BLASTX nr result
ID: Catharanthus22_contig00037352
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Catharanthus22_contig00037352
(363 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAB10337.1| reverse transcriptase like protein [Arabidopsis ... 59 4e-10
dbj|BAE79384.1| unnamed protein product [Ipomoea batatas] 60 3e-09
dbj|BAE79385.1| unnamed protein product [Ipomoea batatas] 60 3e-09
dbj|BAE79382.1| unnamed protein product [Ipomoea batatas] 60 3e-09
ref|XP_004306074.1| PREDICTED: putative ribonuclease H protein A... 54 7e-08
gb|EOY30506.1| Uncharacterized protein TCM_037692 [Theobroma cacao] 54 4e-07
ref|XP_004305437.1| PREDICTED: uncharacterized protein LOC101296... 59 4e-07
gb|ABD28505.2| RNA-directed DNA polymerase (Reverse transcriptas... 52 6e-07
ref|XP_004289445.1| PREDICTED: putative ribonuclease H protein A... 55 7e-06
emb|CCA66040.1| hypothetical protein [Beta vulgaris subsp. vulga... 43 1e-05
>emb|CAB10337.1| reverse transcriptase like protein [Arabidopsis thaliana]
gi|7268307|emb|CAB78601.1| reverse transcriptase like
protein [Arabidopsis thaliana]
Length = 929
Score = 59.3 bits (142), Expect(2) = 4e-10
Identities = 31/85 (36%), Positives = 55/85 (64%), Gaps = 2/85 (2%)
Frame = -3
Query: 250 LLFLPSYSMQAV*LPISVV-QVEKINRAFF*EDRDNRRSFHPLACNTLCQPKASGGLGLR 74
L+ +P ++M ++ LP S++ Q++K++R F +R H L+ +C+PKA+GGLGLR
Sbjct: 595 LMSIPIHTMSSILLPASLLEQLDKVSRNFLWGSTVEKRKQHLLSWKKVCRPKAAGGLGLR 654
Query: 73 KRREINKAFLSKLV*R-INKKAHTW 2
+++N+A L+K+ R +N K W
Sbjct: 655 ASKDMNRALLAKVGWRLLNDKVSLW 679
Score = 30.4 bits (67), Expect(2) = 4e-10
Identities = 13/34 (38%), Positives = 24/34 (70%)
Frame = -1
Query: 363 RKVNIKMFECVVEQMTNKLSGWKARILSRDAKST 262
+++N F V+E+++++LSGWK+R LS + T
Sbjct: 556 KRINKDTFGEVLERVSSRLSGWKSRSLSLAGRIT 589
>dbj|BAE79384.1| unnamed protein product [Ipomoea batatas]
Length = 1898
Score = 59.7 bits (143), Expect(2) = 3e-09
Identities = 33/95 (34%), Positives = 52/95 (54%), Gaps = 1/95 (1%)
Frame = -3
Query: 304 WVESKNFVKGCKVYRMQHLLFLPSYSMQAV*LPISVV-QVEKINRAFF*EDRDNRRSFHP 128
W S + G +V L +P+Y+MQ + LP+S +++K R F N R H
Sbjct: 1315 WKASSLNMAGRRVLVQASLATVPTYTMQVMALPVSTCNEIDKTCRNFLWGHDTNTRKLHS 1374
Query: 127 LACNTLCQPKASGGLGLRKRREINKAFLSKLV*RI 23
+ +C+P+ GGLGLR R+ N+AFL+K+ +I
Sbjct: 1375 VNWAEICKPRNEGGLGLRMARDFNRAFLTKMAWQI 1409
Score = 26.9 bits (58), Expect(2) = 3e-09
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = -1
Query: 360 KVNIKMFECVVEQMTNKLSGWKARILS 280
+V+ F V+++M KLS WKA L+
Sbjct: 1295 RVSRNTFNAVIDKMRTKLSSWKASSLN 1321
>dbj|BAE79385.1| unnamed protein product [Ipomoea batatas]
Length = 1366
Score = 59.7 bits (143), Expect(2) = 3e-09
Identities = 33/95 (34%), Positives = 52/95 (54%), Gaps = 1/95 (1%)
Frame = -3
Query: 304 WVESKNFVKGCKVYRMQHLLFLPSYSMQAV*LPISVV-QVEKINRAFF*EDRDNRRSFHP 128
W S + G +V L +P+Y+MQ + LP+S +++K R F N R H
Sbjct: 783 WKASSLNMAGRRVLVQASLATVPTYTMQVMALPVSTCNEIDKTCRNFLWGHDTNTRKLHS 842
Query: 127 LACNTLCQPKASGGLGLRKRREINKAFLSKLV*RI 23
+ +C+P+ GGLGLR R+ N+AFL+K+ +I
Sbjct: 843 VNWAEICKPRNEGGLGLRMARDFNRAFLTKMAWQI 877
Score = 26.9 bits (58), Expect(2) = 3e-09
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = -1
Query: 360 KVNIKMFECVVEQMTNKLSGWKARILS 280
+V+ F V+++M KLS WKA L+
Sbjct: 763 RVSRNTFNAVIDKMRTKLSSWKASSLN 789
>dbj|BAE79382.1| unnamed protein product [Ipomoea batatas]
Length = 1366
Score = 59.7 bits (143), Expect(2) = 3e-09
Identities = 33/95 (34%), Positives = 52/95 (54%), Gaps = 1/95 (1%)
Frame = -3
Query: 304 WVESKNFVKGCKVYRMQHLLFLPSYSMQAV*LPISVV-QVEKINRAFF*EDRDNRRSFHP 128
W S + G +V L +P+Y+MQ + LP+S +++K R F N R H
Sbjct: 783 WKASSLNMAGRRVLVQASLATVPTYTMQVMALPVSTCNEIDKTCRNFLWGHDTNTRKLHS 842
Query: 127 LACNTLCQPKASGGLGLRKRREINKAFLSKLV*RI 23
+ +C+P+ GGLGLR R+ N+AFL+K+ +I
Sbjct: 843 VNWAEICKPRNEGGLGLRMARDFNRAFLTKMAWQI 877
Score = 26.9 bits (58), Expect(2) = 3e-09
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = -1
Query: 360 KVNIKMFECVVEQMTNKLSGWKARILS 280
+V+ F V+++M KLS WKA L+
Sbjct: 763 RVSRNTFNAVIDKMRTKLSSWKASSLN 789
>ref|XP_004306074.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Fragaria
vesca subsp. vesca]
Length = 407
Score = 53.9 bits (128), Expect(2) = 7e-08
Identities = 23/70 (32%), Positives = 46/70 (65%), Gaps = 1/70 (1%)
Frame = -3
Query: 241 LPSYSMQAV*LPISVVQ-VEKINRAFF*EDRDNRRSFHPLACNTLCQPKASGGLGLRKRR 65
+P+Y+MQ P+S+ + ++K+NR F D + ++ H + + +CQPK G +G++K
Sbjct: 63 IPNYAMQTAKFPVSLCENLDKLNRNFLWGDTEIKKKVHLVNWDVVCQPKQLGDIGIKKTE 122
Query: 64 EINKAFLSKL 35
++N+A L+K+
Sbjct: 123 DMNQAMLAKI 132
Score = 28.1 bits (61), Expect(2) = 7e-08
Identities = 10/33 (30%), Positives = 22/33 (66%)
Frame = -1
Query: 360 KVNIKMFECVVEQMTNKLSGWKARILSRDAKST 262
+VN ++ + +Q+ ++LS WK+++LS + T
Sbjct: 22 RVNKHTYDGIFDQVQSRLSSWKSKVLSMAGRLT 54
>gb|EOY30506.1| Uncharacterized protein TCM_037692 [Theobroma cacao]
Length = 475
Score = 53.9 bits (128), Expect(2) = 4e-07
Identities = 28/72 (38%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Frame = -3
Query: 250 LLFLPSYSMQAV*LPISVVQ-VEKINRAFF*EDRDNRRSFHPLACNTLCQPKASGGLGLR 74
LL++PSY+MQ V +P + +E R F + R H + +C+PK GGLG+R
Sbjct: 317 LLYIPSYAMQTVAIPEKTREKIEMHCRNFLWDGDSKARKIHAMKWKNMCRPKEEGGLGIR 376
Query: 73 KRREINKAFLSK 38
R++N AFL K
Sbjct: 377 CMRKMNNAFLLK 388
Score = 25.4 bits (54), Expect(2) = 4e-07
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = -1
Query: 345 MFECVVEQMTNKLSGWKARILS 280
+F+ + E++ N+LS WKA LS
Sbjct: 284 LFKYLEEKICNRLSSWKASALS 305
>ref|XP_004305437.1| PREDICTED: uncharacterized protein LOC101296313 [Fragaria vesca
subsp. vesca]
Length = 449
Score = 58.9 bits (141), Expect(2) = 4e-07
Identities = 29/74 (39%), Positives = 49/74 (66%), Gaps = 1/74 (1%)
Frame = -3
Query: 241 LPSYSMQAV*LPISVV-QVEKINRAFF*EDRDNRRSFHPLACNTLCQPKASGGLGLRKRR 65
+P Y+MQ +++ +++K+NR F D +N++ H + +T+CQPK GGLG++K
Sbjct: 369 IPMYAMQTAKFHVNLCDKLDKLNRDFILSDVENKKRVHLVNWDTICQPKYLGGLGVKKTA 428
Query: 64 EINKAFLSKLV*RI 23
+IN+A LSK+ RI
Sbjct: 429 DINQAILSKIGWRI 442
Score = 20.4 bits (41), Expect(2) = 4e-07
Identities = 7/27 (25%), Positives = 17/27 (62%)
Frame = -1
Query: 360 KVNIKMFECVVEQMTNKLSGWKARILS 280
+VN + + +++ +L WK+++LS
Sbjct: 328 RVNKCTYAGLFDKVQKRLFSWKSKVLS 354
>gb|ABD28505.2| RNA-directed DNA polymerase (Reverse transcriptase);
Polynucleotidyl transferase, Ribonuclease H fold
[Medicago truncatula]
Length = 729
Score = 51.6 bits (122), Expect(2) = 6e-07
Identities = 26/77 (33%), Positives = 45/77 (58%), Gaps = 1/77 (1%)
Frame = -3
Query: 241 LPSYSMQAV*LPISVV-QVEKINRAFF*EDRDNRRSFHPLACNTLCQPKASGGLGLRKRR 65
+P Y MQ +P ++ ++EKI R F D + R H ++ + C PK +GGLG ++
Sbjct: 230 IPYYHMQYAKIPKTICDEIEKIQRGFVWGDSNQGRKAHLVSWDVCCLPKMNGGLGFKRPH 289
Query: 64 EINKAFLSKLV*RINKK 14
+N+AFL K++ + K+
Sbjct: 290 HMNEAFLMKMLWNLIKQ 306
Score = 27.3 bits (59), Expect(2) = 6e-07
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = -1
Query: 342 FECVVEQMTNKLSGWKARILSRDAKST 262
F ++ ++ NKLSGWK + LS + T
Sbjct: 195 FNHIINKIQNKLSGWKQQCLSLAGRIT 221
>ref|XP_004289445.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Fragaria
vesca subsp. vesca]
Length = 719
Score = 55.5 bits (132), Expect = 7e-06
Identities = 28/79 (35%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Frame = -3
Query: 241 LPSYSMQAV*LPISVVQ-VEKINRAFF*EDRDNRRSFHPLACNTLCQPKASGGLGLRKRR 65
+P Y+MQ LP+S+ + ++K N F D + ++ H + ++C+PK GGLGL+K
Sbjct: 351 IPIYAMQTAKLPLSLCESIDKANINFLWGDSNEKKKIHLVNWESVCKPKHRGGLGLKKTA 410
Query: 64 EINKAFLSKLV*RINKKAH 8
++N+A L+K RI + H
Sbjct: 411 DMNQAMLAKASWRIFQNDH 429
>emb|CCA66040.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
Length = 1362
Score = 42.7 bits (99), Expect(2) = 1e-05
Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Frame = -3
Query: 241 LPSYSMQAV*LPISVV-QVEKINRAFF*EDRDNRRSFHPLACNTLCQPKASGGLGLRKRR 65
+P+Y M LP ++ ++ + F+ D R H + +TLC PK+ GGLG R
Sbjct: 803 IPTYMMSVFSLPSGLIDEIHSLLARFWWGSSDTNRKMHWHSWDTLCYPKSMGGLGFRDLH 862
Query: 64 EINKAFLSKLV*RI 23
N++ L+K R+
Sbjct: 863 CFNQSLLAKQAWRL 876
Score = 32.0 bits (71), Expect(2) = 1e-05
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = -1
Query: 342 FECVVEQMTNKLSGWKARILSRDAK 268
F C+ E++ KL GWK ++LSR K
Sbjct: 768 FACIKERIWKKLQGWKEKLLSRPGK 792