BLASTX nr result
ID: Catharanthus22_contig00037814
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Catharanthus22_contig00037814
(411 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|EXB73293.1| Retrovirus-related Pol polyprotein from transposo... 58 5e-15
emb|CAN69199.1| hypothetical protein VITISV_025494 [Vitis vinifera] 64 1e-13
emb|CAN80490.1| hypothetical protein VITISV_004703 [Vitis vinifera] 63 7e-13
emb|CAA20201.1| putative transposable element [Arabidopsis thali... 62 4e-12
gb|AAC62132.1| copia-like retroelement pol polyprotein [Arabidop... 59 3e-11
emb|CAN61272.1| hypothetical protein VITISV_039063 [Vitis vinifera] 53 6e-11
emb|CAN65222.1| hypothetical protein VITISV_038665 [Vitis vinifera] 53 6e-11
gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|1337118... 56 6e-11
emb|CAN77659.1| hypothetical protein VITISV_030914 [Vitis vinifera] 55 1e-10
emb|CAN80993.1| hypothetical protein VITISV_022128 [Vitis vinifera] 71 2e-10
emb|CAN72704.1| hypothetical protein VITISV_016225 [Vitis vinifera] 71 2e-10
emb|CAN61630.1| hypothetical protein VITISV_003191 [Vitis vinifera] 58 2e-10
gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subc... 50 2e-10
gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-... 50 3e-10
emb|CAH66122.1| OSIGBa0146N20.7 [Oryza sativa Indica Group] 50 3e-10
gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subc... 50 3e-10
emb|CAH65740.1| OSIGBa0127D24.3 [Oryza sativa Indica Group] 50 3e-10
gb|AAD19773.1| putative retroelement pol polyprotein [Arabidopsi... 55 5e-10
gb|AAD17414.1| copia-like retroelement pol polyprotein [Arabidop... 53 5e-10
gb|AAD32759.1| putative retroelement pol polyprotein [Arabidopsi... 58 7e-10
>gb|EXB73293.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Morus
notabilis]
Length = 1822
Score = 57.8 bits (138), Expect(2) = 5e-15
Identities = 24/49 (48%), Positives = 35/49 (71%)
Frame = -2
Query: 332 KGKLDPRSKKGVFIGYPSGVKGYIVWLKGEPGVRIVVSRDIIFNELDMH 186
+GKLDPR+KK +F+GYP GVKGY +W K + +SRD++F E + +
Sbjct: 127 EGKLDPRAKKCMFVGYPEGVKGYKLWCKYGNTSKSFISRDVVFRETEYY 175
Score = 48.5 bits (114), Expect(2) = 5e-15
Identities = 19/29 (65%), Positives = 23/29 (79%)
Frame = -1
Query: 411 TPIELWTDQPPNLSNLRVFGCAAFAHQRE 325
TP E+WTD P N NL+VFGC A+AHQ+E
Sbjct: 99 TPEEVWTDYPLNFENLKVFGCTAYAHQKE 127
>emb|CAN69199.1| hypothetical protein VITISV_025494 [Vitis vinifera]
Length = 540
Score = 63.9 bits (154), Expect(2) = 1e-13
Identities = 29/55 (52%), Positives = 39/55 (70%)
Frame = -2
Query: 332 KGKLDPRSKKGVFIGYPSGVKGYIVWLKGEPGVRIVVSRDIIFNELDMHCRRIET 168
+GKL RS K +F+GYP GVKGY +W K GV+I++SRD++FNE +M R T
Sbjct: 359 EGKLVTRSIKCIFLGYPEGVKGYKLWNKESSGVKIIISRDVVFNENEMLFMRTNT 413
Score = 37.7 bits (86), Expect(2) = 1e-13
Identities = 13/26 (50%), Positives = 18/26 (69%)
Frame = -1
Query: 402 ELWTDQPPNLSNLRVFGCAAFAHQRE 325
ELW+ +P N +LR+FGC + HQ E
Sbjct: 334 ELWSGKPSNYDHLRIFGCTTYVHQSE 359
>emb|CAN80490.1| hypothetical protein VITISV_004703 [Vitis vinifera]
Length = 777
Score = 63.2 bits (152), Expect(2) = 7e-13
Identities = 28/55 (50%), Positives = 39/55 (70%)
Frame = -2
Query: 332 KGKLDPRSKKGVFIGYPSGVKGYIVWLKGEPGVRIVVSRDIIFNELDMHCRRIET 168
+GKL+PRS K +F+GY GVKGY +W K GV+I++S D++FNE +M R T
Sbjct: 342 EGKLEPRSIKCIFLGYLEGVKGYRLWNKESMGVKIIISHDVVFNENEMLSMRTNT 396
Score = 35.8 bits (81), Expect(2) = 7e-13
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = -1
Query: 411 TPIELWTDQPPNLSNLRVFGCAAFAHQRE 325
TP ELW + N + R+FGC A+ HQ E
Sbjct: 314 TPEELWFGKSSNYEHHRIFGCTAYVHQSE 342
>emb|CAA20201.1| putative transposable element [Arabidopsis thaliana]
gi|7268932|emb|CAB79135.1| putative transposable element
[Arabidopsis thaliana]
Length = 1308
Score = 62.0 bits (149), Expect(2) = 4e-12
Identities = 39/99 (39%), Positives = 59/99 (59%), Gaps = 8/99 (8%)
Frame = -2
Query: 332 KGKLDPRSKKGVFIGYPSGVKGYIVWLKGEPGVRIVVSRDIIFNELDMHCRRIETKHEGE 153
+GKL PR+ KGVF+GYP G KGY VWL E + V+SR+I+FNE ++ + I E
Sbjct: 668 QGKLKPRALKGVFLGYPQGTKGYKVWLLDEE--KCVISRNIVFNENQVY-KDIRESSEQS 724
Query: 152 IRLVDCVLAW-----LVKERLDCSCA*GLS---IDRESE 60
++ + + + VKE +CS G++ ID+ES+
Sbjct: 725 VKDISDLEGYNEFQVSVKEHGECSKTGGVTIEEIDQESD 763
Score = 34.7 bits (78), Expect(2) = 4e-12
Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Frame = -1
Query: 408 PIELWTDQPPNLSNLRVFGCAAFAH--QREVRP 316
P ELW D+ P +LR FGC A+ H Q +++P
Sbjct: 641 PEELWLDKKPGYKHLRRFGCIAYVHLDQGKLKP 673
>gb|AAC62132.1| copia-like retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1137
Score = 58.9 bits (141), Expect(2) = 3e-11
Identities = 26/45 (57%), Positives = 36/45 (80%)
Frame = -2
Query: 332 KGKLDPRSKKGVFIGYPSGVKGYIVWLKGEPGVRIVVSRDIIFNE 198
+GKLDPR+KKGVF+GYP+GVKG+ VW+ E R +SR+++F E
Sbjct: 472 EGKLDPRAKKGVFVGYPNGVKGFRVWMIEEE--RCSISRNVVFRE 514
Score = 34.7 bits (78), Expect(2) = 3e-11
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = -1
Query: 408 PIELWTDQPPNLSNLRVFGCAAFAHQRE 325
P ELWT PN S L+ FGC + + +E
Sbjct: 445 PEELWTSAVPNFSGLKRFGCVVYVYSQE 472
>emb|CAN61272.1| hypothetical protein VITISV_039063 [Vitis vinifera]
Length = 1643
Score = 53.1 bits (126), Expect(2) = 6e-11
Identities = 23/53 (43%), Positives = 36/53 (67%)
Frame = -2
Query: 329 GKLDPRSKKGVFIGYPSGVKGYIVWLKGEPGVRIVVSRDIIFNELDMHCRRIE 171
GKL+PR+ K +F+GY +GVKGY +W + + ++SRD+ F+E M +R E
Sbjct: 985 GKLEPRAMKCIFLGYATGVKGYRLWCTEDRTPKFIISRDVTFDESAMFGQRKE 1037
Score = 39.3 bits (90), Expect(2) = 6e-11
Identities = 14/26 (53%), Positives = 20/26 (76%)
Frame = -1
Query: 411 TPIELWTDQPPNLSNLRVFGCAAFAH 334
TP E+W+ +P N S L++FGC A+AH
Sbjct: 956 TPQEVWSGKPSNYSGLKIFGCPAYAH 981
>emb|CAN65222.1| hypothetical protein VITISV_038665 [Vitis vinifera]
Length = 1562
Score = 53.1 bits (126), Expect(2) = 6e-11
Identities = 23/53 (43%), Positives = 36/53 (67%)
Frame = -2
Query: 329 GKLDPRSKKGVFIGYPSGVKGYIVWLKGEPGVRIVVSRDIIFNELDMHCRRIE 171
GKL+PR+ K +F+GY +GVKGY +W + + ++SRD+ F+E M +R E
Sbjct: 772 GKLEPRAMKCIFLGYATGVKGYRLWCTEDRTPKFIISRDVTFDESAMFGQRKE 824
Score = 39.3 bits (90), Expect(2) = 6e-11
Identities = 14/26 (53%), Positives = 20/26 (76%)
Frame = -1
Query: 411 TPIELWTDQPPNLSNLRVFGCAAFAH 334
TP E+W+ +P N S L++FGC A+AH
Sbjct: 743 TPQEVWSGKPSNYSGLKIFGCPAYAH 768
>gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|133711819|gb|ABO36636.1|
copia LTR rider [Solanum lycopersicum]
Length = 1307
Score = 56.2 bits (134), Expect(2) = 6e-11
Identities = 23/45 (51%), Positives = 36/45 (80%)
Frame = -2
Query: 332 KGKLDPRSKKGVFIGYPSGVKGYIVWLKGEPGVRIVVSRDIIFNE 198
+GKL+PR+KKGVF+GY GVKG+ +W E R+++SR+++F+E
Sbjct: 650 EGKLEPRAKKGVFVGYGDGVKGFRIWSPAEK--RVIMSRNVVFDE 692
Score = 36.2 bits (82), Expect(2) = 6e-11
Identities = 13/29 (44%), Positives = 20/29 (68%)
Frame = -1
Query: 411 TPIELWTDQPPNLSNLRVFGCAAFAHQRE 325
TP+E+W+ + + SNL+ FGC A+ H E
Sbjct: 622 TPMEMWSGKAADYSNLKAFGCTAYYHVSE 650
>emb|CAN77659.1| hypothetical protein VITISV_030914 [Vitis vinifera]
Length = 626
Score = 54.7 bits (130), Expect(2) = 1e-10
Identities = 27/80 (33%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Frame = -2
Query: 338 HIK-GKLDPRSKKGVFIGYPSGVKGYIVWLKGEPGVRIVVSRDIIFNELDMHCRRIETKH 162
HIK KL PR+ K +F+GY G+KGY +W + V+S D++FNE++M +
Sbjct: 260 HIKQDKLKPRALKCIFLGYSDGIKGYKLWCIEPGNEKCVISXDVVFNEVNMPLSKAPKSD 319
Query: 161 EGEIRLVDCVLAWLVKERLD 102
+ + +L+ + KE L+
Sbjct: 320 HTQXTSIRTILSIVAKEDLE 339
Score = 37.0 bits (84), Expect(2) = 1e-10
Identities = 13/29 (44%), Positives = 20/29 (68%)
Frame = -1
Query: 411 TPIELWTDQPPNLSNLRVFGCAAFAHQRE 325
TP E W P + NL++FGC+A+AH ++
Sbjct: 235 TPPEAWLRHPADYGNLKIFGCSAYAHIKQ 263
>emb|CAN80993.1| hypothetical protein VITISV_022128 [Vitis vinifera]
Length = 1017
Score = 70.9 bits (172), Expect = 2e-10
Identities = 33/75 (44%), Positives = 48/75 (64%)
Frame = -2
Query: 392 PTNHQTFPTLECLGVLLLHIKGKLDPRSKKGVFIGYPSGVKGYIVWLKGEPGVRIVVSRD 213
P+N+ C+ + +GKL PRS K +F+GYP GVKGY +W K PGV+I++SRD
Sbjct: 156 PSNYDHLRIFGCI-TYVHQSEGKLKPRSIKCIFLGYPEGVKGYRLWYKESPGVKIIISRD 214
Query: 212 IIFNELDMHCRRIET 168
++FNE ++ R T
Sbjct: 215 VMFNENEILSMRTNT 229
>emb|CAN72704.1| hypothetical protein VITISV_016225 [Vitis vinifera]
Length = 817
Score = 70.9 bits (172), Expect = 2e-10
Identities = 33/65 (50%), Positives = 45/65 (69%), Gaps = 3/65 (4%)
Frame = -2
Query: 332 KGKLDPRSKKGVFIGYPSGVKGYIVWLKGEPGVRIVVSRDIIFNE---LDMHCRRIETKH 162
+GKL+PRS K +F+G+P GVKGY +W K PGV+I++SRD++FNE L M TK
Sbjct: 235 EGKLEPRSIKCIFLGHPEGVKGYRLWNKESPGVKIIISRDVVFNENEMLSMRTNTAGTKE 294
Query: 161 EGEIR 147
+ E R
Sbjct: 295 DSENR 299
>emb|CAN61630.1| hypothetical protein VITISV_003191 [Vitis vinifera]
Length = 1208
Score = 57.8 bits (138), Expect(2) = 2e-10
Identities = 23/46 (50%), Positives = 35/46 (76%)
Frame = -2
Query: 326 KLDPRSKKGVFIGYPSGVKGYIVWLKGEPGVRIVVSRDIIFNELDM 189
KL+PR+ K +F+GYP GVKGY +W++ + + ++SRD+ FNE DM
Sbjct: 632 KLEPRAVKCIFLGYPKGVKGYKLWIETQGKGKCIISRDVTFNEQDM 677
Score = 33.1 bits (74), Expect(2) = 2e-10
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = -1
Query: 411 TPIELWTDQPPNLSNLRVFGCAAFAHQR 328
TP E WT + + +L+VFGC A+ H +
Sbjct: 602 TPQEKWTGKAADYQHLKVFGCTAYVHTK 629
>gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1333
Score = 50.1 bits (118), Expect(2) = 2e-10
Identities = 27/62 (43%), Positives = 39/62 (62%)
Frame = -2
Query: 329 GKLDPRSKKGVFIGYPSGVKGYIVWLKGEPGVRIVVSRDIIFNELDMHCRRIETKHEGEI 150
GKL+PR+ K +F+GY SGVKGY +W E G + +SR ++FNE M + ++H E
Sbjct: 665 GKLEPRAVKCLFLGYGSGVKGYKLW-NPETG-KTFMSRSVVFNESVMFTNSLPSEHVPEK 722
Query: 149 RL 144
L
Sbjct: 723 EL 724
Score = 40.4 bits (93), Expect(2) = 2e-10
Identities = 15/26 (57%), Positives = 20/26 (76%)
Frame = -1
Query: 411 TPIELWTDQPPNLSNLRVFGCAAFAH 334
TPIE+W+ P + S L+VFGC A+AH
Sbjct: 636 TPIEVWSGMPADYSQLKVFGCTAYAH 661
>gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza
sativa Japonica Group] gi|77549942|gb|ABA92739.1|
retrotransposon protein, putative, Ty1-copia subclass
[Oryza sativa Japonica Group]
Length = 1373
Score = 50.1 bits (118), Expect(2) = 3e-10
Identities = 27/62 (43%), Positives = 39/62 (62%)
Frame = -2
Query: 329 GKLDPRSKKGVFIGYPSGVKGYIVWLKGEPGVRIVVSRDIIFNELDMHCRRIETKHEGEI 150
GKL+PR+ K +F+GY SGVKGY +W E G + +SR ++FNE M + ++H E
Sbjct: 665 GKLEPRAVKCLFLGYGSGVKGYKLW-NPETG-KTFMSRSVVFNESVMFTNSLPSEHVPEK 722
Query: 149 RL 144
L
Sbjct: 723 EL 724
Score = 40.0 bits (92), Expect(2) = 3e-10
Identities = 15/26 (57%), Positives = 20/26 (76%)
Frame = -1
Query: 411 TPIELWTDQPPNLSNLRVFGCAAFAH 334
TPIE+W+ P + S L+VFGC A+AH
Sbjct: 636 TPIEVWSGTPADYSQLKVFGCTAYAH 661
>emb|CAH66122.1| OSIGBa0146N20.7 [Oryza sativa Indica Group]
Length = 1335
Score = 50.1 bits (118), Expect(2) = 3e-10
Identities = 27/62 (43%), Positives = 39/62 (62%)
Frame = -2
Query: 329 GKLDPRSKKGVFIGYPSGVKGYIVWLKGEPGVRIVVSRDIIFNELDMHCRRIETKHEGEI 150
GKL+PR+ K +F+GY SGVKGY +W E G + +SR ++FNE M + ++H E
Sbjct: 667 GKLEPRAVKCLFLGYGSGVKGYKLW-NPETG-KTFMSRSVVFNESVMFTNSLPSEHVPEK 724
Query: 149 RL 144
L
Sbjct: 725 EL 726
Score = 40.0 bits (92), Expect(2) = 3e-10
Identities = 15/26 (57%), Positives = 20/26 (76%)
Frame = -1
Query: 411 TPIELWTDQPPNLSNLRVFGCAAFAH 334
TPIE+W+ P + S L+VFGC A+AH
Sbjct: 638 TPIEVWSGTPADYSQLKVFGCTAYAH 663
>gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1333
Score = 50.1 bits (118), Expect(2) = 3e-10
Identities = 27/62 (43%), Positives = 39/62 (62%)
Frame = -2
Query: 329 GKLDPRSKKGVFIGYPSGVKGYIVWLKGEPGVRIVVSRDIIFNELDMHCRRIETKHEGEI 150
GKL+PR+ K +F+GY SGVKGY +W E G + +SR ++FNE M + ++H E
Sbjct: 665 GKLEPRAVKCLFLGYGSGVKGYKLW-NPETG-KTFMSRSVVFNESVMFTNSLPSEHVPEK 722
Query: 149 RL 144
L
Sbjct: 723 EL 724
Score = 40.0 bits (92), Expect(2) = 3e-10
Identities = 15/26 (57%), Positives = 20/26 (76%)
Frame = -1
Query: 411 TPIELWTDQPPNLSNLRVFGCAAFAH 334
TPIE+W+ P + S L+VFGC A+AH
Sbjct: 636 TPIEVWSGTPADYSQLKVFGCTAYAH 661
>emb|CAH65740.1| OSIGBa0127D24.3 [Oryza sativa Indica Group]
Length = 1009
Score = 50.4 bits (119), Expect(2) = 3e-10
Identities = 21/44 (47%), Positives = 34/44 (77%)
Frame = -2
Query: 329 GKLDPRSKKGVFIGYPSGVKGYIVWLKGEPGVRIVVSRDIIFNE 198
GKL+PR+ K +F+GYPSGVKGY +W ++V++R+++F+E
Sbjct: 494 GKLEPRAIKCIFLGYPSGVKGYKLWCPETK--KVVINRNVVFHE 535
Score = 39.7 bits (91), Expect(2) = 3e-10
Identities = 15/26 (57%), Positives = 19/26 (73%)
Frame = -1
Query: 411 TPIELWTDQPPNLSNLRVFGCAAFAH 334
TPIE+W+ P S+LRVF C A+AH
Sbjct: 465 TPIEVWSSSPAKYSDLRVFSCTAYAH 490
>gb|AAD19773.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1335
Score = 55.5 bits (132), Expect(2) = 5e-10
Identities = 25/45 (55%), Positives = 34/45 (75%)
Frame = -2
Query: 332 KGKLDPRSKKGVFIGYPSGVKGYIVWLKGEPGVRIVVSRDIIFNE 198
+GKL+PRSKKG+F YP GVKGY VW+ + + V+SR++IF E
Sbjct: 654 QGKLNPRSKKGIFTSYPEGVKGYKVWVLEDK--KCVISRNVIFRE 696
Score = 33.9 bits (76), Expect(2) = 5e-10
Identities = 14/25 (56%), Positives = 17/25 (68%)
Frame = -1
Query: 408 PIELWTDQPPNLSNLRVFGCAAFAH 334
P E WT P+LS+LR FGC A+ H
Sbjct: 627 PEEKWTGALPDLSSLRKFGCLAYIH 651
>gb|AAD17414.1| copia-like retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1166
Score = 52.8 bits (125), Expect(2) = 5e-10
Identities = 23/47 (48%), Positives = 33/47 (70%)
Frame = -2
Query: 326 KLDPRSKKGVFIGYPSGVKGYIVWLKGEPGVRIVVSRDIIFNELDMH 186
K PR+ KGVF+GYP G+KGY VWL E + SR+++FNE +++
Sbjct: 563 KTSPRAVKGVFMGYPCGIKGYRVWLPKEG--KCTTSRNVVFNETELY 607
Score = 36.6 bits (83), Expect(2) = 5e-10
Identities = 14/25 (56%), Positives = 19/25 (76%)
Frame = -1
Query: 408 PIELWTDQPPNLSNLRVFGCAAFAH 334
P E+WT P+LS+LR FGC+A+ H
Sbjct: 534 PEEVWTGTKPDLSHLRRFGCSAYVH 558
>gb|AAD32759.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1356
Score = 58.2 bits (139), Expect(2) = 7e-10
Identities = 29/44 (65%), Positives = 34/44 (77%)
Frame = -2
Query: 329 GKLDPRSKKGVFIGYPSGVKGYIVWLKGEPGVRIVVSRDIIFNE 198
GKL+PR+KKGV IGYP GVKGY VW+ E + VVSR+IIF E
Sbjct: 679 GKLEPRAKKGVLIGYPVGVKGYKVWILDER--KCVVSRNIIFQE 720
Score = 30.8 bits (68), Expect(2) = 7e-10
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = -1
Query: 408 PIELWTDQPPNLSNLRVFGCAAFAH 334
P + W+ PP S LR +GC AF H
Sbjct: 651 PDKKWSGNPPVYSYLRRYGCVAFVH 675