BLASTX nr result
ID: Catharanthus22_contig00039214
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Catharanthus22_contig00039214
(467 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_006494982.1| PREDICTED: uncharacterized protein LOC102624... 82 2e-21
gb|ABI96971.1| putative gag-pol polyprotein [Triticum monococcum... 81 1e-17
emb|CAE02465.2| OSJNBa0042D13.18 [Oryza sativa Japonica Group] 82 4e-17
gb|AAX96717.1| retrotransposon protein, putative, Ty3-gypsy sub-... 82 4e-17
gb|AAX95495.1| Retrotransposon gag protein, putative [Oryza sati... 82 4e-17
gb|AAK94516.1| gag-pol polyprotein [Hordeum vulgare] 79 4e-17
gb|AAK94517.1| gag-pol polyprotein [Hordeum vulgare] 79 4e-17
emb|CAN83237.1| hypothetical protein VITISV_029623 [Vitis vinifera] 79 4e-17
emb|CAN80356.1| hypothetical protein VITISV_003506 [Vitis vinifera] 79 4e-17
gb|ABE60891.1| putative polyprotein [Oryza sativa Japonica Group] 83 7e-17
ref|XP_004954917.1| PREDICTED: uncharacterized protein LOC101752... 83 8e-17
gb|ADP20180.1| mutant gag-pol polyprotein [Pisum sativum] 84 1e-16
gb|AAK51582.1|AC022352_18 Putative retroelement [Oryza sativa Ja... 80 2e-16
emb|CAE02303.2| OSJNBa0042F21.10 [Oryza sativa Japonica Group] 80 2e-16
gb|AAQ56338.1| putative gag-pol polyprotein [Oryza sativa Japoni... 80 2e-16
gb|AAM94350.1| gag-pol polyprotein [Zea mays] 80 2e-16
emb|CAE02877.1| OSJNBb0022F23.14 [Oryza sativa Japonica Group] 80 2e-16
gb|AAX96591.1| retrotransposon protein, putative, Ty3-gypsy sub-... 80 2e-16
ref|XP_004980495.1| PREDICTED: uncharacterized protein LOC101772... 82 2e-16
gb|AAX96647.1| retrotransposon protein, putative, Ty3-gypsy sub-... 80 2e-16
>ref|XP_006494982.1| PREDICTED: uncharacterized protein LOC102624489 [Citrus sinensis]
Length = 1083
Score = 75.9 bits (185), Expect(2) = 2e-21
Identities = 34/46 (73%), Positives = 38/46 (82%)
Frame = -2
Query: 304 EGD*WKTTFTIDFGLYEWLVMPFGLTNAPSTFMRLMHHVLRNFIGK 167
EGD WKT F + LYEWL+MPFGL+NAP TFMRLM+HVLR FIGK
Sbjct: 739 EGDEWKTAFKTKYRLYEWLMMPFGLSNAPITFMRLMNHVLRAFIGK 784
Score = 52.0 bits (123), Expect(2) = 2e-21
Identities = 22/29 (75%), Positives = 28/29 (96%)
Frame = -3
Query: 384 NLLDELHGSQIFSKIDLKSGYHQIRMKKG 298
++LDELHGS +FSKIDLKSGYHQIR+++G
Sbjct: 712 DMLDELHGSCVFSKIDLKSGYHQIRIREG 740
Score = 82.0 bits (201), Expect = 7e-14
Identities = 54/115 (46%), Positives = 68/115 (59%), Gaps = 6/115 (5%)
Frame = -3
Query: 384 NLLDELHGSQIFSKIDLKSGYHQIRMKKGISGKQLSQ*I------LVYMNG*SCXXXXXX 223
++LDELHGS +FSKIDLKSGYHQIR+++G K + LV G S
Sbjct: 493 DMLDELHGSCVFSKIDLKSGYHQIRIREGDEWKTAFKTKYGLYEWLVMPFGLSNAPSTFM 552
Query: 222 XXXHS*DSCIMF*EISLVKFVVVYFDDILIYSKTYEDHLHHLKQFLFVLRSEKIY 58
+ D F + KFVVVYFDDILIYSK ++H+ HL+ L VLR EK+Y
Sbjct: 553 RLMN--DVLRAF----ISKFVVVYFDDILIYSKGLDEHIEHLQTILTVLRKEKLY 601
>gb|ABI96971.1| putative gag-pol polyprotein [Triticum monococcum subsp.
aegilopoides]
Length = 1704
Score = 80.9 bits (198), Expect(2) = 1e-17
Identities = 37/45 (82%), Positives = 39/45 (86%)
Frame = -2
Query: 301 GD*WKTTFTIDFGLYEWLVMPFGLTNAPSTFMRLMHHVLRNFIGK 167
GD WKTTF FGLYEWLVMPFGLTNAPSTFMRLM+ VLR FIG+
Sbjct: 865 GDEWKTTFKTKFGLYEWLVMPFGLTNAPSTFMRLMNEVLRAFIGR 909
Score = 34.3 bits (77), Expect(2) = 1e-17
Identities = 12/24 (50%), Positives = 18/24 (75%)
Frame = -1
Query: 74 EVRKYTNIGKCEFCLEKVTFLAYV 3
+ R + N+GKC FC ++V+FL YV
Sbjct: 941 DARLFGNLGKCTFCTDRVSFLGYV 964
Score = 72.8 bits (177), Expect = 4e-11
Identities = 44/109 (40%), Positives = 57/109 (52%)
Frame = -3
Query: 384 NLLDELHGSQIFSKIDLKSGYHQIRMKKGISGKQLSQ*ILVYMNG*SCXXXXXXXXXHS* 205
++LDEL GS IFSK+DL+SGYHQIRMK G K +
Sbjct: 837 DMLDELSGSTIFSKVDLRSGYHQIRMKLGDEWKTTFKTKFGLYEWLVMPFGLTNAPSTFM 896
Query: 204 DSCIMF*EISLVKFVVVYFDDILIYSKTYEDHLHHLKQFLFVLRSEKIY 58
+ +FVVVYFDDILIYSK+ E+HL HL+ LR +++
Sbjct: 897 RLMNEVLRAFIGRFVVVYFDDILIYSKSLEEHLEHLRAVFIALRDARLF 945
>emb|CAE02465.2| OSJNBa0042D13.18 [Oryza sativa Japonica Group]
Length = 2241
Score = 82.0 bits (201), Expect(2) = 4e-17
Identities = 38/45 (84%), Positives = 39/45 (86%)
Frame = -2
Query: 301 GD*WKTTFTIDFGLYEWLVMPFGLTNAPSTFMRLMHHVLRNFIGK 167
GD WKTTF FGLYEWLVMPFGLTNAPSTFMRLM+ VLR FIGK
Sbjct: 915 GDEWKTTFKTKFGLYEWLVMPFGLTNAPSTFMRLMNEVLRPFIGK 959
Score = 31.2 bits (69), Expect(2) = 4e-17
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = -1
Query: 74 EVRKYTNIGKCEFCLEKVTFLAYV 3
+ R + N+ KC FC ++V+FL YV
Sbjct: 991 DARLFGNLKKCTFCTDRVSFLGYV 1014
Score = 67.0 bits (162), Expect = 2e-09
Identities = 42/109 (38%), Positives = 56/109 (51%)
Frame = -3
Query: 384 NLLDELHGSQIFSKIDLKSGYHQIRMKKGISGKQLSQ*ILVYMNG*SCXXXXXXXXXHS* 205
++LDEL GS +FSK+DL+SGYHQIRMK G K +
Sbjct: 887 DMLDELSGSIVFSKVDLRSGYHQIRMKLGDEWKTTFKTKFGLYEWLVMPFGLTNAPSTFM 946
Query: 204 DSCIMF*EISLVKFVVVYFDDILIYSKTYEDHLHHLKQFLFVLRSEKIY 58
+ KFVVVYFDDILIYSK+ +H +HL+ LR +++
Sbjct: 947 RLMNEVLRPFIGKFVVVYFDDILIYSKSMGEHFNHLRAVFNALRDARLF 995
>gb|AAX96717.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza sativa
Japonica Group] gi|108864301|gb|ABA93040.2|
retrotransposon protein, putative, Ty3-gypsy subclass
[Oryza sativa Japonica Group]
Length = 1748
Score = 82.0 bits (201), Expect(2) = 4e-17
Identities = 38/45 (84%), Positives = 39/45 (86%)
Frame = -2
Query: 301 GD*WKTTFTIDFGLYEWLVMPFGLTNAPSTFMRLMHHVLRNFIGK 167
GD WKTTF FGLYEWLVMPFGLTNAPSTFMRLM+ VLR FIGK
Sbjct: 1163 GDEWKTTFKTKFGLYEWLVMPFGLTNAPSTFMRLMNEVLRPFIGK 1207
Score = 31.2 bits (69), Expect(2) = 4e-17
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = -1
Query: 74 EVRKYTNIGKCEFCLEKVTFLAYV 3
+ R + N+ KC FC ++V+FL YV
Sbjct: 1239 DARLFGNLEKCTFCTDRVSFLGYV 1262
Score = 67.0 bits (162), Expect = 2e-09
Identities = 42/109 (38%), Positives = 56/109 (51%)
Frame = -3
Query: 384 NLLDELHGSQIFSKIDLKSGYHQIRMKKGISGKQLSQ*ILVYMNG*SCXXXXXXXXXHS* 205
++LDEL GS +FSK+DL+SGYHQIRMK G K +
Sbjct: 1135 DMLDELSGSIVFSKVDLRSGYHQIRMKLGDEWKTTFKTKFGLYEWLVMPFGLTNAPSTFM 1194
Query: 204 DSCIMF*EISLVKFVVVYFDDILIYSKTYEDHLHHLKQFLFVLRSEKIY 58
+ KFVVVYFDDILIYSK+ +H +HL+ LR +++
Sbjct: 1195 RLMNEVLRPFIGKFVVVYFDDILIYSKSMGEHFNHLRAVFNALRDARLF 1243
>gb|AAX95495.1| Retrotransposon gag protein, putative [Oryza sativa Japonica Group]
Length = 1739
Score = 82.0 bits (201), Expect(2) = 4e-17
Identities = 38/45 (84%), Positives = 39/45 (86%)
Frame = -2
Query: 301 GD*WKTTFTIDFGLYEWLVMPFGLTNAPSTFMRLMHHVLRNFIGK 167
GD WKTTF FGLYEWLVMPFGLTNAPSTFMRLM+ VLR FIGK
Sbjct: 1154 GDEWKTTFKTKFGLYEWLVMPFGLTNAPSTFMRLMNEVLRPFIGK 1198
Score = 31.2 bits (69), Expect(2) = 4e-17
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = -1
Query: 74 EVRKYTNIGKCEFCLEKVTFLAYV 3
+ R + N+ KC FC ++V+FL YV
Sbjct: 1230 DARLFGNLEKCTFCTDRVSFLGYV 1253
Score = 67.0 bits (162), Expect = 2e-09
Identities = 42/109 (38%), Positives = 56/109 (51%)
Frame = -3
Query: 384 NLLDELHGSQIFSKIDLKSGYHQIRMKKGISGKQLSQ*ILVYMNG*SCXXXXXXXXXHS* 205
++LDEL GS +FSK+DL+SGYHQIRMK G K +
Sbjct: 1126 DMLDELSGSIVFSKVDLRSGYHQIRMKLGDEWKTTFKTKFGLYEWLVMPFGLTNAPSTFM 1185
Query: 204 DSCIMF*EISLVKFVVVYFDDILIYSKTYEDHLHHLKQFLFVLRSEKIY 58
+ KFVVVYFDDILIYSK+ +H +HL+ LR +++
Sbjct: 1186 RLMNEVLRPFIGKFVVVYFDDILIYSKSMGEHFNHLRAVFNALRDARLF 1234
>gb|AAK94516.1| gag-pol polyprotein [Hordeum vulgare]
Length = 1720
Score = 79.0 bits (193), Expect(2) = 4e-17
Identities = 36/45 (80%), Positives = 38/45 (84%)
Frame = -2
Query: 301 GD*WKTTFTIDFGLYEWLVMPFGLTNAPSTFMRLMHHVLRNFIGK 167
GD WKT F FGLYEWLVMPFGLTNAPSTFMRLM+ VLR FIG+
Sbjct: 880 GDEWKTAFKTKFGLYEWLVMPFGLTNAPSTFMRLMNEVLRAFIGR 924
Score = 34.3 bits (77), Expect(2) = 4e-17
Identities = 12/24 (50%), Positives = 18/24 (75%)
Frame = -1
Query: 74 EVRKYTNIGKCEFCLEKVTFLAYV 3
+ R + N+GKC FC ++V+FL YV
Sbjct: 956 DARLFGNLGKCTFCTDRVSFLGYV 979
Score = 71.2 bits (173), Expect = 1e-10
Identities = 44/109 (40%), Positives = 57/109 (52%)
Frame = -3
Query: 384 NLLDELHGSQIFSKIDLKSGYHQIRMKKGISGKQLSQ*ILVYMNG*SCXXXXXXXXXHS* 205
++LDEL GS IFSK+DL+SGYHQIRMK G K +
Sbjct: 852 DMLDELSGSIIFSKVDLRSGYHQIRMKLGDEWKTAFKTKFGLYEWLVMPFGLTNAPSTFM 911
Query: 204 DSCIMF*EISLVKFVVVYFDDILIYSKTYEDHLHHLKQFLFVLRSEKIY 58
+ +FVVVYFDDILIYS++ EDHL HL+ LR +++
Sbjct: 912 RLMNEVLRAFIGRFVVVYFDDILIYSRSLEDHLDHLRAVFTALRDARLF 960
>gb|AAK94517.1| gag-pol polyprotein [Hordeum vulgare]
Length = 1717
Score = 79.0 bits (193), Expect(2) = 4e-17
Identities = 36/45 (80%), Positives = 38/45 (84%)
Frame = -2
Query: 301 GD*WKTTFTIDFGLYEWLVMPFGLTNAPSTFMRLMHHVLRNFIGK 167
GD WKT F FGLYEWLVMPFGLTNAPSTFMRLM+ VLR FIG+
Sbjct: 877 GDEWKTAFKTKFGLYEWLVMPFGLTNAPSTFMRLMNEVLRAFIGR 921
Score = 34.3 bits (77), Expect(2) = 4e-17
Identities = 12/24 (50%), Positives = 18/24 (75%)
Frame = -1
Query: 74 EVRKYTNIGKCEFCLEKVTFLAYV 3
+ R + N+GKC FC ++V+FL YV
Sbjct: 953 DARLFGNLGKCTFCTDRVSFLGYV 976
Score = 71.2 bits (173), Expect = 1e-10
Identities = 44/109 (40%), Positives = 57/109 (52%)
Frame = -3
Query: 384 NLLDELHGSQIFSKIDLKSGYHQIRMKKGISGKQLSQ*ILVYMNG*SCXXXXXXXXXHS* 205
++LDEL GS IFSK+DL+SGYHQIRMK G K +
Sbjct: 849 DMLDELSGSIIFSKVDLRSGYHQIRMKLGDEWKTAFKTKFGLYEWLVMPFGLTNAPSTFM 908
Query: 204 DSCIMF*EISLVKFVVVYFDDILIYSKTYEDHLHHLKQFLFVLRSEKIY 58
+ +FVVVYFDDILIYS++ EDHL HL+ LR +++
Sbjct: 909 RLMNEVLRAFIGRFVVVYFDDILIYSRSLEDHLDHLRAVFTALRDARLF 957
>emb|CAN83237.1| hypothetical protein VITISV_029623 [Vitis vinifera]
Length = 1124
Score = 79.3 bits (194), Expect(2) = 4e-17
Identities = 50/116 (43%), Positives = 69/116 (59%), Gaps = 7/116 (6%)
Frame = -3
Query: 384 NLLDELHGSQIFSKIDLKSGYHQIRMKKGISGK-------QLSQ*ILVYMNG*SCXXXXX 226
++LDELHGS +F+KIDLKSGYHQIRMK+G K +L + +++ +
Sbjct: 467 DMLDELHGSCVFTKIDLKSGYHQIRMKEGDEWKTAFKTKYELYEWLVMPFGLTNTPSTFM 526
Query: 225 XXXXHS*DSCIMF*EISLVKFVVVYFDDILIYSKTYEDHLHHLKQFLFVLRSEKIY 58
H+ S I +FVVV FDDIL+YSK ++H++HL L VLR EK+Y
Sbjct: 527 RLMNHALRSFI-------GRFVVVCFDDILVYSKNIDEHINHLHYVLAVLRKEKLY 575
Score = 33.9 bits (76), Expect(2) = 4e-17
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = -1
Query: 62 YTNIGKCEFCLEKVTFLAYV 3
Y N+ KC FC++KV FL YV
Sbjct: 575 YANLKKCSFCMDKVVFLGYV 594
>emb|CAN80356.1| hypothetical protein VITISV_003506 [Vitis vinifera]
Length = 960
Score = 79.3 bits (194), Expect(2) = 4e-17
Identities = 36/47 (76%), Positives = 40/47 (85%)
Frame = -2
Query: 307 EEGD*WKTTFTIDFGLYEWLVMPFGLTNAPSTFMRLMHHVLRNFIGK 167
+EGD WKT F +GLYEWLVMPFGLTNA STFMRLM+HVLR FIG+
Sbjct: 299 KEGDEWKTAFKTKYGLYEWLVMPFGLTNALSTFMRLMNHVLRAFIGR 345
Score = 33.9 bits (76), Expect(2) = 4e-17
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = -1
Query: 62 YTNIGKCEFCLEKVTFLAYV 3
Y N+ KC FC++KV FL YV
Sbjct: 381 YANLKKCSFCMDKVVFLGYV 400
Score = 78.2 bits (191), Expect = 1e-12
Identities = 49/119 (41%), Positives = 67/119 (56%), Gaps = 10/119 (8%)
Frame = -3
Query: 384 NLLDELHGSQIFSKIDLKSGYHQIRMKKGISGKQ-------LSQ*ILV---YMNG*SCXX 235
++LDELHGS +F KIDLKSGYHQIRMK+G K L + +++ N S
Sbjct: 273 DMLDELHGSCVFIKIDLKSGYHQIRMKEGDEWKTAFKTKYGLYEWLVMPFGLTNALSTFM 332
Query: 234 XXXXXXXHS*DSCIMF*EISLVKFVVVYFDDILIYSKTYEDHLHHLKQFLFVLRSEKIY 58
+ + +FVVVYFDDIL+YSK ++H++HL L +LR EK+Y
Sbjct: 333 RLMNHVLRA----------FIGRFVVVYFDDILVYSKNLDEHINHLHCVLAILRKEKLY 381
>gb|ABE60891.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1713
Score = 83.2 bits (204), Expect(2) = 7e-17
Identities = 38/45 (84%), Positives = 39/45 (86%)
Frame = -2
Query: 301 GD*WKTTFTIDFGLYEWLVMPFGLTNAPSTFMRLMHHVLRNFIGK 167
GD WKT F FGLYEWLVMPFGLTNAPSTFMRLM+HVLR FIGK
Sbjct: 824 GDEWKTAFKTKFGLYEWLVMPFGLTNAPSTFMRLMNHVLRAFIGK 868
Score = 29.3 bits (64), Expect(2) = 7e-17
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = -1
Query: 62 YTNIGKCEFCLEKVTFLAYV 3
Y N+ KC FC ++V FL +V
Sbjct: 904 YANLEKCTFCTDQVVFLGFV 923
Score = 79.0 bits (193), Expect = 6e-13
Identities = 49/109 (44%), Positives = 61/109 (55%)
Frame = -3
Query: 384 NLLDELHGSQIFSKIDLKSGYHQIRMKKGISGKQLSQ*ILVYMNG*SCXXXXXXXXXHS* 205
++LDEL GS IFSKIDL+SG+HQIRMK G K +
Sbjct: 796 DMLDELSGSMIFSKIDLRSGFHQIRMKIGDEWKTAFKTKFGLYEWLVMPFGLTNAPSTFM 855
Query: 204 DSCIMF*EISLVKFVVVYFDDILIYSKTYEDHLHHLKQFLFVLRSEKIY 58
+ KFVVVYFDDILIYSKT E+H+ H++Q L VLR E++Y
Sbjct: 856 RLMNHVLRAFIGKFVVVYFDDILIYSKTLEEHVAHIQQVLDVLRKEQLY 904
>ref|XP_004954917.1| PREDICTED: uncharacterized protein LOC101752491 [Setaria italica]
Length = 1295
Score = 83.2 bits (204), Expect(2) = 8e-17
Identities = 38/45 (84%), Positives = 39/45 (86%)
Frame = -2
Query: 301 GD*WKTTFTIDFGLYEWLVMPFGLTNAPSTFMRLMHHVLRNFIGK 167
GD WKT F FGLYEWLVMPFGLTNAPSTFMRLM+HVLR FIGK
Sbjct: 890 GDEWKTAFKTKFGLYEWLVMPFGLTNAPSTFMRLMNHVLRAFIGK 934
Score = 29.3 bits (64), Expect(2) = 8e-17
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = -1
Query: 62 YTNIGKCEFCLEKVTFLAYV 3
Y NI KC FC + V FL +V
Sbjct: 970 YGNIAKCTFCTDHVVFLGFV 989
Score = 80.5 bits (197), Expect = 2e-13
Identities = 48/109 (44%), Positives = 62/109 (56%)
Frame = -3
Query: 384 NLLDELHGSQIFSKIDLKSGYHQIRMKKGISGKQLSQ*ILVYMNG*SCXXXXXXXXXHS* 205
++LDEL GS IF+KIDL+SGYHQIRMK G K +
Sbjct: 862 DMLDELSGSTIFTKIDLRSGYHQIRMKIGDEWKTAFKTKFGLYEWLVMPFGLTNAPSTFM 921
Query: 204 DSCIMF*EISLVKFVVVYFDDILIYSKTYEDHLHHLKQFLFVLRSEKIY 58
+ KFVVVYFDDILIYSK++++HL H++Q L VLR +K+Y
Sbjct: 922 RLMNHVLRAFIGKFVVVYFDDILIYSKSFDEHLDHIRQVLSVLRDDKLY 970
>gb|ADP20180.1| mutant gag-pol polyprotein [Pisum sativum]
Length = 1004
Score = 84.3 bits (207), Expect(2) = 1e-16
Identities = 37/46 (80%), Positives = 40/46 (86%)
Frame = -2
Query: 304 EGD*WKTTFTIDFGLYEWLVMPFGLTNAPSTFMRLMHHVLRNFIGK 167
EGD WKT F FGLYEW+VMPFGLTNAPSTFMRLM+HVLR F+GK
Sbjct: 710 EGDEWKTAFKTKFGLYEWMVMPFGLTNAPSTFMRLMNHVLREFLGK 755
Score = 27.3 bits (59), Expect(2) = 1e-16
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = -1
Query: 62 YTNIGKCEFCLEKVTFLAYV 3
Y N+ KC FC + V FL ++
Sbjct: 791 YANLEKCVFCTDHVIFLGFI 810
Score = 74.3 bits (181), Expect = 2e-11
Identities = 49/109 (44%), Positives = 58/109 (53%)
Frame = -3
Query: 384 NLLDELHGSQIFSKIDLKSGYHQIRMKKGISGKQLSQ*ILVYMNG*SCXXXXXXXXXHS* 205
+LLDEL G+ +FSKIDLKSGYHQIR+++G K +
Sbjct: 683 DLLDELFGACLFSKIDLKSGYHQIRIREGDEWKTAFKTKFGLYEWMVMPFGLTNAPSTFM 742
Query: 204 DSCIMF*EISLVKFVVVYFDDILIYSKTYEDHLHHLKQFLFVLRSEKIY 58
L KFVVVYFDDILIYSK +DH HLK L VLR E +Y
Sbjct: 743 RLMNHVLREFLGKFVVVYFDDILIYSKNLDDHCIHLKAVLQVLRYENLY 791
>gb|AAK51582.1|AC022352_18 Putative retroelement [Oryza sativa Japonica Group]
gi|31431012|gb|AAP52850.1| retrotransposon protein,
putative, Ty3-gypsy subclass [Oryza sativa Japonica
Group]
Length = 2447
Score = 80.1 bits (196), Expect(2) = 2e-16
Identities = 37/45 (82%), Positives = 38/45 (84%)
Frame = -2
Query: 301 GD*WKTTFTIDFGLYEWLVMPFGLTNAPSTFMRLMHHVLRNFIGK 167
GD WKT F FGLYEWLVMPFGLTNAPSTFMRLM+ VLR FIGK
Sbjct: 821 GDEWKTAFKTKFGLYEWLVMPFGLTNAPSTFMRLMNEVLRPFIGK 865
Score = 31.2 bits (69), Expect(2) = 2e-16
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = -1
Query: 74 EVRKYTNIGKCEFCLEKVTFLAYV 3
+ R + N+ KC FC ++V+FL YV
Sbjct: 897 DARLFGNLEKCTFCTDRVSFLGYV 920
Score = 48.9 bits (115), Expect(2) = 5e-11
Identities = 22/39 (56%), Positives = 29/39 (74%)
Frame = -3
Query: 174 LVKFVVVYFDDILIYSKTYEDHLHHLKQFLFVLRSEKIY 58
L KFVVV+ DDIL+YS++ EDH HHL+ L LR ++Y
Sbjct: 1655 LDKFVVVFIDDILVYSQSEEDHQHHLRLVLGKLREHQLY 1693
Score = 43.9 bits (102), Expect(2) = 5e-11
Identities = 19/34 (55%), Positives = 25/34 (73%)
Frame = -2
Query: 268 FGLYEWLVMPFGLTNAPSTFMRLMHHVLRNFIGK 167
+GLYE+ VM FGLTNAP+ FM LM+ V ++ K
Sbjct: 1624 YGLYEFTVMSFGLTNAPAFFMNLMNKVFMEYLDK 1657
Score = 67.0 bits (162), Expect = 2e-09
Identities = 42/109 (38%), Positives = 56/109 (51%)
Frame = -3
Query: 384 NLLDELHGSQIFSKIDLKSGYHQIRMKKGISGKQLSQ*ILVYMNG*SCXXXXXXXXXHS* 205
++LDEL GS +FSK+DL+SGYHQIRMK G K +
Sbjct: 793 DMLDELSGSIVFSKVDLRSGYHQIRMKLGDEWKTAFKTKFGLYEWLVMPFGLTNAPSTFM 852
Query: 204 DSCIMF*EISLVKFVVVYFDDILIYSKTYEDHLHHLKQFLFVLRSEKIY 58
+ KFVVVYFDDILIYSK+ +H +HL+ LR +++
Sbjct: 853 RLMNEVLRPFIGKFVVVYFDDILIYSKSMGEHFNHLRAVFNALRDARLF 901
>emb|CAE02303.2| OSJNBa0042F21.10 [Oryza sativa Japonica Group]
Length = 2388
Score = 80.1 bits (196), Expect(2) = 2e-16
Identities = 37/45 (82%), Positives = 38/45 (84%)
Frame = -2
Query: 301 GD*WKTTFTIDFGLYEWLVMPFGLTNAPSTFMRLMHHVLRNFIGK 167
GD WKT F FGLYEWLVMPFGLTNAPSTFMRLM+ VLR FIGK
Sbjct: 657 GDEWKTAFKTKFGLYEWLVMPFGLTNAPSTFMRLMNEVLRPFIGK 701
Score = 31.2 bits (69), Expect(2) = 2e-16
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = -1
Query: 74 EVRKYTNIGKCEFCLEKVTFLAYV 3
+ R + N+ KC FC ++V+FL YV
Sbjct: 733 DARLFGNLEKCTFCTDRVSFLGYV 756
Score = 65.5 bits (158), Expect = 7e-09
Identities = 42/109 (38%), Positives = 55/109 (50%)
Frame = -3
Query: 384 NLLDELHGSQIFSKIDLKSGYHQIRMKKGISGKQLSQ*ILVYMNG*SCXXXXXXXXXHS* 205
++LDEL GS +FSK DL+SGYHQIRMK G K +
Sbjct: 629 DMLDELSGSIVFSKADLRSGYHQIRMKLGDEWKTAFKTKFGLYEWLVMPFGLTNAPSTFM 688
Query: 204 DSCIMF*EISLVKFVVVYFDDILIYSKTYEDHLHHLKQFLFVLRSEKIY 58
+ KFVVVYFDDILIYSK+ +H +HL+ LR +++
Sbjct: 689 RLMNEVLRPFIGKFVVVYFDDILIYSKSMGEHFNHLRAVFNALRDARLF 737
>gb|AAQ56338.1| putative gag-pol polyprotein [Oryza sativa Japonica Group]
Length = 1619
Score = 80.1 bits (196), Expect(2) = 2e-16
Identities = 37/45 (82%), Positives = 38/45 (84%)
Frame = -2
Query: 301 GD*WKTTFTIDFGLYEWLVMPFGLTNAPSTFMRLMHHVLRNFIGK 167
GD WKT F FGLYEWLVMPFGLTNAPSTFMRLM+ VLR FIGK
Sbjct: 800 GDEWKTAFKTKFGLYEWLVMPFGLTNAPSTFMRLMNEVLRPFIGK 844
Score = 31.2 bits (69), Expect(2) = 2e-16
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = -1
Query: 74 EVRKYTNIGKCEFCLEKVTFLAYV 3
+ R + N+ KC FC ++V+FL YV
Sbjct: 876 DARLFGNLEKCTFCTDRVSFLGYV 899
Score = 63.5 bits (153), Expect = 3e-08
Identities = 40/109 (36%), Positives = 55/109 (50%)
Frame = -3
Query: 384 NLLDELHGSQIFSKIDLKSGYHQIRMKKGISGKQLSQ*ILVYMNG*SCXXXXXXXXXHS* 205
++LDEL GS +FSK++L+SGYHQI MK G K +
Sbjct: 772 DMLDELSGSIVFSKVELRSGYHQIHMKLGDEWKTAFKTKFGLYEWLVMPFGLTNAPSTFM 831
Query: 204 DSCIMF*EISLVKFVVVYFDDILIYSKTYEDHLHHLKQFLFVLRSEKIY 58
+ KFVVVYFDDILIYSK+ +H +HL+ LR +++
Sbjct: 832 RLMNEVLRPFIGKFVVVYFDDILIYSKSMGEHFNHLRAVFNALRDARLF 880
>gb|AAM94350.1| gag-pol polyprotein [Zea mays]
Length = 1618
Score = 80.1 bits (196), Expect(2) = 2e-16
Identities = 37/45 (82%), Positives = 38/45 (84%)
Frame = -2
Query: 301 GD*WKTTFTIDFGLYEWLVMPFGLTNAPSTFMRLMHHVLRNFIGK 167
GD WKT F FGLYEWLVMPFGLTNAPSTFMRLM+ VLR FIGK
Sbjct: 824 GDEWKTAFKTKFGLYEWLVMPFGLTNAPSTFMRLMNEVLRAFIGK 868
Score = 31.2 bits (69), Expect(2) = 2e-16
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = -1
Query: 74 EVRKYTNIGKCEFCLEKVTFLAYV 3
+ R + N+ KC FC ++V+FL YV
Sbjct: 900 DARLFGNLEKCTFCTDRVSFLGYV 923
Score = 67.0 bits (162), Expect = 2e-09
Identities = 40/109 (36%), Positives = 57/109 (52%)
Frame = -3
Query: 384 NLLDELHGSQIFSKIDLKSGYHQIRMKKGISGKQLSQ*ILVYMNG*SCXXXXXXXXXHS* 205
++LDEL G+ +FSK+DL+SGYHQIRMK G K +
Sbjct: 796 DMLDELSGAIVFSKVDLRSGYHQIRMKLGDEWKTAFKTKFGLYEWLVMPFGLTNAPSTFM 855
Query: 204 DSCIMF*EISLVKFVVVYFDDILIYSKTYEDHLHHLKQFLFVLRSEKIY 58
+ KFVVVYFDDILIYSK+ ++H+ H++ LR +++
Sbjct: 856 RLMNEVLRAFIGKFVVVYFDDILIYSKSMDEHVDHMRAVFNALRDARLF 904
>emb|CAE02877.1| OSJNBb0022F23.14 [Oryza sativa Japonica Group]
Length = 1431
Score = 80.1 bits (196), Expect(2) = 2e-16
Identities = 37/45 (82%), Positives = 38/45 (84%)
Frame = -2
Query: 301 GD*WKTTFTIDFGLYEWLVMPFGLTNAPSTFMRLMHHVLRNFIGK 167
GD WKT F FGLYEWLVMPFGLTNAPSTFMRLM+ VLR FIGK
Sbjct: 766 GDEWKTAFKTKFGLYEWLVMPFGLTNAPSTFMRLMNEVLRPFIGK 810
Score = 31.2 bits (69), Expect(2) = 2e-16
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = -1
Query: 74 EVRKYTNIGKCEFCLEKVTFLAYV 3
+ R + N+ KC FC ++V+FL YV
Sbjct: 842 DARLFGNLEKCTFCTDRVSFLGYV 865
Score = 66.2 bits (160), Expect = 4e-09
Identities = 42/109 (38%), Positives = 55/109 (50%)
Frame = -3
Query: 384 NLLDELHGSQIFSKIDLKSGYHQIRMKKGISGKQLSQ*ILVYMNG*SCXXXXXXXXXHS* 205
++LDEL GS +FSK+DL+SGYHQIRMK G K +
Sbjct: 738 DMLDELSGSIVFSKVDLRSGYHQIRMKLGDEWKTAFKTKFGLYEWLVMPFGLTNAPSTFM 797
Query: 204 DSCIMF*EISLVKFVVVYFDDILIYSKTYEDHLHHLKQFLFVLRSEKIY 58
+ KFVVVYFDDILIYSK+ +H HL+ LR +++
Sbjct: 798 RLMNEVLRPFIGKFVVVYFDDILIYSKSMGEHFKHLRAVFNALRDARLF 846
>gb|AAX96591.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza
sativa Japonica Group] gi|77550404|gb|ABA93201.1|
retrotransposon protein, putative, Ty3-gypsy subclass
[Oryza sativa Japonica Group]
Length = 1297
Score = 80.1 bits (196), Expect(2) = 2e-16
Identities = 37/45 (82%), Positives = 38/45 (84%)
Frame = -2
Query: 301 GD*WKTTFTIDFGLYEWLVMPFGLTNAPSTFMRLMHHVLRNFIGK 167
GD WKT F + FGLYEWLVMPFGLTNAPSTFMRLM VLR FIGK
Sbjct: 707 GDEWKTAFKMKFGLYEWLVMPFGLTNAPSTFMRLMSEVLRPFIGK 751
Score = 31.2 bits (69), Expect(2) = 2e-16
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = -1
Query: 74 EVRKYTNIGKCEFCLEKVTFLAYV 3
+ R + N+ KC FC ++V+FL YV
Sbjct: 783 DARLFGNLEKCTFCTDRVSFLGYV 806
Score = 68.9 bits (167), Expect = 6e-10
Identities = 45/114 (39%), Positives = 61/114 (53%), Gaps = 5/114 (4%)
Frame = -3
Query: 384 NLLDELHGSQIFSKIDLKSGYHQIRMKKGISGKQLSQ*ILVYMNG*SCXXXXXXXXXHS* 205
++LDEL GS +FSK+DL+SGYHQIRMK G K + M +
Sbjct: 679 DMLDELSGSIVFSKVDLRSGYHQIRMKLGDEWKTAFK-----MKFGLYEWLVMPFGLTNA 733
Query: 204 DSCIMF*EISLV-----KFVVVYFDDILIYSKTYEDHLHHLKQFLFVLRSEKIY 58
S M ++ KFVVVYFDDILIYSK+ +H +HL+ LR +++
Sbjct: 734 PSTFMRLMSEVLRPFIGKFVVVYFDDILIYSKSMGEHFNHLRAVFNALRDARLF 787
>ref|XP_004980495.1| PREDICTED: uncharacterized protein LOC101772114 [Setaria italica]
Length = 1246
Score = 82.0 bits (201), Expect(2) = 2e-16
Identities = 38/45 (84%), Positives = 39/45 (86%)
Frame = -2
Query: 301 GD*WKTTFTIDFGLYEWLVMPFGLTNAPSTFMRLMHHVLRNFIGK 167
GD WKTTF FGLYEWLVMP GLTNAPSTFMRLM+HVLR FIGK
Sbjct: 767 GDEWKTTFKTKFGLYEWLVMPSGLTNAPSTFMRLMNHVLRAFIGK 811
Score = 29.3 bits (64), Expect(2) = 2e-16
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = -1
Query: 62 YTNIGKCEFCLEKVTFLAYV 3
Y NI KC FC + V FL +V
Sbjct: 847 YGNIAKCTFCTDHVVFLGFV 866
Score = 80.9 bits (198), Expect = 2e-13
Identities = 51/115 (44%), Positives = 68/115 (59%), Gaps = 6/115 (5%)
Frame = -3
Query: 384 NLLDELHGSQIFSKIDLKSGYHQIRMKKGISGKQLSQ*I------LVYMNG*SCXXXXXX 223
++LDEL GS IF+KIDL+SGYHQIRMK G K + LV +G +
Sbjct: 739 DMLDELSGSTIFTKIDLRSGYHQIRMKIGDEWKTTFKTKFGLYEWLVMPSGLTNAPSTFM 798
Query: 222 XXXHS*DSCIMF*EISLVKFVVVYFDDILIYSKTYEDHLHHLKQFLFVLRSEKIY 58
+ + KFVVVYFDDILIYSK++++HL H++Q L VLR +K+Y
Sbjct: 799 RLMNH------VLRAFIGKFVVVYFDDILIYSKSFDEHLDHIRQVLSVLRDDKLY 847
>gb|AAX96647.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza
sativa Japonica Group]
Length = 1238
Score = 80.1 bits (196), Expect(2) = 2e-16
Identities = 37/45 (82%), Positives = 38/45 (84%)
Frame = -2
Query: 301 GD*WKTTFTIDFGLYEWLVMPFGLTNAPSTFMRLMHHVLRNFIGK 167
GD WKT F + FGLYEWLVMPFGLTNAPSTFMRLM VLR FIGK
Sbjct: 685 GDEWKTAFKMKFGLYEWLVMPFGLTNAPSTFMRLMSEVLRPFIGK 729
Score = 31.2 bits (69), Expect(2) = 2e-16
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = -1
Query: 74 EVRKYTNIGKCEFCLEKVTFLAYV 3
+ R + N+ KC FC ++V+FL YV
Sbjct: 761 DARLFGNLEKCTFCTDRVSFLGYV 784
Score = 68.9 bits (167), Expect = 6e-10
Identities = 45/114 (39%), Positives = 61/114 (53%), Gaps = 5/114 (4%)
Frame = -3
Query: 384 NLLDELHGSQIFSKIDLKSGYHQIRMKKGISGKQLSQ*ILVYMNG*SCXXXXXXXXXHS* 205
++LDEL GS +FSK+DL+SGYHQIRMK G K + M +
Sbjct: 657 DMLDELSGSIVFSKVDLRSGYHQIRMKLGDEWKTAFK-----MKFGLYEWLVMPFGLTNA 711
Query: 204 DSCIMF*EISLV-----KFVVVYFDDILIYSKTYEDHLHHLKQFLFVLRSEKIY 58
S M ++ KFVVVYFDDILIYSK+ +H +HL+ LR +++
Sbjct: 712 PSTFMRLMSEVLRPFIGKFVVVYFDDILIYSKSMGEHFNHLRAVFNALRDARLF 765