BLASTX nr result
ID: Catharanthus22_contig00040159
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Catharanthus22_contig00040159
(353 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAB10337.1| reverse transcriptase like protein [Arabidopsis ... 63 7e-13
emb|CCA66009.1| hypothetical protein [Beta vulgaris subsp. vulga... 60 8e-11
gb|ABD28627.2| RNA-directed DNA polymerase (Reverse transcriptas... 57 3e-10
gb|AAC26674.1| putative non-LTR retroelement reverse transcripta... 53 5e-10
gb|ABO80459.1| RNA-directed DNA polymerase (Reverse transcriptas... 53 7e-10
emb|CCA65997.1| hypothetical protein [Beta vulgaris subsp. vulga... 60 1e-09
gb|ABD28505.2| RNA-directed DNA polymerase (Reverse transcriptas... 56 5e-09
emb|CAN74183.1| hypothetical protein VITISV_034261 [Vitis vinifera] 51 3e-08
gb|ABW81175.1| non-LTR retrotransposon transposase [Arabidopsis ... 59 3e-08
ref|XP_004289445.1| PREDICTED: putative ribonuclease H protein A... 62 1e-07
emb|CAN81442.1| hypothetical protein VITISV_011546 [Vitis vinifera] 48 1e-07
gb|AAF23831.1|AC007234_3 F1E22.12 [Arabidopsis thaliana] 60 2e-07
gb|AAD24601.1| putative non-LTR retroelement reverse transcripta... 45 3e-07
gb|EEE50824.1| hypothetical protein OsJ_31232 [Oryza sativa Japo... 47 9e-07
gb|AAM18736.1|AC092548_14 putative reverse transcriptase [Oryza ... 47 1e-06
gb|AAP53315.2| retrotransposon protein, putative, unclassified [... 47 1e-06
ref|XP_002454941.1| hypothetical protein SORBIDRAFT_03g001780 [S... 43 2e-06
ref|XP_006490008.1| PREDICTED: uncharacterized protein LOC102624... 57 2e-06
emb|CCA66036.1| hypothetical protein [Beta vulgaris subsp. vulga... 44 3e-06
gb|AAC63844.1| putative non-LTR retroelement reverse transcripta... 56 6e-06
>emb|CAB10337.1| reverse transcriptase like protein [Arabidopsis thaliana]
gi|7268307|emb|CAB78601.1| reverse transcriptase like
protein [Arabidopsis thaliana]
Length = 929
Score = 63.2 bits (152), Expect(2) = 7e-13
Identities = 29/54 (53%), Positives = 36/54 (66%)
Frame = +1
Query: 103 GIYLFVIWNGEVLKGFKLERGLRQWDLLSPYLFVLCMEALGHQIREAMDNGKWR 264
G + ++WNGE F ERGLRQ D +SPYLFVLC+E L HQI A+ G W+
Sbjct: 427 GPEMSLLWNGEKTDSFTPERGLRQGDPISPYLFVLCIERLCHQIETAVGRGDWK 480
Score = 35.8 bits (81), Expect(2) = 7e-13
Identities = 17/31 (54%), Positives = 20/31 (64%)
Frame = +2
Query: 2 LEKAYDRINWKFLEKVLTAVGLENHSMRIIM 94
LEKAYDRI W FL + L A GL ++ IM
Sbjct: 392 LEKAYDRIRWDFLAETLEAAGLSEGWIKRIM 422
>emb|CCA66009.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
Length = 1378
Score = 59.7 bits (143), Expect(2) = 8e-11
Identities = 26/51 (50%), Positives = 35/51 (68%)
Frame = +1
Query: 112 LFVIWNGEVLKGFKLERGLRQWDLLSPYLFVLCMEALGHQIREAMDNGKWR 264
L ++WNGE ++ RGLRQ D LSPYL+V+CME L H I + + NG W+
Sbjct: 621 LQILWNGEPMEKICPTRGLRQGDPLSPYLYVICMERLAHLIDQEVTNGNWK 671
Score = 32.3 bits (72), Expect(2) = 8e-11
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = +2
Query: 5 EKAYDRINWKFLEKVLTAVGLENHSMRIIMFPVES 109
EKAYDR+ W F+ + L + + H + I+M V S
Sbjct: 584 EKAYDRLRWTFIRESLMELRIPQHLVDIVMNCVSS 618
>gb|ABD28627.2| RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease H
[Medicago truncatula]
Length = 1296
Score = 57.0 bits (136), Expect(2) = 3e-10
Identities = 29/58 (50%), Positives = 36/58 (62%)
Frame = +1
Query: 88 HYVSCGIYLFVIWNGEVLKGFKLERGLRQWDLLSPYLFVLCMEALGHQIREAMDNGKW 261
H VS Y ++WNG + FK GLRQ D LSPYLF+LCME L I++A+ G W
Sbjct: 610 HCVSSANYS-LLWNGNKMPPFKPTHGLRQGDPLSPYLFILCMEKLSVAIQDAVLQGSW 666
Score = 33.1 bits (74), Expect(2) = 3e-10
Identities = 15/36 (41%), Positives = 21/36 (58%)
Frame = +2
Query: 2 LEKAYDRINWKFLEKVLTAVGLENHSMRIIMFPVES 109
LEKA+D +NW FL L G + +++IM V S
Sbjct: 579 LEKAFDNVNWDFLNSCLLDFGFPDIIVKLIMHCVSS 614
>gb|AAC26674.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 970
Score = 53.1 bits (126), Expect(2) = 5e-10
Identities = 27/62 (43%), Positives = 35/62 (56%), Gaps = 3/62 (4%)
Frame = +1
Query: 88 HYVSCGIY---LFVIWNGEVLKGFKLERGLRQWDLLSPYLFVLCMEALGHQIREAMDNGK 258
H + G+ + V+WNG F RGLRQ D LSPYLFVLC+E L H I ++
Sbjct: 317 HRIMAGVTDPSMSVLWNGGKTDSFVPARGLRQGDPLSPYLFVLCLERLCHLIEASVGTWD 376
Query: 259 WR 264
W+
Sbjct: 377 WK 378
Score = 36.2 bits (82), Expect(2) = 5e-10
Identities = 15/22 (68%), Positives = 17/22 (77%)
Frame = +2
Query: 2 LEKAYDRINWKFLEKVLTAVGL 67
LEKAYDRI W FL++ L A GL
Sbjct: 290 LEKAYDRIRWNFLQETLVATGL 311
>gb|ABO80459.1| RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease H
[Medicago truncatula]
Length = 869
Score = 53.1 bits (126), Expect(2) = 7e-10
Identities = 24/48 (50%), Positives = 30/48 (62%)
Frame = +1
Query: 118 VIWNGEVLKGFKLERGLRQWDLLSPYLFVLCMEALGHQIREAMDNGKW 261
V+WNG K GLRQ D LSPYLF++CME L I +A+ G+W
Sbjct: 179 VLWNGNKWPPIKPTHGLRQGDPLSPYLFIICMEKLSLAINKAVHEGEW 226
Score = 35.8 bits (81), Expect(2) = 7e-10
Identities = 15/37 (40%), Positives = 24/37 (64%)
Frame = +2
Query: 2 LEKAYDRINWKFLEKVLTAVGLENHSMRIIMFPVEST 112
LEKA+D +NW+FL L G + ++++IM V S+
Sbjct: 139 LEKAFDNVNWEFLRSCLQDFGFPDDTIKLIMHCVTSS 175
>emb|CCA65997.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
Length = 1363
Score = 59.7 bits (143), Expect(3) = 1e-09
Identities = 26/49 (53%), Positives = 34/49 (69%)
Frame = +1
Query: 118 VIWNGEVLKGFKLERGLRQWDLLSPYLFVLCMEALGHQIREAMDNGKWR 264
+IWNGEV + F RG+RQ D LSPY+FVLCME L I + + +G W+
Sbjct: 621 LIWNGEVTQSFSPSRGIRQGDPLSPYIFVLCMERLSMLISDRIRDGSWK 669
Score = 25.8 bits (55), Expect(3) = 1e-09
Identities = 11/36 (30%), Positives = 17/36 (47%)
Frame = +2
Query: 2 LEKAYDRINWKFLEKVLTAVGLENHSMRIIMFPVES 109
L KAYD + W F+ + L + +IM + S
Sbjct: 581 LSKAYDSLEWGFIRETLQGFNFPQSLIALIMDCISS 616
Score = 21.9 bits (45), Expect(3) = 1e-09
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = +2
Query: 296 ISHLFSVDDLFLSRKTS 346
+SH+F DD+FL + S
Sbjct: 679 VSHIFYADDVFLFGQAS 695
>gb|ABD28505.2| RNA-directed DNA polymerase (Reverse transcriptase);
Polynucleotidyl transferase, Ribonuclease H fold
[Medicago truncatula]
Length = 729
Score = 56.2 bits (134), Expect(2) = 5e-09
Identities = 27/66 (40%), Positives = 40/66 (60%)
Frame = +1
Query: 85 NHYVSCGIYLFVIWNGEVLKGFKLERGLRQWDLLSPYLFVLCMEALGHQIREAMDNGKWR 264
+H +S Y ++WNG+ + F RG+RQ D LSPYLFV+CME L H I + ++ W+
Sbjct: 37 HHCISTPSYK-IMWNGDKSESFYPSRGIRQGDPLSPYLFVICMERLSHIIADQVEADYWK 95
Query: 265 GS*TGK 282
G+
Sbjct: 96 PMRAGR 101
Score = 29.6 bits (65), Expect(2) = 5e-09
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +2
Query: 2 LEKAYDRINWKFLEKVLTAVGLENHSMRII 91
LEKAYD +NW F+E+ L + + II
Sbjct: 7 LEKAYDLLNWNFVEECLKECKFPSKLINII 36
>emb|CAN74183.1| hypothetical protein VITISV_034261 [Vitis vinifera]
Length = 1201
Score = 51.2 bits (121), Expect(2) = 3e-08
Identities = 38/82 (46%), Positives = 45/82 (54%), Gaps = 3/82 (3%)
Frame = +1
Query: 106 IYLFVIWNGEVLKGFKLERGLRQWDLLSPYLFVLCMEALGHQIREAMDNGKWRG-S*TGK 282
+ + V+ NG F RGLRQ D LSPYLFVL MEAL I A +NG RG TG+
Sbjct: 601 VRMAVLVNGTPTDFFSTFRGLRQGDPLSPYLFVLIMEALSSLISRAEENGFIRGFKATGR 660
Query: 283 RRELYFSS--LFCG*SISFQED 342
R E S LF ++ F ED
Sbjct: 661 RGEGVSVSHLLFADDTLLFCED 682
Score = 32.3 bits (72), Expect(2) = 3e-08
Identities = 12/21 (57%), Positives = 16/21 (76%)
Frame = +2
Query: 2 LEKAYDRINWKFLEKVLTAVG 64
+EKAYD +NW+FL VL +G
Sbjct: 565 IEKAYDHVNWRFLMSVLEKMG 585
>gb|ABW81175.1| non-LTR retrotransposon transposase [Arabidopsis cebennensis]
Length = 799
Score = 59.3 bits (142), Expect(2) = 3e-08
Identities = 28/49 (57%), Positives = 34/49 (69%)
Frame = +1
Query: 118 VIWNGEVLKGFKLERGLRQWDLLSPYLFVLCMEALGHQIREAMDNGKWR 264
V+WNGE + F RGLRQ D LSPYLFVLC+E L HQI A+ +W+
Sbjct: 72 VLWNGEKTESFIPSRGLRQGDPLSPYLFVLCLERLCHQIDLAVGTKEWK 120
Score = 24.3 bits (51), Expect(2) = 3e-08
Identities = 9/26 (34%), Positives = 16/26 (61%)
Frame = +2
Query: 269 VKLAKGGSSISHLFSVDDLFLSRKTS 346
+ +++GG +SH+ DDL L + S
Sbjct: 122 ISMSRGGPLLSHICFADDLILFAEAS 147
>ref|XP_004289445.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Fragaria
vesca subsp. vesca]
Length = 719
Score = 61.6 bits (148), Expect = 1e-07
Identities = 26/49 (53%), Positives = 34/49 (69%)
Frame = +1
Query: 118 VIWNGEVLKGFKLERGLRQWDLLSPYLFVLCMEALGHQIREAMDNGKWR 264
+ +NGE+ FK +RG+RQ D LSPY+FVLCME L H I +D G W+
Sbjct: 232 ICFNGELTSSFKAQRGIRQGDPLSPYIFVLCMEKLSHLINSVVDMGYWK 280
>emb|CAN81442.1| hypothetical protein VITISV_011546 [Vitis vinifera]
Length = 843
Score = 47.8 bits (112), Expect(2) = 1e-07
Identities = 27/54 (50%), Positives = 32/54 (59%)
Frame = +1
Query: 106 IYLFVIWNGEVLKGFKLERGLRQWDLLSPYLFVLCMEALGHQIREAMDNGKWRG 267
+ + V+ NG K F RGLRQ D LSPYLFVL MEA I +A + G RG
Sbjct: 251 VRMAVLVNGTPTKFFSTYRGLRQGDPLSPYLFVLIMEAFSSLISKAEEKGFIRG 304
Score = 33.5 bits (75), Expect(2) = 1e-07
Identities = 15/36 (41%), Positives = 21/36 (58%)
Frame = +2
Query: 2 LEKAYDRINWKFLEKVLTAVGLENHSMRIIMFPVES 109
+EKAYD +NWKFL VL +G I+F + +
Sbjct: 215 IEKAYDHVNWKFLLSVLEKMGFXPKWRSWILFCIST 250
>gb|AAF23831.1|AC007234_3 F1E22.12 [Arabidopsis thaliana]
Length = 1055
Score = 60.5 bits (145), Expect = 2e-07
Identities = 28/49 (57%), Positives = 35/49 (71%)
Frame = +1
Query: 118 VIWNGEVLKGFKLERGLRQWDLLSPYLFVLCMEALGHQIREAMDNGKWR 264
++WNGE FK RGLRQ DLLSPYLFVLCME L H I +++ +W+
Sbjct: 57 LLWNGEKTTPFKPLRGLRQGDLLSPYLFVLCMERLCHLIERSINAKQWK 105
>gb|AAD24601.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1319
Score = 45.1 bits (105), Expect(2) = 3e-07
Identities = 23/50 (46%), Positives = 33/50 (66%)
Frame = +1
Query: 118 VIWNGEVLKGFKLERGLRQWDLLSPYLFVLCMEALGHQIREAMDNGKWRG 267
V+ NG+ ERG+RQ D +SP+LFVLC EAL H +++A ++ K G
Sbjct: 569 VLINGQHFGHITPERGIRQGDPISPFLFVLCTEALIHILQQAENSKKVSG 618
Score = 34.7 bits (78), Expect(2) = 3e-07
Identities = 15/36 (41%), Positives = 23/36 (63%)
Frame = +2
Query: 2 LEKAYDRINWKFLEKVLTAVGLENHSMRIIMFPVES 109
+ KAYDR+ W FL+++L A+G + + IM V S
Sbjct: 529 MSKAYDRVEWSFLQEILVALGFNDKWISWIMGCVTS 564
>gb|EEE50824.1| hypothetical protein OsJ_31232 [Oryza sativa Japonica Group]
Length = 1594
Score = 47.4 bits (111), Expect(2) = 9e-07
Identities = 22/47 (46%), Positives = 29/47 (61%)
Frame = +1
Query: 127 NGEVLKGFKLERGLRQWDLLSPYLFVLCMEALGHQIREAMDNGKWRG 267
NGE+ + F ERGLRQ D LSPYLF+LC E + + + G+ G
Sbjct: 849 NGELSESFSPERGLRQGDPLSPYLFLLCAEGFSALLSKTEEEGRLHG 895
Score = 30.8 bits (68), Expect(2) = 9e-07
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +2
Query: 2 LEKAYDRINWKFLEKVLTAVGLENHSMRIIM 94
+ KAYDR+ W FL ++ +G + +IM
Sbjct: 806 MSKAYDRVEWSFLHDMMLKLGFHTDWVNLIM 836
>gb|AAM18736.1|AC092548_14 putative reverse transcriptase [Oryza sativa Japonica Group]
Length = 1509
Score = 47.4 bits (111), Expect(2) = 1e-06
Identities = 22/47 (46%), Positives = 29/47 (61%)
Frame = +1
Query: 127 NGEVLKGFKLERGLRQWDLLSPYLFVLCMEALGHQIREAMDNGKWRG 267
NGE+ + F ERGLRQ D LSPYLF+LC E + + + G+ G
Sbjct: 821 NGELSESFSPERGLRQGDPLSPYLFLLCAEGFSALLSKTEEEGRLHG 867
Score = 30.8 bits (68), Expect(2) = 1e-06
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +2
Query: 2 LEKAYDRINWKFLEKVLTAVGLENHSMRIIM 94
+ KAYDR+ W FL ++ +G + +IM
Sbjct: 778 MSKAYDRVEWSFLHDMMLKLGFHTDWVNLIM 808
>gb|AAP53315.2| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1505
Score = 47.4 bits (111), Expect(2) = 1e-06
Identities = 22/47 (46%), Positives = 29/47 (61%)
Frame = +1
Query: 127 NGEVLKGFKLERGLRQWDLLSPYLFVLCMEALGHQIREAMDNGKWRG 267
NGE+ + F ERGLRQ D LSPYLF+LC E + + + G+ G
Sbjct: 817 NGELSESFSPERGLRQGDPLSPYLFLLCAEGFSALLSKTEEEGRLHG 863
Score = 30.8 bits (68), Expect(2) = 1e-06
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +2
Query: 2 LEKAYDRINWKFLEKVLTAVGLENHSMRIIM 94
+ KAYDR+ W FL ++ +G + +IM
Sbjct: 774 MSKAYDRVEWSFLHDMMLKLGFHTDWVNLIM 804
>ref|XP_002454941.1| hypothetical protein SORBIDRAFT_03g001780 [Sorghum bicolor]
gi|241926916|gb|EES00061.1| hypothetical protein
SORBIDRAFT_03g001780 [Sorghum bicolor]
Length = 631
Score = 43.1 bits (100), Expect(2) = 2e-06
Identities = 19/37 (51%), Positives = 25/37 (67%)
Frame = +1
Query: 157 ERGLRQWDLLSPYLFVLCMEALGHQIREAMDNGKWRG 267
+RGLRQ D LSPYLF++C E L +++A GK G
Sbjct: 211 QRGLRQGDPLSPYLFIICAEGLSAMLQKAEQKGKIEG 247
Score = 34.3 bits (77), Expect(2) = 2e-06
Identities = 12/31 (38%), Positives = 21/31 (67%)
Frame = +2
Query: 2 LEKAYDRINWKFLEKVLTAVGLENHSMRIIM 94
+ KAYDR+ W FLE ++ +G + +++IM
Sbjct: 158 MSKAYDRVEWSFLENMMRKMGFDEKWVQLIM 188
>ref|XP_006490008.1| PREDICTED: uncharacterized protein LOC102624085 [Citrus sinensis]
Length = 1635
Score = 57.4 bits (137), Expect = 2e-06
Identities = 25/49 (51%), Positives = 33/49 (67%)
Frame = +1
Query: 118 VIWNGEVLKGFKLERGLRQWDLLSPYLFVLCMEALGHQIREAMDNGKWR 264
V+WNGE+ F RG+RQ D LSPY+FVLC+E L H I ++ G W+
Sbjct: 1113 VLWNGELSSEFCPGRGVRQGDPLSPYIFVLCIERLSHGISRSIQQGHWK 1161
>emb|CCA66036.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
Length = 1369
Score = 43.9 bits (102), Expect(2) = 3e-06
Identities = 24/56 (42%), Positives = 32/56 (57%)
Frame = +1
Query: 118 VIWNGEVLKGFKLERGLRQWDLLSPYLFVLCMEALGHQIREAMDNGKWRGS*TGKR 285
V+ NG+ + F RGLRQ D LSP+LFV+C E L +R+A + G G R
Sbjct: 626 VLVNGQPSRNFFPSRGLRQGDPLSPFLFVVCAEGLSTLLRDAEEKKVIHGVKIGHR 681
Score = 32.3 bits (72), Expect(2) = 3e-06
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +2
Query: 2 LEKAYDRINWKFLEKVLTAVGLENHSMRIIMFPVES 109
+ KAYDR+ W FLE ++ +G +++M V S
Sbjct: 586 MSKAYDRVEWCFLENMMLKLGFPTRYTKLVMNCVTS 621
>gb|AAC63844.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1231
Score = 55.8 bits (133), Expect = 6e-06
Identities = 26/49 (53%), Positives = 32/49 (65%)
Frame = +1
Query: 118 VIWNGEVLKGFKLERGLRQWDLLSPYLFVLCMEALGHQIREAMDNGKWR 264
V+WNGE F RGLRQ D LSPYLFVLC+E L H I ++ +W+
Sbjct: 480 VLWNGERTDSFVPARGLRQGDPLSPYLFVLCLERLCHLIEASVGKREWK 528