BLASTX nr result

ID: Catharanthus22_contig00040451 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Catharanthus22_contig00040451
         (364 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABA98049.1| retrotransposon protein, putative, Ty1-copia subc...    76   5e-12
gb|AAX96193.1| retrotransposon protein, putative, Ty1-copia sub-...    76   5e-12
gb|ABA98286.2| retrotransposon protein, putative, Ty1-copia subc...    76   5e-12
gb|AAP94600.1| putative copia-like retrotransposon Hopscotch pol...    73   3e-11
gb|AAL66754.1|AF464738_5 putative copia-like retrotransposon Hop...    73   3e-11
emb|CAN71108.1| hypothetical protein VITISV_001478 [Vitis vinifera]    73   4e-11
gb|ABA94335.1| retrotransposon protein, putative, Ty1-copia subc...    71   1e-10
gb|AAN06870.1| Putative gag-pol polyprotein [Oryza sativa Japoni...    71   1e-10
emb|CAN79182.1| hypothetical protein VITISV_024133 [Vitis vinifera]    70   2e-10
gb|AAF02855.1|AC009324_4 Similar to retrotransposon proteins [Ar...    69   5e-10
dbj|BAM44535.1| polyprotein [Arabidopsis thaliana]                     69   5e-10
emb|CAN62863.1| hypothetical protein VITISV_030334 [Vitis vinifera]    69   5e-10
dbj|BAM44534.1| polyprotein [Arabidopsis thaliana]                     69   6e-10
gb|AAU43956.1| unknown protein [Oryza sativa Japonica Group] gi|...    69   6e-10
pir||T02087 gag/pol polyprotein - maize retrotransposon Hopscotc...    69   8e-10
gb|ABA97008.1| retrotransposon protein, putative, Ty1-copia subc...    68   1e-09
gb|AAT85031.1| putative polyprotein [Oryza sativa Japonica Group...    68   1e-09
gb|AAT69582.1| putative polyprotein [Oryza sativa Japonica Group...    68   1e-09
emb|CAN68480.1| hypothetical protein VITISV_007280 [Vitis vinifera]    67   2e-09
gb|AAK02020.2|AC074283_1 Putative gag-pol polyprotein [Oryza sat...    67   3e-09

>gb|ABA98049.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1460

 Score = 75.9 bits (185), Expect = 5e-12
 Identities = 48/121 (39%), Positives = 69/121 (57%), Gaps = 12/121 (9%)
 Frame = +1

Query: 4    KYQTWTLVPVSPNMNIVGCRWVVEL----NGTKLA*FPRPIINKRVST--------ILRR 147
            K +TW LVP     NI+GC+WV ++    +GT L  +   ++ K                
Sbjct: 970  KNKTWHLVPPQRGRNIIGCKWVYKIKRKADGT-LDRYKARLVAKGFKQRYGIDYEDTFSP 1028

Query: 148  SVPSSTSHHCLILALSVSRNWPLKQLEVQNAFLNCILLEDVFML*PPEFTDSLKPGYVCK 327
             V ++T    +IL+L+VS+ W L+QL+VQNAFL+  L E+V+ML PP F D  KP +VCK
Sbjct: 1029 VVKAATIR--IILSLAVSKGWSLRQLDVQNAFLHGYLEEEVYMLQPPGFEDPTKPHHVCK 1086

Query: 328  L 330
            L
Sbjct: 1087 L 1087


>gb|AAX96193.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
            Japonica Group]
          Length = 1621

 Score = 75.9 bits (185), Expect = 5e-12
 Identities = 48/121 (39%), Positives = 69/121 (57%), Gaps = 12/121 (9%)
 Frame = +1

Query: 4    KYQTWTLVPVSPNMNIVGCRWVVEL----NGTKLA*FPRPIINKRVST--------ILRR 147
            K +TW LVP     NI+GC+WV ++    +GT L  +   ++ K                
Sbjct: 692  KNKTWHLVPPQRGRNIIGCKWVYKIKRKADGT-LDRYKARLVAKGFKQRYGIDYEDTFSP 750

Query: 148  SVPSSTSHHCLILALSVSRNWPLKQLEVQNAFLNCILLEDVFML*PPEFTDSLKPGYVCK 327
             V ++T    +IL+L+VS+ W L+QL+VQNAFL+  L E+V+ML PP F D  KP +VCK
Sbjct: 751  VVKAATIR--IILSLAVSKGWSLRQLDVQNAFLHGYLEEEVYMLQPPGFEDPTKPHHVCK 808

Query: 328  L 330
            L
Sbjct: 809  L 809


>gb|ABA98286.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1478

 Score = 75.9 bits (185), Expect = 5e-12
 Identities = 48/121 (39%), Positives = 69/121 (57%), Gaps = 12/121 (9%)
 Frame = +1

Query: 4    KYQTWTLVPVSPNMNIVGCRWVVEL----NGTKLA*FPRPIINKRVST--------ILRR 147
            K +TW LVP     NI+GC+WV ++    +GT L  +   ++ K                
Sbjct: 963  KNKTWHLVPPQRGRNIIGCKWVYKIKRKADGT-LDRYKARLVAKGFKQRYGIDYEDTFSP 1021

Query: 148  SVPSSTSHHCLILALSVSRNWPLKQLEVQNAFLNCILLEDVFML*PPEFTDSLKPGYVCK 327
             V ++T    +IL+L+VS+ W L+QL+VQNAFL+  L E+V+ML PP F D  KP +VCK
Sbjct: 1022 VVKAATIR--IILSLAVSKGWSLRQLDVQNAFLHGYLEEEVYMLQPPGFEDPTKPHHVCK 1079

Query: 328  L 330
            L
Sbjct: 1080 L 1080


>gb|AAP94600.1| putative copia-like retrotransposon Hopscotch polyprotein [Zea mays]
          Length = 969

 Score = 73.2 bits (178), Expect = 3e-11
 Identities = 45/118 (38%), Positives = 64/118 (54%), Gaps = 9/118 (7%)
 Frame = +1

Query: 4    KYQTWTLVPVSPNMNIVGCRWVVELNGT---KLA*FPRPIINKRVST---ILRRSVPSST 165
            K +TW LVP     N++GC+WV ++       L  +   ++ K       I      S  
Sbjct: 830  KNKTWHLVPPKKGRNVIGCKWVYKIKRKADGSLDRYKARLVAKGYKQQYGIDYDDTFSPV 889

Query: 166  SHHC---LILALSVSRNWPLKQLEVQNAFLNCILLEDVFML*PPEFTDSLKPGYVCKL 330
              H    +IL+++VSR W L QL+VQNAFL+ +L E+V+M  PP + DS K  YVCKL
Sbjct: 890  VKHATIRIILSIAVSRGWSLCQLDVQNAFLHGVLEEEVYMQQPPGYEDSTKLNYVCKL 947


>gb|AAL66754.1|AF464738_5 putative copia-like retrotransposon Hopscotch polyprotein [Zea mays]
          Length = 1313

 Score = 73.2 bits (178), Expect = 3e-11
 Identities = 45/118 (38%), Positives = 64/118 (54%), Gaps = 9/118 (7%)
 Frame = +1

Query: 4    KYQTWTLVPVSPNMNIVGCRWVVELNGT---KLA*FPRPIINKRVST---ILRRSVPSST 165
            K +TW LVP     N++GC+WV ++       L  +   ++ K       I      S  
Sbjct: 830  KNKTWHLVPPKKGRNVIGCKWVYKIKRKADGSLDRYKARLVAKGYKQQYGIDYDDTFSPV 889

Query: 166  SHHC---LILALSVSRNWPLKQLEVQNAFLNCILLEDVFML*PPEFTDSLKPGYVCKL 330
              H    +IL+++VSR W L QL+VQNAFL+ +L E+V+M  PP + DS K  YVCKL
Sbjct: 890  VKHATIRIILSIAVSRGWSLCQLDVQNAFLHGVLEEEVYMQQPPGYEDSTKLNYVCKL 947


>emb|CAN71108.1| hypothetical protein VITISV_001478 [Vitis vinifera]
          Length = 1354

 Score = 72.8 bits (177), Expect = 4e-11
 Identities = 44/118 (37%), Positives = 56/118 (47%), Gaps = 11/118 (9%)
 Frame = +1

Query: 13   TWTLVPVSPNMNIVGCRWVVELNGTKLA*FPRPIINKRVSTILRRSVPSSTSHHC----- 177
            TW LVP     N+VGC+W+  +         R           +R  P    H       
Sbjct: 874  TWELVPPEDITNLVGCKWIFRIKRNSDGSIDRYKARLVAKGFHQR--PGVDYHETFSPVV 931

Query: 178  ------LILALSVSRNWPLKQLEVQNAFLNCILLEDVFML*PPEFTDSLKPGYVCKLH 333
                  L+L+++VS  W L+QL+V NAFL   L E+VFM  PP F DS  P YVCKLH
Sbjct: 932  KPTTVRLVLSIAVSNGWSLRQLDVNNAFLQGRLSENVFMAQPPGFVDSDHPSYVCKLH 989


>gb|ABA94335.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 404

 Score = 71.2 bits (173), Expect = 1e-10
 Identities = 44/123 (35%), Positives = 68/123 (55%), Gaps = 16/123 (13%)
 Frame = +1

Query: 10  QTWTLVPVSPNMNIVGCRWVVEL----NGTKLA*FPRPIINK------------RVSTIL 141
           +TW LVP     NI+GC+WV E+    +GT L  +   ++ K              S ++
Sbjct: 136 KTWHLVPPCKGHNIIGCKWVYEIKRKSDGT-LDRYKARLVAKGFKQRYGIDYVDTFSPVV 194

Query: 142 RRSVPSSTSHHCLILALSVSRNWPLKQLEVQNAFLNCILLEDVFML*PPEFTDSLKPGYV 321
           + ++  +      IL+++VSR W  +QL+VQNAFL+  L E+V+M  PP + D  KP +V
Sbjct: 195 KAAIIRT------ILSIAVSRGWSFRQLDVQNAFLHGHLEEEVYMAQPPGYEDKRKPNHV 248

Query: 322 CKL 330
           CKL
Sbjct: 249 CKL 251


>gb|AAN06870.1| Putative gag-pol polyprotein [Oryza sativa Japonica Group]
            gi|108706314|gb|ABF94109.1| retrotransposon protein,
            putative, Ty1-copia subclass [Oryza sativa Japonica
            Group]
          Length = 1247

 Score = 71.2 bits (173), Expect = 1e-10
 Identities = 41/118 (34%), Positives = 64/118 (54%), Gaps = 11/118 (9%)
 Frame = +1

Query: 10   QTWTLVPVSPNMNIVGCRWVVELNGTKLA*FPRPIINKRVSTILRRS-----------VP 156
            +TW LVP     N++ C+WV ++   +     R           +R            V 
Sbjct: 766  KTWHLVPPQKGRNVIDCKWVYKIKRKQDGSLDRYKARLVAKGFKQRYGIDYEDTFSPVVK 825

Query: 157  SSTSHHCLILALSVSRNWPLKQLEVQNAFLNCILLEDVFML*PPEFTDSLKPGYVCKL 330
            ++T    +IL+++VS+ W ++QL+VQNAFL+ +L E+V+M  PP + DS  PGYVCKL
Sbjct: 826  AATIR--IILSIAVSKGWCMRQLDVQNAFLHGVLEEEVYMKQPPGYEDSSLPGYVCKL 881


>emb|CAN79182.1| hypothetical protein VITISV_024133 [Vitis vinifera]
          Length = 555

 Score = 70.5 bits (171), Expect = 2e-10
 Identities = 44/118 (37%), Positives = 55/118 (46%), Gaps = 11/118 (9%)
 Frame = +1

Query: 13  TWTLVPVSPNMNIVGCRWVVELNGTKLA*FPRPIINKRVSTILRRSVPSSTSHHC----- 177
           TW LVP     N VGC+W+  +         R   +       +R  P    H       
Sbjct: 287 TWELVPPKDITNQVGCKWIFCIKRNSYGSIDRYKAHLVAKGFHQR--PGVDYHETFSLVV 344

Query: 178 ------LILALSVSRNWPLKQLEVQNAFLNCILLEDVFML*PPEFTDSLKPGYVCKLH 333
                 L+L++ VS  W L+QL+V NAFL   L E+VFM  PP F DS  P YVCKLH
Sbjct: 345 KPTTVRLVLSIVVSNGWSLRQLDVNNAFLQGRLSENVFMAQPPSFVDSDHPSYVCKLH 402


>gb|AAF02855.1|AC009324_4 Similar to retrotransposon proteins [Arabidopsis thaliana]
          Length = 1522

 Score = 69.3 bits (168), Expect = 5e-10
 Identities = 45/120 (37%), Positives = 60/120 (50%), Gaps = 9/120 (7%)
 Frame = +1

Query: 1    KKYQTWTLVPVSPNMNIVGCRWVVE--------LNGTKLA*FPRPIINKRVSTILRRSVP 156
            K+ +TWTLVP SPNMN++G  WV          L+  K     +    +     L    P
Sbjct: 940  KETETWTLVPYSPNMNVLGSMWVFRTKLHADGSLDKLKARLVAKGFKQEEGIDYLETYSP 999

Query: 157  S-STSHHCLILALSVSRNWPLKQLEVQNAFLNCILLEDVFML*PPEFTDSLKPGYVCKLH 333
               T    LIL ++    W LKQ++V+NAFL+  L E V+M  P  F D  KP +VC LH
Sbjct: 1000 VVRTPTVRLILHVATVLKWELKQMDVKNAFLHGDLTETVYMRQPAGFVDKSKPDHVCLLH 1059


>dbj|BAM44535.1| polyprotein [Arabidopsis thaliana]
          Length = 1475

 Score = 69.3 bits (168), Expect = 5e-10
 Identities = 45/118 (38%), Positives = 64/118 (54%), Gaps = 12/118 (10%)
 Frame = +1

Query: 13   TWTLVPVSP-NMNIVGCRWVV--------ELNGTKLA*FPRPIINKRVSTILRRS---VP 156
            TW LVP  P ++ IVGCRW+          LN  K     +   N+R       +   V 
Sbjct: 986  TWDLVPPPPPSVTIVGCRWIFTKKFNSDGSLNRYKARLVAKGY-NQRPGLDYAETFSFVI 1044

Query: 157  SSTSHHCLILALSVSRNWPLKQLEVQNAFLNCILLEDVFML*PPEFTDSLKPGYVCKL 330
             STS   ++L ++V R+WP++QL+V NAFL   L ++V+M  PP F D  +P YVC+L
Sbjct: 1045 KSTSIR-IVLGVAVDRSWPIRQLDVNNAFLQGTLTDEVYMSQPPGFVDKERPDYVCRL 1101


>emb|CAN62863.1| hypothetical protein VITISV_030334 [Vitis vinifera]
          Length = 1442

 Score = 69.3 bits (168), Expect = 5e-10
 Identities = 41/119 (34%), Positives = 63/119 (52%), Gaps = 10/119 (8%)
 Frame = +1

Query: 4    KYQTWTLVPVSPNMNIVGCRWVVELNGT---KLA*FPRPIINK----RVSTILRRS---V 153
            K+ TW LVP  PN   VGC+WV  +       +  F   ++ K    R     + +   V
Sbjct: 891  KHGTWDLVPPLPNCTPVGCKWVFRVKRKADGSVDKFKTRLVAKDYTQRPGLDYKETFSPV 950

Query: 154  PSSTSHHCLILALSVSRNWPLKQLEVQNAFLNCILLEDVFML*PPEFTDSLKPGYVCKL 330
                +  C +L ++V   WPL+Q+++ NAFL+  L E V+M+ PP F D+ KP +VC+L
Sbjct: 951  VRPATIRC-VLTIAVMNGWPLRQMDINNAFLHGTLTETVYMMQPPGFKDTSKPDHVCRL 1008


>dbj|BAM44534.1| polyprotein [Arabidopsis thaliana]
          Length = 1475

 Score = 68.9 bits (167), Expect = 6e-10
 Identities = 45/118 (38%), Positives = 64/118 (54%), Gaps = 12/118 (10%)
 Frame = +1

Query: 13   TWTLVPVSP-NMNIVGCRWVV--------ELNGTKLA*FPRPIINKRVSTILRRS---VP 156
            TW LVP  P ++ IVGCRW+          LN  K     +   N+R       +   V 
Sbjct: 986  TWDLVPPPPPSVTIVGCRWIFTKKFNSDGSLNRYKARLVAKGY-NQRPGLDYAETFSFVI 1044

Query: 157  SSTSHHCLILALSVSRNWPLKQLEVQNAFLNCILLEDVFML*PPEFTDSLKPGYVCKL 330
             STS   ++L ++V R+WP++QL+V NAFL   L ++V+M  PP F D  +P YVC+L
Sbjct: 1045 KSTSIR-IVLGVAVDRSWPIRQLDVNNAFLQGTLTDEVYMSQPPGFVDKDRPDYVCRL 1101


>gb|AAU43956.1| unknown protein [Oryza sativa Japonica Group]
            gi|52353503|gb|AAU44069.1| putative polyprotein [Oryza
            sativa Japonica Group]
          Length = 1447

 Score = 68.9 bits (167), Expect = 6e-10
 Identities = 40/118 (33%), Positives = 62/118 (52%), Gaps = 11/118 (9%)
 Frame = +1

Query: 10   QTWTLVPVSPNMNIVGCRWVVELNGTKLA*FPRPIINKRVSTILRRS-----------VP 156
            +TW LVP     N++ C+WV ++   +     R           +R            V 
Sbjct: 966  KTWHLVPPKQGRNVIDCKWVYKIKRKQDGSLDRYKARLVAKGFKQRYGIDYEDTFSPVVK 1025

Query: 157  SSTSHHCLILALSVSRNWPLKQLEVQNAFLNCILLEDVFML*PPEFTDSLKPGYVCKL 330
            ++T    ++L+++VSR W ++QL+VQNAFL+  L E+V+M  PP + D   PGYVCKL
Sbjct: 1026 AATIR--IVLSIAVSRGWCMRQLDVQNAFLHGFLEEEVYMKQPPGYEDESFPGYVCKL 1081


>pir||T02087 gag/pol polyprotein - maize retrotransposon Hopscotch
            gi|531389|gb|AAA57005.1| copia-like retrotransposon
            Hopscotch polyprotein [Zea mays]
          Length = 1439

 Score = 68.6 bits (166), Expect = 8e-10
 Identities = 44/119 (36%), Positives = 60/119 (50%), Gaps = 9/119 (7%)
 Frame = +1

Query: 1    KKYQTWTLVPVSPNMNIVGCRWVVELNGTKLA*FPRPIIN------KRVSTILRRSVPSS 162
            +K  TWTLVP     N++ C+WV ++         R          K+   I      S 
Sbjct: 949  QKNNTWTLVPPDRTRNLIDCKWVFKVKYNADGSIDRLKARLVAKGFKQQYGIDYDDTFSP 1008

Query: 163  TSHHC---LILALSVSRNWPLKQLEVQNAFLNCILLEDVFML*PPEFTDSLKPGYVCKL 330
               H    L+L+L+VS+ W L+QL+VQNAFL+ IL E V+M  PP F D+  P Y C L
Sbjct: 1009 VVKHSTIRLVLSLAVSQKWSLRQLDVQNAFLHGILEETVYMKQPPGFADTTHPNYHCHL 1067


>gb|ABA97008.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1202

 Score = 67.8 bits (164), Expect = 1e-09
 Identities = 44/120 (36%), Positives = 63/120 (52%), Gaps = 11/120 (9%)
 Frame = +1

Query: 4    KYQTWTLVPVSPNMNIVGCRWVVELNGT---KLA*FPRPIINKRVST--------ILRRS 150
            K +TW LVP     NI+ C+WV ++       L  +   ++ K                 
Sbjct: 811  KNKTWHLVPSKKGQNIIDCKWVYKVKQKADGSLDRYKARLVAKGFKQRYGIDYEDTFSPV 870

Query: 151  VPSSTSHHCLILALSVSRNWPLKQLEVQNAFLNCILLEDVFML*PPEFTDSLKPGYVCKL 330
            V ++T     IL++++SR W L+QL+VQNAFL+ +L EDVFM  PP +    K GYVCKL
Sbjct: 871  VKAATIR--TILSIAISRGWTLRQLDVQNAFLHGVLEEDVFMRQPPGYEQ--KDGYVCKL 926


>gb|AAT85031.1| putative polyprotein [Oryza sativa Japonica Group]
            gi|108708884|gb|ABF96679.1| retrotransposon protein,
            putative, Ty1-copia subclass [Oryza sativa Japonica
            Group]
          Length = 1437

 Score = 67.8 bits (164), Expect = 1e-09
 Identities = 41/120 (34%), Positives = 62/120 (51%), Gaps = 11/120 (9%)
 Frame = +1

Query: 4    KYQTWTLVPVSPNMNIVGCRWVVELNGTKLA*FPRPIINKRVSTILRRS----------- 150
            K  TW LVP     N++ C+WV ++   +     R           +R            
Sbjct: 948  KNNTWHLVPPQQGRNVIDCKWVYKIKRKQDGSLDRYKARLVAKGFKQRYGIDYEDTFSPV 1007

Query: 151  VPSSTSHHCLILALSVSRNWPLKQLEVQNAFLNCILLEDVFML*PPEFTDSLKPGYVCKL 330
            V ++T    +IL+++VSR W L+QL+VQNAFL+ +L E+V+M  PP + +   P YVCKL
Sbjct: 1008 VKAATIR--IILSIAVSRGWCLRQLDVQNAFLHGVLEEEVYMKQPPGYENPSTPDYVCKL 1065


>gb|AAT69582.1| putative polyprotein [Oryza sativa Japonica Group]
            gi|52353546|gb|AAU44112.1| putative polyprotein [Oryza
            sativa Japonica Group]
          Length = 1256

 Score = 67.8 bits (164), Expect = 1e-09
 Identities = 42/118 (35%), Positives = 62/118 (52%), Gaps = 11/118 (9%)
 Frame = +1

Query: 10   QTWTLVPVSPNMNIVGCRWVVELNGTKLA*FPRPIINKRVSTILRRS-----------VP 156
            +TW LVP     NI+  +WV ++   +     R           +R            V 
Sbjct: 775  KTWHLVPPQKGRNIIDYKWVYKIKRKQDGSLDRYKARLVAKGFKQRYGIDYEDTFSPVVK 834

Query: 157  SSTSHHCLILALSVSRNWPLKQLEVQNAFLNCILLEDVFML*PPEFTDSLKPGYVCKL 330
            ++T    +IL+++VSR W L+QL+VQNAFL+ IL E+V+M  PP + D + P YVCKL
Sbjct: 835  AATIR--IILSIAVSRGWTLRQLDVQNAFLHGILEEEVYMKQPPGYEDKVHPDYVCKL 890


>emb|CAN68480.1| hypothetical protein VITISV_007280 [Vitis vinifera]
          Length = 619

 Score = 67.4 bits (163), Expect = 2e-09
 Identities = 41/116 (35%), Positives = 60/116 (51%), Gaps = 9/116 (7%)
 Frame = +1

Query: 13  TWTLVPVSPNMNIVGCRWVVELNGTK---LA*FPRPIINKR------VSTILRRSVPSST 165
           TW LV  +   N+VGC+WV  +       +  F   ++ K       V  +   S     
Sbjct: 168 TWELVSPTGITNLVGCKWVFRIKRNSDGSIDRFKACLVAKGFHQRPGVDYLETFSPVIKP 227

Query: 166 SHHCLILALSVSRNWPLKQLEVQNAFLNCILLEDVFML*PPEFTDSLKPGYVCKLH 333
           +   L+L+++VS  W L+QL+V NAFL   + E V+M  PP F D+ KP +VCKLH
Sbjct: 228 TTMILVLSIAVSNGWSLRQLDVNNAFLQGTISETVYMAQPPGFIDADKPTHVCKLH 283


>gb|AAK02020.2|AC074283_1 Putative gag-pol polyprotein [Oryza sativa]
           gi|31430072|gb|AAP52036.1| retrotransposon protein,
           putative, Ty1-copia subclass [Oryza sativa Japonica
           Group]
          Length = 1058

 Score = 66.6 bits (161), Expect = 3e-09
 Identities = 40/118 (33%), Positives = 63/118 (53%), Gaps = 11/118 (9%)
 Frame = +1

Query: 10  QTWTLVPVSPNMNIVGCRWVVELN---GTKLA*FPRPIINKRVST--------ILRRSVP 156
           +TW LVP    +NI+ C+WV ++       +  +   ++ K                 V 
Sbjct: 601 KTWHLVPPQKGVNIIDCKWVYKVKRKADESIDRYKARLVAKGFKQRYGIDYEDTFSPIVK 660

Query: 157 SSTSHHCLILALSVSRNWPLKQLEVQNAFLNCILLEDVFML*PPEFTDSLKPGYVCKL 330
           ++T    L+L+L+VS+ W L+QL+VQNAFL+  L EDV+M  PP + +   P Y+CKL
Sbjct: 661 AATIR--LVLSLAVSQGWSLRQLDVQNAFLHGFLEEDVYMRQPPGYEEPKAPQYLCKL 716


Top