BLASTX nr result

ID: Catharanthus22_contig00039872 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Catharanthus22_contig00039872
         (260 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|BAI48085.1| centromere protein C [Nicotiana tomentosiformis]       63   4e-08
dbj|BAI48084.1| centromere protein C homologue [Nicotiana tabacum]     63   4e-08
ref|XP_006343106.1| PREDICTED: uncharacterized protein LOC102577...    62   6e-08
ref|XP_004235698.1| PREDICTED: uncharacterized protein LOC543949...    59   9e-07
gb|AAU04618.1| CENP-C [Solanum tuberosum]                              59   9e-07
emb|CBI36186.3| unnamed protein product [Vitis vinifera]               55   1e-05

>dbj|BAI48085.1| centromere protein C [Nicotiana tomentosiformis]
          Length = 714

 Score = 63.2 bits (152), Expect = 4e-08
 Identities = 32/61 (52%), Positives = 41/61 (67%)
 Frame = +1

Query: 76  MVSEPLMSDSIDPLRALSGISLFPRTIRASTDVLPSGTNDLDSVHDFMKSLTMNSPERVM 255
           M +E L SD +DPLR L G+SLFP+TIR  TDV      DL+SVH+FMKSL    P ++ 
Sbjct: 1   MANEALTSDPVDPLRGLVGLSLFPKTIRVCTDV-SVDPKDLESVHNFMKSLETKMPAKLF 59

Query: 256 D 258
           +
Sbjct: 60  E 60


>dbj|BAI48084.1| centromere protein C homologue [Nicotiana tabacum]
          Length = 714

 Score = 63.2 bits (152), Expect = 4e-08
 Identities = 32/61 (52%), Positives = 41/61 (67%)
 Frame = +1

Query: 76  MVSEPLMSDSIDPLRALSGISLFPRTIRASTDVLPSGTNDLDSVHDFMKSLTMNSPERVM 255
           M +E L SD +DPLR L G+SLFP+TIR  TDV      DL+SVH+FMKSL    P ++ 
Sbjct: 1   MANEALTSDPVDPLRGLVGLSLFPKTIRVCTDV-SVDPKDLESVHNFMKSLETKMPAKLF 59

Query: 256 D 258
           +
Sbjct: 60  E 60


>ref|XP_006343106.1| PREDICTED: uncharacterized protein LOC102577589 [Solanum tuberosum]
          Length = 709

 Score = 62.4 bits (150), Expect = 6e-08
 Identities = 30/57 (52%), Positives = 41/57 (71%), Gaps = 1/57 (1%)
 Frame = +1

Query: 76  MVSEPLMSDSIDPLRALSGISLFPRTIRASTDVLPS-GTNDLDSVHDFMKSLTMNSP 243
           MV+E L+SD +DPL +L+G+SL P T+R STD   S    DL+S+H+FMKS+   SP
Sbjct: 1   MVNEALISDPVDPLHSLAGLSLLPTTVRVSTDASVSVNPKDLESIHNFMKSMETKSP 57


>ref|XP_004235698.1| PREDICTED: uncharacterized protein LOC543949 [Solanum lycopersicum]
          Length = 709

 Score = 58.5 bits (140), Expect = 9e-07
 Identities = 28/57 (49%), Positives = 40/57 (70%), Gaps = 1/57 (1%)
 Frame = +1

Query: 76  MVSEPLMSDSIDPLRALSGISLFPRTIRASTDVLPS-GTNDLDSVHDFMKSLTMNSP 243
           MV+E L+SD +DPL +L+G+SL P T+R ST    S  + DL+S+H+FMKS+    P
Sbjct: 1   MVNEALISDPVDPLHSLAGLSLLPTTVRVSTGASVSVDSKDLESIHNFMKSMETKGP 57


>gb|AAU04618.1| CENP-C [Solanum tuberosum]
          Length = 384

 Score = 58.5 bits (140), Expect = 9e-07
 Identities = 28/57 (49%), Positives = 39/57 (68%), Gaps = 1/57 (1%)
 Frame = +1

Query: 76  MVSEPLMSDSIDPLRALSGISLFPRTIRASTDVLPS-GTNDLDSVHDFMKSLTMNSP 243
           MV+E L+SD +DPL +L+G+SL P T+R STD   S    DL+ +H+FMKS+    P
Sbjct: 1   MVNEALISDPVDPLHSLAGLSLLPTTVRVSTDASVSVNPKDLELIHNFMKSMETKGP 57


>emb|CBI36186.3| unnamed protein product [Vitis vinifera]
          Length = 899

 Score = 55.1 bits (131), Expect = 1e-05
 Identities = 26/62 (41%), Positives = 42/62 (67%), Gaps = 1/62 (1%)
 Frame = +1

Query: 76  MVSEPLMSDSIDPLRALSGISLFPRTIRASTDVL-PSGTNDLDSVHDFMKSLTMNSPERV 252
           M ++   SD  DPL    G+SLFPRT R S+ V  PSG +++DS+H ++KS+ + SP ++
Sbjct: 1   MANDRRSSDLADPLLGYFGLSLFPRTFRDSSTVSKPSGHDNIDSLHSYLKSMALRSPTKL 60

Query: 253 MD 258
           ++
Sbjct: 61  LE 62


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