BLASTX nr result
ID: Catharanthus22_contig00039561
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Catharanthus22_contig00039561
(434 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_006603252.1| PREDICTED: uncharacterized protein LOC102659... 43 3e-08
ref|XP_006603467.1| PREDICTED: uncharacterized protein LOC102665... 42 2e-07
ref|XP_006490008.1| PREDICTED: uncharacterized protein LOC102624... 47 3e-07
ref|XP_004305757.1| PREDICTED: putative ribonuclease H protein A... 40 3e-07
ref|XP_006493638.1| PREDICTED: putative ribonuclease H protein A... 46 4e-07
ref|XP_006493637.1| PREDICTED: putative ribonuclease H protein A... 44 1e-06
ref|XP_006591700.1| PREDICTED: uncharacterized protein LOC100787... 39 2e-06
gb|EOY04491.1| Non-LTR retroelement reverse transcriptase-like p... 39 3e-06
ref|XP_002531038.1| hypothetical protein RCOM_0755060 [Ricinus c... 39 3e-06
gb|AAC63844.1| putative non-LTR retroelement reverse transcripta... 43 3e-06
gb|EOY19540.1| Ribonuclease H protein, putative [Theobroma cacao] 45 5e-06
ref|XP_006584399.1| PREDICTED: putative ribonuclease H protein A... 50 6e-06
gb|EOX98014.1| Ribonuclease H protein [Theobroma cacao] 40 8e-06
ref|XP_006469117.1| PREDICTED: putative ribonuclease H protein A... 46 8e-06
ref|XP_004301145.1| PREDICTED: putative ribonuclease H protein A... 42 8e-06
ref|XP_006599881.1| PREDICTED: uncharacterized protein LOC102663... 40 8e-06
>ref|XP_006603252.1| PREDICTED: uncharacterized protein LOC102659409 [Glycine max]
Length = 134
Score = 42.7 bits (99), Expect(2) = 3e-08
Identities = 19/55 (34%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Frame = +3
Query: 228 LSSFDLPNMRGCLPTSALLFKKRIC-NSFICPICHDEEEMILHIMRDYLEARNIW 389
+S+F ++ LPT L K+++ S+ CP+C EEE + H+M +Y + R++W
Sbjct: 66 VSAFSWRLLKNRLPTRDNLIKRQVTLPSYSCPLCEHEEESVNHLMFNYSKTRSLW 120
Score = 40.8 bits (94), Expect(2) = 3e-08
Identities = 18/51 (35%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Frame = +2
Query: 86 KDHIRWKPSTKGNFVTRSAYDILR-GFDDLPNDPSWRRLWKFKGPSRTSLF 235
+D + WKP + G F T+SAY +L+ ++ D +++ +W+ K P R S F
Sbjct: 19 RDFLWWKPDSNGLFSTKSAYKVLQEAHNNASGDNAFKIMWRLKIPPRVSAF 69
>ref|XP_006603467.1| PREDICTED: uncharacterized protein LOC102665094 [Glycine max]
Length = 247
Score = 42.4 bits (98), Expect(2) = 2e-07
Identities = 20/55 (36%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Frame = +3
Query: 228 LSSFDLPNMRGCLPTSALLFKKRIC-NSFICPICHDEEEMILHIMRDYLEARNIW 389
+S+F + LPT L K+++ +S+ CP+C EEE I H+M +Y + R++W
Sbjct: 91 VSAFSWRFFKNRLPTRDNLRKRQVTMSSYSCPLCDHEEESIYHLMFNYEKTRSLW 145
Score = 38.5 bits (88), Expect(2) = 2e-07
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = +2
Query: 86 KDHIRWKPSTKGNFVTRSAYDILR-GFDDLPNDPSWRRLWKFKGPSRTSLF 235
+D + WKP T G F T+SAY +L+ D + +WK K P + S F
Sbjct: 44 RDFLCWKPDTNGIFSTKSAYKVLQESHHSDSEDNVLKSMWKLKIPPKVSAF 94
>ref|XP_006490008.1| PREDICTED: uncharacterized protein LOC102624085 [Citrus sinensis]
Length = 1635
Score = 47.0 bits (110), Expect(2) = 3e-07
Identities = 26/84 (30%), Positives = 41/84 (48%)
Frame = +2
Query: 2 DLNTLRGWLPNDVLMLLSTVSLAGAGDRKDHIRWKPSTKGNFVTRSAYDILRGFDDLPND 181
D +R LPN++L+ +++V A D W S+ GNF +SAY++L +
Sbjct: 1425 DGKRVRYLLPNNILLKIASVHPPTASHGADSFFWGASSNGNFSVKSAYELLDDPIGNGDH 1484
Query: 182 PSWRRLWKFKGPSRTSLFL*FAKH 253
W +W +KGP +FL H
Sbjct: 1485 SFWCLVWSWKGPHSIRVFLWLLLH 1508
Score = 33.1 bits (74), Expect(2) = 3e-07
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = +3
Query: 252 MRGCLPTSALLFKKRICNSFICPICHDEEEMILHIMRDYLEARNIW 389
+ G L T L ++ + +S C C E ILH +RD + AR +W
Sbjct: 1507 LHGRLKTKKELNRRHLIDSTQCDRCGGPVEDILHTLRDCVTARRVW 1552
>ref|XP_004305757.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Fragaria
vesca subsp. vesca]
Length = 395
Score = 40.4 bits (93), Expect(2) = 3e-07
Identities = 14/25 (56%), Positives = 19/25 (76%)
Frame = +3
Query: 315 CPICHDEEEMILHIMRDYLEARNIW 389
CPICH +E +LH++RDY A+ IW
Sbjct: 162 CPICHSADETLLHLLRDYPRAKIIW 186
Score = 39.3 bits (90), Expect(2) = 3e-07
Identities = 24/90 (26%), Positives = 39/90 (43%)
Frame = +2
Query: 2 DLNTLRGWLPNDVLMLLSTVSLAGAGDRKDHIRWKPSTKGNFVTRSAYDILRGFDDLPND 181
D+ L L +++ L+ V + D W ++ G F +SAY + D P +
Sbjct: 60 DVELLLSVLSREIVNLIVNVPTGFSESGDDTRIWCSTSNGQFSVKSAYSSIFYSSD-PMN 118
Query: 182 PSWRRLWKFKGPSRTSLFL*FAKHEGLPAN 271
P W+ +WK P + FL H+ L N
Sbjct: 119 PQWKAMWKLDLPPKLKTFLWTILHKKLLTN 148
>ref|XP_006493638.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus
sinensis]
Length = 360
Score = 45.8 bits (107), Expect(2) = 4e-07
Identities = 21/70 (30%), Positives = 34/70 (48%)
Frame = +2
Query: 29 PNDVLMLLSTVSLAGAGDRKDHIRWKPSTKGNFVTRSAYDILRGFDDLPNDPSWRRLWKF 208
P+ +L+ ++ D D++ W S +F T SAY L + + WR LW++
Sbjct: 232 PHHLLLKIAATKPPSVNDEDDYMYWAYSKSEDFTTNSAYRALSKMEVHNEESFWRILWQW 291
Query: 209 KGPSRTSLFL 238
+GP R FL
Sbjct: 292 RGPQRIKTFL 301
Score = 33.9 bits (76), Expect(2) = 4e-07
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = +3
Query: 264 LPTSALLFKKRICNSFICPICHDEEEMILHIMRDYLEARNIW 389
L T A LF++ I + C C E LH++RD A+++W
Sbjct: 309 LKTKAELFRRHIVDDMSCAKCGCVVENTLHVLRDCPSAKHVW 350
>ref|XP_006493637.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus
sinensis]
Length = 246
Score = 43.9 bits (102), Expect(2) = 1e-06
Identities = 20/70 (28%), Positives = 33/70 (47%)
Frame = +2
Query: 29 PNDVLMLLSTVSLAGAGDRKDHIRWKPSTKGNFVTRSAYDILRGFDDLPNDPSWRRLWKF 208
P+ +L+ ++ D D++ W S +F T SAY L + + WR LW++
Sbjct: 118 PHHLLLKIAATKPPSVNDEDDYMYWAYSKSEDFTTNSAYRALSKMEVHNEESFWRILWQW 177
Query: 209 KGPSRTSLFL 238
+GP FL
Sbjct: 178 RGPQHIKTFL 187
Score = 33.9 bits (76), Expect(2) = 1e-06
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = +3
Query: 264 LPTSALLFKKRICNSFICPICHDEEEMILHIMRDYLEARNIW 389
L T A LF++ I + C C E LH++RD A+++W
Sbjct: 195 LKTKAELFRRHIVDDMSCAKCGCVVENTLHVLRDCPSAKHVW 236
>ref|XP_006591700.1| PREDICTED: uncharacterized protein LOC100787933 [Glycine max]
Length = 206
Score = 38.9 bits (89), Expect(2) = 2e-06
Identities = 19/54 (35%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Frame = +3
Query: 231 SSFDLPNMRGCLPTSALLFKKRIC-NSFICPICHDEEEMILHIMRDYLEARNIW 389
S+F + LPT L ++++ S+ CP+C EEE I H+M +Y + R++W
Sbjct: 67 SAFSWRLFKNRLPTRDNLRRRQVTLPSYSCPLCDLEEESITHLMFNYSKTRSLW 120
Score = 38.1 bits (87), Expect(2) = 2e-06
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Frame = +2
Query: 86 KDHIRWKPSTKGNFVTRSAYDILR-GFDDLPNDPSWRRLWKFKGPSRTSLF 235
+D + WKP G + T+SAY +L+ D+ D + + +W K P R S F
Sbjct: 19 RDLLCWKPDPNGLYYTKSAYKVLQEAHDNANEDRALKIMWSLKIPPRASAF 69
>gb|EOY04491.1| Non-LTR retroelement reverse transcriptase-like protein [Theobroma
cacao]
Length = 393
Score = 38.5 bits (88), Expect(2) = 3e-06
Identities = 15/42 (35%), Positives = 27/42 (64%)
Frame = +3
Query: 264 LPTSALLFKKRICNSFICPICHDEEEMILHIMRDYLEARNIW 389
LPT+A L +++ +S C C++E E ++H + DY +R+ W
Sbjct: 303 LPTAAWLMLRKLGSSSTCSRCNNETENLIHALHDYPASRDTW 344
Score = 38.1 bits (87), Expect(2) = 3e-06
Identities = 23/88 (26%), Positives = 38/88 (43%)
Frame = +2
Query: 2 DLNTLRGWLPNDVLMLLSTVSLAGAGDRKDHIRWKPSTKGNFVTRSAYDILRGFDDLPND 181
DL++L LP +L L + + + KD W ++ G F +SAY+ +L
Sbjct: 218 DLDSLIDILPMQILQKLESYPIDPSSTEKDKCFWTLTSSGEFSVKSAYE-SESTTNLAEH 276
Query: 182 PSWRRLWKFKGPSRTSLFL*FAKHEGLP 265
R +W + +F+ HE LP
Sbjct: 277 NKLRLVWCLSSCKKVKMFIWCVLHESLP 304
>ref|XP_002531038.1| hypothetical protein RCOM_0755060 [Ricinus communis]
gi|223529391|gb|EEF31355.1| hypothetical protein
RCOM_0755060 [Ricinus communis]
Length = 216
Score = 38.5 bits (88), Expect(2) = 3e-06
Identities = 17/58 (29%), Positives = 27/58 (46%)
Frame = +2
Query: 89 DHIRWKPSTKGNFVTRSAYDILRGFDDLPNDPSWRRLWKFKGPSRTSLFL*FAKHEGL 262
D + W S G ++S Y+ +R ++ W ++WK+KGP L HE L
Sbjct: 47 DQVVWNHSANGIHSSKSVYERIRNVMSSSSNGIWEKIWKWKGPQGVRSTLWLTSHERL 104
Score = 38.1 bits (87), Expect(2) = 3e-06
Identities = 18/44 (40%), Positives = 27/44 (61%)
Frame = +3
Query: 264 LPTSALLFKKRICNSFICPICHDEEEMILHIMRDYLEARNIWEL 395
L TS+L K+ I S +CP C++ EE LH +RD ++W+L
Sbjct: 104 LVTSSLCVKRLILPSLVCPRCYEHEEDTLHAIRD-----SVWQL 142
>gb|AAC63844.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1231
Score = 43.1 bits (100), Expect(2) = 3e-06
Identities = 29/81 (35%), Positives = 40/81 (49%), Gaps = 2/81 (2%)
Frame = +2
Query: 2 DLNTLRGWLPNDVLMLLSTVSLAGAGDRKDHIRWKPSTKGNFVTRSAYDILRG-FDDLPN 178
+L L +LP V L +V + D I WK + G F RSAY +L+G D PN
Sbjct: 839 NLEILGLYLPETVKRRLLSVVVQVFLGNGDEISWKGTQDGAFTVRSAYSLLQGDVGDRPN 898
Query: 179 DPS-WRRLWKFKGPSRTSLFL 238
S + R+WK P R +F+
Sbjct: 899 MGSFFNRIWKLITPERVRVFI 919
Score = 33.1 bits (74), Expect(2) = 3e-06
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +3
Query: 288 KKRICNSFICPICHDEEEMILHIMRDYLEARNIW 389
++ + + IC +C+ EE ILH++RD IW
Sbjct: 935 RRHLSENAICSVCNGAEETILHVLRDCPAMEPIW 968
>gb|EOY19540.1| Ribonuclease H protein, putative [Theobroma cacao]
Length = 288
Score = 45.1 bits (105), Expect(2) = 5e-06
Identities = 19/88 (21%), Positives = 47/88 (53%)
Frame = +2
Query: 2 DLNTLRGWLPNDVLMLLSTVSLAGAGDRKDHIRWKPSTKGNFVTRSAYDILRGFDDLPND 181
+L +++ LP ++++++S + + +G+ D W S+ G F +S Y+ ++ D +
Sbjct: 90 NLESVKQLLPQNLILMISAMMIDPSGEEMDDSYWLHSSTGMFTIKSTYE-MQISDPIHQT 148
Query: 182 PSWRRLWKFKGPSRTSLFL*FAKHEGLP 265
W+++W ++ +F+ H+ LP
Sbjct: 149 ICWKKVWALNSSNKVRMFVWRVLHDSLP 176
Score = 30.8 bits (68), Expect(2) = 5e-06
Identities = 12/42 (28%), Positives = 22/42 (52%)
Frame = +3
Query: 264 LPTSALLFKKRICNSFICPICHDEEEMILHIMRDYLEARNIW 389
LPT++ L + + S +C C EE ++H++ D + W
Sbjct: 175 LPTASWLQNRGLVYSPVCLSCGYSEEQLIHVLHDCSRVKRTW 216
>ref|XP_006584399.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Glycine
max]
Length = 470
Score = 50.4 bits (119), Expect(2) = 6e-06
Identities = 24/92 (26%), Positives = 38/92 (41%)
Frame = +2
Query: 2 DLNTLRGWLPNDVLMLLSTVSLAGAGDRKDHIRWKPSTKGNFVTRSAYDILRGFDDLPND 181
D L +P D++ + + D W + G + S Y+ + GF +L
Sbjct: 76 DFELLSLLIPQDIIKCIKAIIPPRDNADDDRRLWTGNKLGEYFVASGYNQVNGFQNLSQS 135
Query: 182 PSWRRLWKFKGPSRTSLFL*FAKHEGLPANFC 277
W ++WK K P R +F+ HE L N C
Sbjct: 136 HIWNKIWKIKAPERIKVFIWQVTHERLLTNSC 167
Score = 25.0 bits (53), Expect(2) = 6e-06
Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = +3
Query: 315 CPICHDEEEMILHIMRDYLEARNIW-ELAGGSNV 413
C C EE ILH++RD A +W L SNV
Sbjct: 178 CHHCVILEENILHVLRDCPLANLVWLHLLDQSNV 211
>gb|EOX98014.1| Ribonuclease H protein [Theobroma cacao]
Length = 528
Score = 39.7 bits (91), Expect(2) = 8e-06
Identities = 29/93 (31%), Positives = 39/93 (41%), Gaps = 3/93 (3%)
Frame = +2
Query: 2 DLNTLRGWLPNDVLMLLSTVSLAGAGDRKDHIRWKPSTKGNFVTRSAYDILRGFDD-LPN 178
D + L LPN+V++ + + +D W S G F SAYD LR
Sbjct: 44 DYDKLSYCLPNEVVLQVVQIMPPTVTIAQDMPYWGKSASGQFTIASAYDYLRQLSSPTKA 103
Query: 179 DPS--WRRLWKFKGPSRTSLFL*FAKHEGLPAN 271
PS W+ WK++G R FL H L N
Sbjct: 104 RPSGIWQGAWKWQGSQRVRTFLFQCLHGRLLTN 136
Score = 35.4 bits (80), Expect(2) = 8e-06
Identities = 13/47 (27%), Positives = 27/47 (57%)
Frame = +3
Query: 252 MRGCLPTSALLFKKRICNSFICPICHDEEEMILHIMRDYLEARNIWE 392
+ G L T+ +++ +CP C E+E + H++RD + A ++W+
Sbjct: 129 LHGRLLTNRKRLHRQLTADSLCPQCRMEDETVTHVLRDCMVATSLWK 175
>ref|XP_006469117.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus
sinensis]
Length = 491
Score = 45.8 bits (107), Expect(2) = 8e-06
Identities = 24/79 (30%), Positives = 37/79 (46%)
Frame = +2
Query: 26 LPNDVLMLLSTVSLAGAGDRKDHIRWKPSTKGNFVTRSAYDILRGFDDLPNDPSWRRLWK 205
LPN +++ ++ V G D W S +G+F +SAY + + W WK
Sbjct: 222 LPNCIILRIAAVQPPMEGKGDDKFFWANSQRGDFSVKSAYMAITKNEIGIEHSRWNIAWK 281
Query: 206 FKGPSRTSLFL*FAKHEGL 262
+KGP R F+ A H+ L
Sbjct: 282 WKGPPRVQTFIWLALHDRL 300
Score = 29.3 bits (64), Expect(2) = 8e-06
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = +3
Query: 264 LPTSALLFKKRICNSFICPICHDEEEMILHIMRDYLEARNIW 389
L T A + ++ I + C C E LH++RD A+ +W
Sbjct: 300 LKTKAEIGRRHIHIDWTCDHCGVASETTLHVLRDCFMAKRLW 341
>ref|XP_004301145.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Fragaria
vesca subsp. vesca]
Length = 411
Score = 42.4 bits (98), Expect(2) = 8e-06
Identities = 24/87 (27%), Positives = 40/87 (45%), Gaps = 1/87 (1%)
Frame = +2
Query: 14 LRGWLPNDVLMLLSTVSLAGAGDRKDHIRWKPSTKGNFVTRSAYDILRGFDDL-PNDPSW 190
L+ LP+ V+M + +V D + W + G F +SAY+ FD ++P W
Sbjct: 19 LKSVLPDHVVMQIISVPSGFGVSGHDKLIWNATANGKFSVKSAYNSF--FDSAGVSNPLW 76
Query: 191 RRLWKFKGPSRTSLFL*FAKHEGLPAN 271
LWK P + F+ + H+ + N
Sbjct: 77 THLWKLNCPPKLKTFMWYVLHQKILTN 103
Score = 32.7 bits (73), Expect(2) = 8e-06
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = +3
Query: 315 CPICHDEEEMILHIMRDYLEARNIW 389
CPIC + +E +LH++RD ++ IW
Sbjct: 117 CPICKNADETLLHLLRDCPRSQAIW 141
>ref|XP_006599881.1| PREDICTED: uncharacterized protein LOC102663605 [Glycine max]
Length = 214
Score = 40.0 bits (92), Expect(2) = 8e-06
Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = +2
Query: 86 KDHIRWKPSTKGNFVTRSAYDILRG-FDDLPNDPSWRRLWKFKGPSRTSLF 235
+D + WKP G F TRSAY +L+G + D +WK K P + S F
Sbjct: 19 RDILWWKPDPNGLFSTRSAYKVLQGAHHSVSQDNVLNTMWKLKIPPKVSAF 69
Score = 35.0 bits (79), Expect(2) = 8e-06
Identities = 17/55 (30%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Frame = +3
Query: 228 LSSFDLPNMRGCLPTSALLFKKRICN-SFICPICHDEEEMILHIMRDYLEARNIW 389
+S+F ++ LP+ L K+++ S+ CP+C EEE I H++ + + R +W
Sbjct: 66 VSAFSWRLLKNRLPSRDNLRKRQVTMPSYSCPLCDHEEESINHLIFNCIMTRRLW 120