BLASTX nr result
ID: Catharanthus22_contig00037160
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Catharanthus22_contig00037160
(238 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002279887.2| PREDICTED: RNA-binding protein rsd1-like [Vi... 78 1e-12
emb|CBI37850.3| unnamed protein product [Vitis vinifera] 78 1e-12
ref|XP_002516388.1| splicing factor, putative [Ricinus communis]... 73 4e-11
ref|XP_002306193.2| hypothetical protein POPTR_0004s18320g [Popu... 68 1e-09
ref|XP_002312948.2| hypothetical protein POPTR_0009s13940g [Popu... 67 2e-09
gb|EOX97616.1| Splicing factor isoform 4 [Theobroma cacao] 65 1e-08
gb|EOX97613.1| Splicing factor isoform 1 [Theobroma cacao] gi|50... 65 1e-08
gb|EMJ02383.1| hypothetical protein PRUPE_ppa003064mg [Prunus pe... 64 2e-08
gb|EXC16553.1| RNA-binding protein 39 [Morus notabilis] 62 8e-08
ref|XP_004290736.1| PREDICTED: RNA-binding protein 39-like [Frag... 61 1e-07
ref|XP_003526844.1| PREDICTED: RNA-binding protein 39-like [Glyc... 61 1e-07
ref|XP_006427900.1| hypothetical protein CICLE_v10025229mg [Citr... 61 2e-07
ref|XP_006409370.1| hypothetical protein EUTSA_v10022624mg [Eutr... 61 2e-07
gb|EMJ00262.1| hypothetical protein PRUPE_ppa018661mg, partial [... 60 2e-07
gb|ESW09673.1| hypothetical protein PHAVU_009G146500g [Phaseolus... 60 3e-07
gb|ESW09672.1| hypothetical protein PHAVU_009G146500g [Phaseolus... 60 3e-07
gb|ESW09671.1| hypothetical protein PHAVU_009G146500g [Phaseolus... 60 3e-07
ref|XP_006829172.1| hypothetical protein AMTR_s00001p00270600 [A... 59 5e-07
ref|XP_002465838.1| hypothetical protein SORBIDRAFT_01g046740 [S... 59 5e-07
ref|XP_003630170.1| RNA-binding protein [Medicago truncatula] gi... 59 5e-07
>ref|XP_002279887.2| PREDICTED: RNA-binding protein rsd1-like [Vitis vinifera]
Length = 609
Score = 78.2 bits (191), Expect = 1e-12
Identities = 39/73 (53%), Positives = 48/73 (65%), Gaps = 1/73 (1%)
Frame = +2
Query: 20 MGVAGSVGAAPAISPPFVPIGQIPIPVPAGFPTSTFSIPDA-LPLSYTIGNPSECLLLKN 196
+ A +GAAP +SP P+ Q P+P AG P + +P +P TIG PSECL+LKN
Sbjct: 462 LSTAPILGAAPVVSPLVAPLVQAPVPGLAGLPGAGLQVPAVTVPSIDTIGVPSECLMLKN 521
Query: 197 MFDPKLEPEPDFD 235
MFDPKLE EPDFD
Sbjct: 522 MFDPKLETEPDFD 534
>emb|CBI37850.3| unnamed protein product [Vitis vinifera]
Length = 427
Score = 78.2 bits (191), Expect = 1e-12
Identities = 39/73 (53%), Positives = 48/73 (65%), Gaps = 1/73 (1%)
Frame = +2
Query: 20 MGVAGSVGAAPAISPPFVPIGQIPIPVPAGFPTSTFSIPDA-LPLSYTIGNPSECLLLKN 196
+ A +GAAP +SP P+ Q P+P AG P + +P +P TIG PSECL+LKN
Sbjct: 280 LSTAPILGAAPVVSPLVAPLVQAPVPGLAGLPGAGLQVPAVTVPSIDTIGVPSECLMLKN 339
Query: 197 MFDPKLEPEPDFD 235
MFDPKLE EPDFD
Sbjct: 340 MFDPKLETEPDFD 352
>ref|XP_002516388.1| splicing factor, putative [Ricinus communis]
gi|223544486|gb|EEF46005.1| splicing factor, putative
[Ricinus communis]
Length = 609
Score = 72.8 bits (177), Expect = 4e-11
Identities = 39/77 (50%), Positives = 47/77 (61%), Gaps = 2/77 (2%)
Frame = +2
Query: 11 SDGMGV--AGSVGAAPAISPPFVPIGQIPIPVPAGFPTSTFSIPDALPLSYTIGNPSECL 184
S G+ V A +GAAP I P P+ P G P ++ +P A+P TIG PSECL
Sbjct: 458 STGLAVPTAPILGAAPVIPPIVAPLISGSAPAFPGLPGASVQLPGAIPSVDTIGVPSECL 517
Query: 185 LLKNMFDPKLEPEPDFD 235
LLKNMFDP +E EPDFD
Sbjct: 518 LLKNMFDPSIETEPDFD 534
>ref|XP_002306193.2| hypothetical protein POPTR_0004s18320g [Populus trichocarpa]
gi|550341316|gb|EEE86704.2| hypothetical protein
POPTR_0004s18320g [Populus trichocarpa]
Length = 609
Score = 68.2 bits (165), Expect = 1e-09
Identities = 33/67 (49%), Positives = 40/67 (59%), Gaps = 1/67 (1%)
Frame = +2
Query: 38 VGAAPAISPPFVPIGQIPIPVPAGFPTSTFSIP-DALPLSYTIGNPSECLLLKNMFDPKL 214
+GA P +SP P+ +P G P +P A+P TIG PS+CL LKNMFDPK
Sbjct: 468 LGATPVVSPAVAPLLSGSVPAIPGLPVPGLQLPATAIPTMDTIGVPSDCLFLKNMFDPKT 527
Query: 215 EPEPDFD 235
E EPDFD
Sbjct: 528 ETEPDFD 534
>ref|XP_002312948.2| hypothetical protein POPTR_0009s13940g [Populus trichocarpa]
gi|550331684|gb|EEE86903.2| hypothetical protein
POPTR_0009s13940g [Populus trichocarpa]
Length = 599
Score = 67.4 bits (163), Expect = 2e-09
Identities = 33/67 (49%), Positives = 42/67 (62%), Gaps = 1/67 (1%)
Frame = +2
Query: 38 VGAAPAISPPFVPIGQIPIPVPAGFPTSTFSIP-DALPLSYTIGNPSECLLLKNMFDPKL 214
+GAAPA+SP P+ + G P + +P +P TIG PS+C+LLKNMFDPK
Sbjct: 458 LGAAPAVSPAIAPLLSGSVLAIPGLPVAGLQLPATTIPTVETIGVPSDCILLKNMFDPKK 517
Query: 215 EPEPDFD 235
E EPDFD
Sbjct: 518 ETEPDFD 524
>gb|EOX97616.1| Splicing factor isoform 4 [Theobroma cacao]
Length = 452
Score = 64.7 bits (156), Expect = 1e-08
Identities = 34/67 (50%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Frame = +2
Query: 38 VGAAPAISPPFVPIGQIPIPVPAGFPTSTFSIP-DALPLSYTIGNPSECLLLKNMFDPKL 214
+GAAPA+ P Q + +G P +P + +P TIG PSECLLLKNMFDP L
Sbjct: 307 LGAAPAVPSLVPPTLQAHVRTISGLPGVGLQLPSNGIPTIDTIGTPSECLLLKNMFDPDL 366
Query: 215 EPEPDFD 235
E EPDFD
Sbjct: 367 ETEPDFD 373
>gb|EOX97613.1| Splicing factor isoform 1 [Theobroma cacao]
gi|508705718|gb|EOX97614.1| Splicing factor isoform 1
[Theobroma cacao]
Length = 581
Score = 64.7 bits (156), Expect = 1e-08
Identities = 34/67 (50%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Frame = +2
Query: 38 VGAAPAISPPFVPIGQIPIPVPAGFPTSTFSIP-DALPLSYTIGNPSECLLLKNMFDPKL 214
+GAAPA+ P Q + +G P +P + +P TIG PSECLLLKNMFDP L
Sbjct: 436 LGAAPAVPSLVPPTLQAHVRTISGLPGVGLQLPSNGIPTIDTIGTPSECLLLKNMFDPDL 495
Query: 215 EPEPDFD 235
E EPDFD
Sbjct: 496 ETEPDFD 502
>gb|EMJ02383.1| hypothetical protein PRUPE_ppa003064mg [Prunus persica]
Length = 607
Score = 64.3 bits (155), Expect = 2e-08
Identities = 37/67 (55%), Positives = 42/67 (62%), Gaps = 1/67 (1%)
Frame = +2
Query: 38 VGAAPAISPPFVPIGQIPIPVPAGFPTSTFSIPDA-LPLSYTIGNPSECLLLKNMFDPKL 214
+GAAP +SP PI +P AG IP A LP TIG PSECLLLKNMFDP +
Sbjct: 468 LGAAPVVSPLVPPI--TAVPGIAGLGVGGLQIPTAILPSIDTIGVPSECLLLKNMFDPAV 525
Query: 215 EPEPDFD 235
E EP+FD
Sbjct: 526 ETEPNFD 532
>gb|EXC16553.1| RNA-binding protein 39 [Morus notabilis]
Length = 811
Score = 62.0 bits (149), Expect = 8e-08
Identities = 34/67 (50%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Frame = +2
Query: 38 VGAAPAISPPFVPIGQIPIPVPAGFPTSTFSIPDA-LPLSYTIGNPSECLLLKNMFDPKL 214
+GAAP +SP + PIP AG + F +P +P TIG PSECL LKNMFDP
Sbjct: 337 LGAAPVVSPLSASVA--PIPALAGLGGAGFQVPAVTVPSIDTIGAPSECLQLKNMFDPAA 394
Query: 215 EPEPDFD 235
E EP+FD
Sbjct: 395 ETEPNFD 401
>ref|XP_004290736.1| PREDICTED: RNA-binding protein 39-like [Fragaria vesca subsp.
vesca]
Length = 588
Score = 61.2 bits (147), Expect = 1e-07
Identities = 39/77 (50%), Positives = 45/77 (58%), Gaps = 2/77 (2%)
Frame = +2
Query: 11 SDGMGVAGSVGAAPAISPPFVPIGQIPIPVPAGFPTSTFSIPDA-LPLSYTIGNPSECLL 187
S G+ VA +GAAP IS P+ +P G P IP A +P TIG PSECLL
Sbjct: 439 STGLPVAPILGAAPGISSLVAPMASVPGLAGLGVPG--LQIPTATVPSVDTIGVPSECLL 496
Query: 188 LKNMFDPK-LEPEPDFD 235
L NMFDPK +E EPD D
Sbjct: 497 LTNMFDPKEIEAEPDID 513
>ref|XP_003526844.1| PREDICTED: RNA-binding protein 39-like [Glycine max]
Length = 549
Score = 61.2 bits (147), Expect = 1e-07
Identities = 40/82 (48%), Positives = 45/82 (54%), Gaps = 8/82 (9%)
Frame = +2
Query: 14 DGMGVAGSVGA--APAISPP---FVPIGQ---IPIPVPAGFPTSTFSIPDALPLSYTIGN 169
D G+A S+G A SP +PIG +P PA PT IP P +GN
Sbjct: 398 DRSGIAASIGLPIANGSSPAQQAIMPIGNPGIVPAVAPA-VPTQIMPIPVTEP----VGN 452
Query: 170 PSECLLLKNMFDPKLEPEPDFD 235
PSECLLLKNMFDP E EPDFD
Sbjct: 453 PSECLLLKNMFDPNTETEPDFD 474
>ref|XP_006427900.1| hypothetical protein CICLE_v10025229mg [Citrus clementina]
gi|568820031|ref|XP_006464535.1| PREDICTED: RNA-binding
protein 39-like [Citrus sinensis]
gi|557529890|gb|ESR41140.1| hypothetical protein
CICLE_v10025229mg [Citrus clementina]
Length = 589
Score = 60.8 bits (146), Expect = 2e-07
Identities = 36/78 (46%), Positives = 48/78 (61%), Gaps = 8/78 (10%)
Frame = +2
Query: 26 VAGSVGAAPAISPPFVP--------IGQIPIPVPAGFPTSTFSIPDALPLSYTIGNPSEC 181
+AGS+G APA++ V +GQ +PVPA + IP+ + IG+PSEC
Sbjct: 444 IAGSLGVAPAVNGSAVNQQAISLPVVGQPAVPVPA---VTAPVIPNMA--AEFIGSPSEC 498
Query: 182 LLLKNMFDPKLEPEPDFD 235
LLLKNMFDP +E +PDFD
Sbjct: 499 LLLKNMFDPAMETDPDFD 516
>ref|XP_006409370.1| hypothetical protein EUTSA_v10022624mg [Eutrema salsugineum]
gi|557110532|gb|ESQ50823.1| hypothetical protein
EUTSA_v10022624mg [Eutrema salsugineum]
Length = 566
Score = 60.8 bits (146), Expect = 2e-07
Identities = 39/80 (48%), Positives = 45/80 (56%), Gaps = 5/80 (6%)
Frame = +2
Query: 11 SDGMGVAGSV-GAAPAISPPFVPIGQIPIPVPAGFP----TSTFSIPDALPLSYTIGNPS 175
S G+ AGS+ GAA ISP P+ Q P AG ++P AL +G PS
Sbjct: 415 STGLTAAGSIHGAASTISPLVAPLVQGGFPPVAGLAGVGNVPGVNMPAALD---PVGVPS 471
Query: 176 ECLLLKNMFDPKLEPEPDFD 235
ECLLLKNMFDP E EPDFD
Sbjct: 472 ECLLLKNMFDPSTETEPDFD 491
>gb|EMJ00262.1| hypothetical protein PRUPE_ppa018661mg, partial [Prunus persica]
Length = 349
Score = 60.5 bits (145), Expect = 2e-07
Identities = 36/67 (53%), Positives = 42/67 (62%), Gaps = 1/67 (1%)
Frame = +2
Query: 38 VGAAPAISPPFVPIGQIPIPVPAGFPTSTFSIP-DALPLSYTIGNPSECLLLKNMFDPKL 214
+GAA ISP PI +P AG + IP ALP TIG PSECLLLKNMF+P +
Sbjct: 230 LGAAAVISPLVPPI--TAVPGIAGLGVAGLQIPTSALPSIDTIGVPSECLLLKNMFNPAV 287
Query: 215 EPEPDFD 235
E EP+FD
Sbjct: 288 ETEPNFD 294
>gb|ESW09673.1| hypothetical protein PHAVU_009G146500g [Phaseolus vulgaris]
Length = 592
Score = 60.1 bits (144), Expect = 3e-07
Identities = 33/75 (44%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Frame = +2
Query: 14 DGMGVAGSVGAAPAISPPFVPIGQIPIPVPAGFPTSTFSIPDA-LPLSYTIGNPSECLLL 190
D G+A S+G +PI P P ST + P+ +GNPSECLLL
Sbjct: 442 DRSGIAASIGLPVGNGSAPAQQAMMPIGNPGVIPASTVPMQVVPTPVIEPVGNPSECLLL 501
Query: 191 KNMFDPKLEPEPDFD 235
KNMFDP E EPDFD
Sbjct: 502 KNMFDPNTETEPDFD 516
>gb|ESW09672.1| hypothetical protein PHAVU_009G146500g [Phaseolus vulgaris]
Length = 590
Score = 60.1 bits (144), Expect = 3e-07
Identities = 33/75 (44%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Frame = +2
Query: 14 DGMGVAGSVGAAPAISPPFVPIGQIPIPVPAGFPTSTFSIPDA-LPLSYTIGNPSECLLL 190
D G+A S+G +PI P P ST + P+ +GNPSECLLL
Sbjct: 442 DRSGIAASIGLPVGNGSAPAQQAMMPIGNPGVIPASTVPMQVVPTPVIEPVGNPSECLLL 501
Query: 191 KNMFDPKLEPEPDFD 235
KNMFDP E EPDFD
Sbjct: 502 KNMFDPNTETEPDFD 516
>gb|ESW09671.1| hypothetical protein PHAVU_009G146500g [Phaseolus vulgaris]
Length = 591
Score = 60.1 bits (144), Expect = 3e-07
Identities = 33/75 (44%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Frame = +2
Query: 14 DGMGVAGSVGAAPAISPPFVPIGQIPIPVPAGFPTSTFSIPDA-LPLSYTIGNPSECLLL 190
D G+A S+G +PI P P ST + P+ +GNPSECLLL
Sbjct: 442 DRSGIAASIGLPVGNGSAPAQQAMMPIGNPGVIPASTVPMQVVPTPVIEPVGNPSECLLL 501
Query: 191 KNMFDPKLEPEPDFD 235
KNMFDP E EPDFD
Sbjct: 502 KNMFDPNTETEPDFD 516
>ref|XP_006829172.1| hypothetical protein AMTR_s00001p00270600 [Amborella trichopoda]
gi|548834151|gb|ERM96588.1| hypothetical protein
AMTR_s00001p00270600 [Amborella trichopoda]
Length = 641
Score = 59.3 bits (142), Expect = 5e-07
Identities = 36/72 (50%), Positives = 44/72 (61%), Gaps = 3/72 (4%)
Frame = +2
Query: 29 AGSVGAAPAISPPFVPIGQIPIPVPAGFPTSTFSIPDALPLS---YTIGNPSECLLLKNM 199
A +G+AP +SP +GQ P AG S+P A ++ +IG PSECLLLKNM
Sbjct: 503 ANLLGSAPLVSPLISTLGQ---PSVAGL-----SLPIAAAIASPVISIGVPSECLLLKNM 554
Query: 200 FDPKLEPEPDFD 235
FDPK E EPDFD
Sbjct: 555 FDPKAETEPDFD 566
>ref|XP_002465838.1| hypothetical protein SORBIDRAFT_01g046740 [Sorghum bicolor]
gi|241919692|gb|EER92836.1| hypothetical protein
SORBIDRAFT_01g046740 [Sorghum bicolor]
Length = 541
Score = 59.3 bits (142), Expect = 5e-07
Identities = 38/79 (48%), Positives = 44/79 (55%), Gaps = 6/79 (7%)
Frame = +2
Query: 17 GMGVAGSVGAAPAISPPFVPIGQIPIPVPAGFPT--STFSIPDA-LPL---SYTIGNPSE 178
GMG AG + P + P +G P P PT SIP A LP+ S + PSE
Sbjct: 392 GMGTAGL--STPVVIPTVSVLGAAPAAAPLLHPTVPGLGSIPGATLPITTPSIDLAPPSE 449
Query: 179 CLLLKNMFDPKLEPEPDFD 235
CLLLKNMFDP LE +PDFD
Sbjct: 450 CLLLKNMFDPALETDPDFD 468
>ref|XP_003630170.1| RNA-binding protein [Medicago truncatula]
gi|355524192|gb|AET04646.1| RNA-binding protein
[Medicago truncatula]
Length = 567
Score = 59.3 bits (142), Expect = 5e-07
Identities = 37/70 (52%), Positives = 38/70 (54%)
Frame = +2
Query: 26 VAGSVGAAPAISPPFVPIGQIPIPVPAGFPTSTFSIPDALPLSYTIGNPSECLLLKNMFD 205
V GSV A S PF G IP V PT P A P +G PSECLLLKNMFD
Sbjct: 430 VNGSVPVQQAFSMPFGNPGVIPASV---LPTQVMPTPVAEP----VGIPSECLLLKNMFD 482
Query: 206 PKLEPEPDFD 235
P E EPDFD
Sbjct: 483 PSTEIEPDFD 492