BLASTX nr result
ID: Catharanthus22_contig00037053
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Catharanthus22_contig00037053
(717 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_006361364.1| PREDICTED: uncharacterized protein LOC102596... 43 9e-13
gb|AAT40504.2| Polyprotein, putative [Solanum demissum] 48 9e-11
gb|AAT38756.2| Putative methyltransferase family protein [Solanu... 44 6e-10
gb|AEJ72569.1| putative reverse transcriptase family member [Mal... 39 2e-09
emb|CCH50976.1| T4.15 [Malus x robusta] 41 3e-09
ref|WP_009187176.1| hypothetical protein [Cecembia lonarensis] g... 40 4e-09
ref|WP_008409321.1| hypothetical protein [Bacillus isronensis] g... 40 3e-08
emb|CBL94163.1| putative RNA-directed DNA polymerase (Reverse tr... 40 9e-08
ref|NP_001183823.1| uncharacterized protein LOC100502416 [Zea ma... 42 5e-07
emb|CBL94165.1| putative reverse transcriptase family member [Ma... 38 5e-07
gb|ABB00038.1| reverse transcriptase family member [Glycine max] 50 3e-06
>ref|XP_006361364.1| PREDICTED: uncharacterized protein LOC102596609 [Solanum tuberosum]
Length = 278
Score = 42.7 bits (99), Expect(4) = 9e-13
Identities = 20/40 (50%), Positives = 27/40 (67%)
Frame = -2
Query: 431 RGRGRPRKIWLDVIKSDMALPDLDKSMALDRKKGRACIHV 312
RGRGRP+K W +VI+ D+A + + M LDRK R+ I V
Sbjct: 237 RGRGRPKKYWGEVIRQDLAQLHITEDMTLDRKAWRSRIKV 276
Score = 38.9 bits (89), Expect(4) = 9e-13
Identities = 15/30 (50%), Positives = 22/30 (73%)
Frame = -3
Query: 541 IEDKMRENCLHWFRHIKRRLSEASIRRTEG 452
+ DK+RE L WF H++RR ++A +RR EG
Sbjct: 200 VVDKLREARLRWFGHVRRRCADAPVRRCEG 229
Score = 29.6 bits (65), Expect(4) = 9e-13
Identities = 13/20 (65%), Positives = 15/20 (75%)
Frame = -2
Query: 665 VKMCPIQKMHVEEMRML*WI 606
VK +QKMHV EMRML W+
Sbjct: 158 VKNSHVQKMHVAEMRMLRWM 177
Score = 27.3 bits (59), Expect(4) = 9e-13
Identities = 10/15 (66%), Positives = 14/15 (93%)
Frame = -1
Query: 594 RKDKVRNEIIQKKVG 550
R DK+RNE+I++KVG
Sbjct: 182 RSDKIRNEVIREKVG 196
>gb|AAT40504.2| Polyprotein, putative [Solanum demissum]
Length = 868
Score = 47.8 bits (112), Expect(3) = 9e-11
Identities = 21/42 (50%), Positives = 30/42 (71%)
Frame = -2
Query: 431 RGRGRPRKIWLDVIKSDMALPDLDKSMALDRKKGRACIHVHD 306
RGRGRP+K W +VI+ D+A+ + + M LDRK+ R+ I V D
Sbjct: 650 RGRGRPKKYWEEVIRQDLAMLHITEDMTLDRKEWRSRIKVED 691
Score = 37.4 bits (85), Expect(3) = 9e-11
Identities = 15/29 (51%), Positives = 21/29 (72%)
Frame = -3
Query: 541 IEDKMRENCLHWFRHIKRRLSEASIRRTE 455
+ DK+RE L WF H+KRR ++A +RR E
Sbjct: 613 VVDKLREARLRWFGHVKRRSADAPVRRCE 641
Score = 27.3 bits (59), Expect(3) = 9e-11
Identities = 10/15 (66%), Positives = 14/15 (93%)
Frame = -1
Query: 594 RKDKVRNEIIQKKVG 550
R DK+RNE+I++KVG
Sbjct: 595 RSDKIRNEVIREKVG 609
>gb|AAT38756.2| Putative methyltransferase family protein [Solanum demissum]
Length = 828
Score = 44.3 bits (103), Expect(3) = 6e-10
Identities = 19/38 (50%), Positives = 28/38 (73%)
Frame = -2
Query: 431 RGRGRPRKIWLDVIKSDMALPDLDKSMALDRKKGRACI 318
RGRGRP+K W +VI+ D+A+ + + M LDRK+ R+ I
Sbjct: 67 RGRGRPKKYWEEVIRQDLAMLHITEDMTLDRKEWRSRI 104
Score = 38.1 bits (87), Expect(3) = 6e-10
Identities = 15/29 (51%), Positives = 22/29 (75%)
Frame = -3
Query: 541 IEDKMRENCLHWFRHIKRRLSEASIRRTE 455
+ DK+RE L WF H+KRR ++A++RR E
Sbjct: 30 VVDKLREARLRWFGHVKRRSADAAVRRCE 58
Score = 27.3 bits (59), Expect(3) = 6e-10
Identities = 10/15 (66%), Positives = 14/15 (93%)
Frame = -1
Query: 594 RKDKVRNEIIQKKVG 550
R DK+RNE+I++KVG
Sbjct: 12 RSDKIRNEVIREKVG 26
>gb|AEJ72569.1| putative reverse transcriptase family member [Malus domestica]
Length = 212
Score = 38.5 bits (88), Expect(4) = 2e-09
Identities = 18/42 (42%), Positives = 25/42 (59%)
Frame = -2
Query: 431 RGRGRPRKIWLDVIKSDMALPDLDKSMALDRKKGRACIHVHD 306
RGRGRPRK + ++ D+ DL K M DR + + IH+ D
Sbjct: 168 RGRGRPRKTLEETLRKDLGYLDLTKDMTQDRAQWCSKIHIAD 209
Score = 37.4 bits (85), Expect(4) = 2e-09
Identities = 21/45 (46%), Positives = 27/45 (60%)
Frame = -3
Query: 541 IEDKMRENCLHWFRHIKRRLSEASIRRTEGWRNKSL*EVEGGQGR 407
IE MREN L WF H++RR + A IRR + EV+G +GR
Sbjct: 131 IEGNMRENRLRWFGHVQRRPTYAPIRRCDYET-----EVQGRRGR 170
Score = 25.8 bits (55), Expect(4) = 2e-09
Identities = 11/15 (73%), Positives = 13/15 (86%)
Frame = -1
Query: 594 RKDKVRNEIIQKKVG 550
RKDK+RNE I+ KVG
Sbjct: 113 RKDKIRNEDIRGKVG 127
Score = 25.4 bits (54), Expect(4) = 2e-09
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = -2
Query: 677 ESRAVKMCPIQKMHVEEMRML*WI 606
E AVK + KM V EMRML W+
Sbjct: 85 ECWAVKYQHVHKMGVAEMRMLRWM 108
>emb|CCH50976.1| T4.15 [Malus x robusta]
Length = 986
Score = 41.2 bits (95), Expect(3) = 3e-09
Identities = 19/42 (45%), Positives = 26/42 (61%)
Frame = -2
Query: 431 RGRGRPRKIWLDVIKSDMALPDLDKSMALDRKKGRACIHVHD 306
RGRGRPRK + ++ D+ DL K M DR + R+ IH+ D
Sbjct: 942 RGRGRPRKTLEETLRKDLEYLDLTKDMTQDRAQWRSKIHIAD 983
Score = 40.0 bits (92), Expect(3) = 3e-09
Identities = 21/45 (46%), Positives = 29/45 (64%)
Frame = -3
Query: 541 IEDKMRENCLHWFRHIKRRLSEASIRRTEGWRNKSL*EVEGGQGR 407
I+ KMREN L WF H++RR ++A IRR + EV+G +GR
Sbjct: 905 IQGKMRENQLRWFGHVQRRPTDAPIRRCDYGT-----EVQGRRGR 944
Score = 25.8 bits (55), Expect(3) = 3e-09
Identities = 11/15 (73%), Positives = 13/15 (86%)
Frame = -1
Query: 594 RKDKVRNEIIQKKVG 550
RKDK+RNE I+ KVG
Sbjct: 887 RKDKIRNEDIRGKVG 901
>ref|WP_009187176.1| hypothetical protein [Cecembia lonarensis]
gi|405551390|gb|EKB47241.1| hypothetical protein
B879_04163 [Cecembia lonarensis LW9]
Length = 133
Score = 40.0 bits (92), Expect(3) = 4e-09
Identities = 21/45 (46%), Positives = 28/45 (62%)
Frame = -3
Query: 541 IEDKMRENCLHWFRHIKRRLSEASIRRTEGWRNKSL*EVEGGQGR 407
IE KMREN L WF H++RR ++A +RR + EV G +GR
Sbjct: 52 IEGKMRENRLRWFGHVQRRPTDAPVRRCDYGT-----EVRGRRGR 91
Score = 39.7 bits (91), Expect(3) = 4e-09
Identities = 18/42 (42%), Positives = 26/42 (61%)
Frame = -2
Query: 431 RGRGRPRKIWLDVIKSDMALPDLDKSMALDRKKGRACIHVHD 306
RGRGRPRK + ++ D+ DL + M DR + R+ IH+ D
Sbjct: 89 RGRGRPRKTLEETLRKDLEYLDLTEDMTQDRAQWRSRIHIAD 130
Score = 27.3 bits (59), Expect(3) = 4e-09
Identities = 12/15 (80%), Positives = 13/15 (86%)
Frame = -1
Query: 594 RKDKVRNEIIQKKVG 550
RKDK+RNE IQ KVG
Sbjct: 34 RKDKIRNEDIQGKVG 48
>ref|WP_008409321.1| hypothetical protein [Bacillus isronensis]
gi|405383715|gb|EKB43273.1| hypothetical protein
B857_03969 [Bacillus isronensis B3W22]
Length = 109
Score = 39.7 bits (91), Expect(3) = 3e-08
Identities = 18/42 (42%), Positives = 26/42 (61%)
Frame = -2
Query: 431 RGRGRPRKIWLDVIKSDMALPDLDKSMALDRKKGRACIHVHD 306
RGRGRPRK + ++ D+ DL + M DR + R+ IH+ D
Sbjct: 65 RGRGRPRKTLEETLRKDLEYLDLTEDMTQDRAQWRSKIHIAD 106
Score = 38.9 bits (89), Expect(3) = 3e-08
Identities = 21/45 (46%), Positives = 28/45 (62%)
Frame = -3
Query: 541 IEDKMRENCLHWFRHIKRRLSEASIRRTEGWRNKSL*EVEGGQGR 407
IE KMREN L WF H++R ++A IRR + EV+G +GR
Sbjct: 28 IEGKMRENRLRWFGHVQRMPTDAPIRRCDYGT-----EVQGRRGR 67
Score = 25.8 bits (55), Expect(3) = 3e-08
Identities = 11/15 (73%), Positives = 13/15 (86%)
Frame = -1
Query: 594 RKDKVRNEIIQKKVG 550
RKDK+RNE I+ KVG
Sbjct: 10 RKDKIRNEDIRGKVG 24
>emb|CBL94163.1| putative RNA-directed DNA polymerase (Reverse transcriptase) [Malus
domestica]
Length = 622
Score = 40.0 bits (92), Expect(3) = 9e-08
Identities = 21/45 (46%), Positives = 29/45 (64%)
Frame = -3
Query: 541 IEDKMRENCLHWFRHIKRRLSEASIRRTEGWRNKSL*EVEGGQGR 407
IE KMREN L WF H++RR ++A IRR + +V+G +GR
Sbjct: 541 IEGKMRENWLRWFGHVQRRPTDAPIRRCDYGT-----KVQGRKGR 580
Score = 38.1 bits (87), Expect(3) = 9e-08
Identities = 18/42 (42%), Positives = 26/42 (61%)
Frame = -2
Query: 431 RGRGRPRKIWLDVIKSDMALPDLDKSMALDRKKGRACIHVHD 306
+GRGRPRK + ++ D+ DL + M DR + R+ IHV D
Sbjct: 578 KGRGRPRKTLEETLRKDLEYLDLMEDMTQDRAQWRSKIHVAD 619
Score = 23.9 bits (50), Expect(3) = 9e-08
Identities = 10/14 (71%), Positives = 12/14 (85%)
Frame = -1
Query: 591 KDKVRNEIIQKKVG 550
KDK+RNE I+ KVG
Sbjct: 524 KDKIRNEDIRGKVG 537
>ref|NP_001183823.1| uncharacterized protein LOC100502416 [Zea mays]
gi|238014750|gb|ACR38410.1| unknown [Zea mays]
Length = 215
Score = 42.4 bits (98), Expect(4) = 5e-07
Identities = 18/40 (45%), Positives = 25/40 (62%)
Frame = -2
Query: 431 RGRGRPRKIWLDVIKSDMALPDLDKSMALDRKKGRACIHV 312
RGRGRP W + +K D+ +DK +A+DRK + IHV
Sbjct: 173 RGRGRPTLTWTEAVKRDLKEWKIDKELAVDRKGWKCAIHV 212
Score = 31.2 bits (69), Expect(4) = 5e-07
Identities = 20/50 (40%), Positives = 27/50 (54%), Gaps = 5/50 (10%)
Frame = -3
Query: 541 IEDKMRENCLHWFRHIKRRLSEAS-----IRRTEGWRNKSL*EVEGGQGR 407
IE+K+ ++ L WF HI+RR EA IRR E V+ G+GR
Sbjct: 136 IEEKLMQHRLRWFGHIQRRSDEAPVHIGIIRRPE--------NVKRGRGR 177
Score = 22.7 bits (47), Expect(4) = 5e-07
Identities = 8/15 (53%), Positives = 14/15 (93%)
Frame = -1
Query: 594 RKDKVRNEIIQKKVG 550
R+D+VRN+ I+++VG
Sbjct: 118 RRDRVRNDDIRERVG 132
Score = 22.3 bits (46), Expect(4) = 5e-07
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = -2
Query: 650 IQKMHVEEMRML*WI 606
+Q++ V EMRML WI
Sbjct: 99 VQQLCVAEMRMLRWI 113
>emb|CBL94165.1| putative reverse transcriptase family member [Malus domestica]
Length = 163
Score = 37.7 bits (86), Expect(4) = 5e-07
Identities = 17/42 (40%), Positives = 26/42 (61%)
Frame = -2
Query: 431 RGRGRPRKIWLDVIKSDMALPDLDKSMALDRKKGRACIHVHD 306
RGRGRPRK + ++ D+ DL + M +R + R+ IH+ D
Sbjct: 120 RGRGRPRKTLEETLRKDLEYLDLTEDMTQNRAQWRSRIHIAD 161
Score = 36.2 bits (82), Expect(4) = 5e-07
Identities = 19/45 (42%), Positives = 26/45 (57%)
Frame = -3
Query: 541 IEDKMRENCLHWFRHIKRRLSEASIRRTEGWRNKSL*EVEGGQGR 407
+E KMREN L WF H++R ++A +RR EV G +GR
Sbjct: 83 VEGKMRENRLRWFGHVQRMPTDAPVRRCNYET-----EVRGRRGR 122
Score = 24.3 bits (51), Expect(4) = 5e-07
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = -1
Query: 603 RQKRKDKVRNEIIQKKVG 550
R RKDK+ NE I+ KVG
Sbjct: 62 RHTRKDKIVNEDIRGKVG 79
Score = 20.4 bits (41), Expect(4) = 5e-07
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = -2
Query: 677 ESRAVKMCPIQKMHVEEMRML 615
E AVK + KM V E+RML
Sbjct: 37 ECWAVKHQHVHKMGVAEIRML 57
>gb|ABB00038.1| reverse transcriptase family member [Glycine max]
Length = 377
Score = 50.4 bits (119), Expect(3) = 3e-06
Identities = 25/49 (51%), Positives = 33/49 (67%)
Frame = -2
Query: 452 VEE*ESIRGRGRPRKIWLDVIKSDMALPDLDKSMALDRKKGRACIHVHD 306
+E ++IRGRGRP+K +VIK D+ + LD+SM LDR R IHV D
Sbjct: 327 MERRQTIRGRGRPKKTIREVIKKDLEINGLDRSMVLDRTLWRKLIHVAD 375
Score = 25.0 bits (53), Expect(3) = 3e-06
Identities = 9/15 (60%), Positives = 14/15 (93%)
Frame = -1
Query: 594 RKDKVRNEIIQKKVG 550
R+DK+RNE I+++VG
Sbjct: 279 RQDKIRNEAIRERVG 293
Score = 21.6 bits (44), Expect(3) = 3e-06
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = -2
Query: 677 ESRAVKMCPIQKMHVEEMRML*WI 606
E AVK K+ V EMRML W+
Sbjct: 251 ECWAVKSQHENKVGVAEMRMLRWM 274