLVYRNPGLHFGDIHVLKATYVKELE 688
Query: 178 DFIGNAKYGIFFSIKGQRSAAAEIANGDF 264
DF+G +KY IFF G RS A EIA GDF
Sbjct: 689 DFVGTSKYAIFFPCNGPRSLADEIAGGDF 717
>ref|XP_006451271.1| hypothetical protein CICLE_v10007331mg [Citrus clementina]
gi|568843309|ref|XP_006475556.1| PREDICTED: probable
RNA-dependent RNA polymerase 3-like isoform X1 [Citrus
sinensis] gi|557554497|gb|ESR64511.1| hypothetical
protein CICLE_v10007331mg [Citrus clementina]
Length = 1015
Score = 130 bits (328), Expect = 1e-28
Identities = 61/89 (68%), Positives = 74/89 (83%), Gaps = 1/89 (1%)
Frame = +1
Query: 1 SESFYIIGTADPTGLLDTNEVCVILDNGQLSGD-VLVYRNPGLHFGDIHILKAVYVKELE 177
+ES+Y++GT DPTG+L +NEVC+IL +GQ+S + VLVYRNPGLHFGDIH+LKA YVKELE
Sbjct: 631 TESYYLMGTVDPTGILKSNEVCIILKDGQVSWEKVLVYRNPGLHFGDIHVLKATYVKELE 690
Query: 178 DFIGNAKYGIFFSIKGQRSAAAEIANGDF 264
DF+G +KY IFF G RS A EIA GDF
Sbjct: 691 DFVGTSKYAIFFPCNGPRSLADEIAGGDF 719