BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Catharanthus22_contig00036860
         (798 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAC26250.1| contains similarity to reverse transcriptase (Pfa...   407   e-111
gb|ADB85430.1| putative retrotransposon protein [Phyllostachys e...   407   e-111
dbj|BAA22288.1| polyprotein [Oryza australiensis]                     407   e-111
gb|AAV85747.1| Integrase core domain, putative [Oryza sativa Jap...   406   e-111
gb|ABF97047.1| retrotransposon protein, putative, Ty1-copia subc...   401   e-109
gb|AAP44605.1| putative polyprotein [Oryza sativa Japonica Group]     401   e-109
gb|AAX94813.1| retrotransposon protein, putative, Ty1-copia sub-...   399   e-109
gb|ADB85429.1| putative retrotransposon protein [Phyllostachys e...   397   e-108
gb|ABF97213.1| retrotransposon protein, putative, Ty1-copia subc...   394   e-107
gb|AAS01945.1| putative polyprotein [Oryza sativa Japonica Group]     394   e-107
gb|ABF97078.1| retrotransposon protein, putative, Ty1-copia subc...   390   e-106
gb|AAK52163.1|AC084831_17 putative polyprotein [Oryza sativa Jap...   390   e-106
emb|CAD39797.2| OSJNBa0071G03.10 [Oryza sativa Japonica Group]        372   e-101
gb|ABA98367.2| retrotransposon protein, putative, Ty1-copia subc...   372   e-100
gb|ABA97342.2| retrotransposon protein, putative, Ty1-copia subc...   367   3e-99
emb|CAE03845.1| OSJNBb0089K06.4 [Oryza sativa Japonica Group]         359   7e-97
gb|ADJ18449.1| gag/pol protein [Bryonia dioica]                       336   5e-90
emb|CAN69397.1| hypothetical protein VITISV_021035 [Vitis vinifera]   330   3e-88
gb|ABF97393.1| retrotransposon protein, putative, Ty1-copia subc...   315   9e-84
gb|AAR06328.1| putative polyprotein [Oryza sativa Japonica Group]     315   9e-84

>gb|AAC26250.1| contains similarity to reverse transcriptase (Pfam: rvt.hmm, score
            19.29) [Arabidopsis thaliana] gi|7267136|emb|CAB80804.1|
            putative retrotransposon protein [Arabidopsis thaliana]
          Length = 964

 Score =  407 bits (1047), Expect = e-111
 Identities = 200/265 (75%), Positives = 229/265 (86%)
 Frame = -2

Query: 797  VYMTQPEGFIHLLNSSKVCKLQRSIYGLKQASRSWNLRFDEAIKEFNFIKNDDEPCVYKR 618
            VYMTQPEGF     + KVCKL RSIYGLKQASRSWNLRF+EAIKEF+FI+N++EPCVYK+
Sbjct: 567  VYMTQPEGFTVPEAARKVCKLHRSIYGLKQASRSWNLRFNEAIKEFDFIRNEEEPCVYKK 626

Query: 617  VTENAVVFLVLYVDDILLIGNDILTFQSVKTWLGKCFSMKDLGEAAYILGIRISRDRSKN 438
             + +AV FLVLYVDDILL+GNDI   QSVKTWLG CFSMKD+GEAAYILGIRI RDR   
Sbjct: 627  TSGSAVAFLVLYVDDILLLGNDIPLLQSVKTWLGSCFSMKDMGEAAYILGIRIYRDRLNK 686

Query: 437  LIGLSQNGYIDKVLKRFSMQDSKRGFLPMSHGVKLSKSQSPTTREDTERMSKIPYASAIG 258
            +IGLSQ+ YIDKVL RF+M DSK+GF+PMSHG+ LSK+Q P+T ++ ERMSKIPYASAIG
Sbjct: 687  IIGLSQDTYIDKVLHRFNMHDSKKGFIPMSHGITLSKTQCPSTHDERERMSKIPYASAIG 746

Query: 257  SIMYAMLCTRPDVSYALSMTSRFQSNPGEPHWTAVKNILKYLRRTKEMFLIYGGQDGELV 78
            SIMYAML TRPDV+ ALSMTSR+QS+PGE HW  V+NI KYLRRTK+ FL+YGG + ELV
Sbjct: 747  SIMYAMLYTRPDVACALSMTSRYQSDPGESHWIVVRNIFKYLRRTKDKFLVYGGSE-ELV 805

Query: 77   VNGYTDASFQTDVDDFRSQSGFVFC 3
            V+GYTDASFQTD DDFRSQSGF FC
Sbjct: 806  VSGYTDASFQTDKDDFRSQSGFFFC 830


>gb|ADB85430.1| putative retrotransposon protein [Phyllostachys edulis]
          Length = 896

 Score =  407 bits (1046), Expect = e-111
 Identities = 200/264 (75%), Positives = 232/264 (87%)
 Frame = -2

Query: 797  VYMTQPEGFIHLLNSSKVCKLQRSIYGLKQASRSWNLRFDEAIKEFNFIKNDDEPCVYKR 618
            VYMTQPEGF+   N+SKVCKLQ+SIYGLKQASRSWN+RFDE IK F FIKN +EPCVY +
Sbjct: 500  VYMTQPEGFVDPNNASKVCKLQKSIYGLKQASRSWNIRFDEEIKRFGFIKNKEEPCVYMK 559

Query: 617  VTENAVVFLVLYVDDILLIGNDILTFQSVKTWLGKCFSMKDLGEAAYILGIRISRDRSKN 438
            V+ + +V L+LYVDDILL+GNDI   +SVK+ L K FSMKDLG+AAYILGIRI RDRSK 
Sbjct: 560  VSGSTLVILILYVDDILLVGNDIPMLESVKSSLRKSFSMKDLGDAAYILGIRIYRDRSKR 619

Query: 437  LIGLSQNGYIDKVLKRFSMQDSKRGFLPMSHGVKLSKSQSPTTREDTERMSKIPYASAIG 258
            LIGLSQ  YIDKVL RF+MQ+SKRGFLPM+HG+ LSK+Q PTT ++ ++MS IPYASAIG
Sbjct: 620  LIGLSQEMYIDKVLNRFNMQNSKRGFLPMAHGINLSKNQCPTTTDERDKMSDIPYASAIG 679

Query: 257  SIMYAMLCTRPDVSYALSMTSRFQSNPGEPHWTAVKNILKYLRRTKEMFLIYGGQDGELV 78
            SIMYAM+CTRPDVSYALS+TSR+Q++P E HWTAVKNILKYLRRTK++FL+YGG D ELV
Sbjct: 680  SIMYAMICTRPDVSYALSVTSRYQADPSEGHWTAVKNILKYLRRTKDVFLVYGG-DEELV 738

Query: 77   VNGYTDASFQTDVDDFRSQSGFVF 6
            VNGYTDASFQTD DD+RSQSGFVF
Sbjct: 739  VNGYTDASFQTDKDDYRSQSGFVF 762


>dbj|BAA22288.1| polyprotein [Oryza australiensis]
          Length = 1317

 Score =  407 bits (1045), Expect = e-111
 Identities = 198/265 (74%), Positives = 231/265 (87%)
 Frame = -2

Query: 797  VYMTQPEGFIHLLNSSKVCKLQRSIYGLKQASRSWNLRFDEAIKEFNFIKNDDEPCVYKR 618
            VYM QP+GF+   +  K+CKLQ+SIYGLKQASRSWN+RFDE IK F FIKN++E CVYK+
Sbjct: 920  VYMIQPQGFVDPESPGKICKLQKSIYGLKQASRSWNIRFDEVIKGFGFIKNEEEACVYKK 979

Query: 617  VTENAVVFLVLYVDDILLIGNDILTFQSVKTWLGKCFSMKDLGEAAYILGIRISRDRSKN 438
            V+ +A+VFL+LYVDDILLIGNDI   +SVK+ L   FSMKDLGEAAYILGIRI RDRSK 
Sbjct: 980  VSGSAIVFLILYVDDILLIGNDIPMLESVKSSLKNSFSMKDLGEAAYILGIRIYRDRSKR 1039

Query: 437  LIGLSQNGYIDKVLKRFSMQDSKRGFLPMSHGVKLSKSQSPTTREDTERMSKIPYASAIG 258
            LIGLSQ+ YIDKVLKRF+M DSK+GFLPMSHG+ LSK+Q P T ++  +M  +PYASAIG
Sbjct: 1040 LIGLSQSTYIDKVLKRFNMHDSKKGFLPMSHGINLSKNQCPQTHDERNKMGMVPYASAIG 1099

Query: 257  SIMYAMLCTRPDVSYALSMTSRFQSNPGEPHWTAVKNILKYLRRTKEMFLIYGGQDGELV 78
            SIMYAMLCTRPDVSYALS TSR+QS+PGE HWTAVKNILKYLRRTK+MFL+YGG++ +LV
Sbjct: 1100 SIMYAMLCTRPDVSYALSATSRYQSDPGEGHWTAVKNILKYLRRTKDMFLVYGGEE-DLV 1158

Query: 77   VNGYTDASFQTDVDDFRSQSGFVFC 3
            V+GYTDASFQTD DD+RSQSGFVFC
Sbjct: 1159 VSGYTDASFQTDKDDYRSQSGFVFC 1183


>gb|AAV85747.1| Integrase core domain, putative [Oryza sativa Japonica Group]
            gi|62701883|gb|AAX92956.1| retrotransposon protein,
            putative, Ty1-copia sub-class [Oryza sativa Japonica
            Group] gi|108864259|gb|ABA92827.2| retrotransposon
            protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1184

 Score =  406 bits (1044), Expect = e-111
 Identities = 199/265 (75%), Positives = 229/265 (86%)
 Frame = -2

Query: 797  VYMTQPEGFIHLLNSSKVCKLQRSIYGLKQASRSWNLRFDEAIKEFNFIKNDDEPCVYKR 618
            VYMTQP+GF    ++ K+CKL +SIYGLKQASRSWN+RFDE +K   F++N++EPCVYK+
Sbjct: 791  VYMTQPKGFDDPQSAKKICKLHQSIYGLKQASRSWNIRFDEVVKALGFVRNEEEPCVYKK 850

Query: 617  VTENAVVFLVLYVDDILLIGNDILTFQSVKTWLGKCFSMKDLGEAAYILGIRISRDRSKN 438
            ++ +A+VFL+LYVDDILLIGNDI   +SVKT L   FSMKDLGEAAYILGIRI RDRSK 
Sbjct: 851  ISGSALVFLILYVDDILLIGNDISMLESVKTSLKNSFSMKDLGEAAYILGIRIYRDRSKR 910

Query: 437  LIGLSQNGYIDKVLKRFSMQDSKRGFLPMSHGVKLSKSQSPTTREDTERMSKIPYASAIG 258
            LIGLSQ+ YIDKVLKRF+MQDSK+GFLPMSHG+ L K+Q P T ++  +MS IPYASAIG
Sbjct: 911  LIGLSQSTYIDKVLKRFNMQDSKKGFLPMSHGINLGKNQCPQTTDERNKMSVIPYASAIG 970

Query: 257  SIMYAMLCTRPDVSYALSMTSRFQSNPGEPHWTAVKNILKYLRRTKEMFLIYGGQDGELV 78
            SIMYAMLCTRPDVSYALS TSR+QS+PGE HW AVKNILKYLRRTK+MFL YGGQ+ ELV
Sbjct: 971  SIMYAMLCTRPDVSYALSATSRYQSDPGESHWIAVKNILKYLRRTKDMFLAYGGQE-ELV 1029

Query: 77   VNGYTDASFQTDVDDFRSQSGFVFC 3
            VNGYTDASFQ D DDFRSQSGFVFC
Sbjct: 1030 VNGYTDASFQIDKDDFRSQSGFVFC 1054


>gb|ABF97047.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1248

 Score =  401 bits (1030), Expect = e-109
 Identities = 198/265 (74%), Positives = 229/265 (86%)
 Frame = -2

Query: 797  VYMTQPEGFIHLLNSSKVCKLQRSIYGLKQASRSWNLRFDEAIKEFNFIKNDDEPCVYKR 618
            VYMTQP+GF+   ++ K+CKLQ+SIY LKQASRSWN+RFDE +K   F+KN++EPCVYK+
Sbjct: 869  VYMTQPKGFVDPQSAKKICKLQKSIYRLKQASRSWNIRFDEVVKALGFVKNEEEPCVYKK 928

Query: 617  VTENAVVFLVLYVDDILLIGNDILTFQSVKTWLGKCFSMKDLGEAAYILGIRISRDRSKN 438
            ++ +A+VFL+LYVDDILLIGNDI   +SVKT L   FSMKDLGEAAYILGIRI RDRSK 
Sbjct: 929  ISGSALVFLILYVDDILLIGNDIPMLESVKTSLKYSFSMKDLGEAAYILGIRIYRDRSKR 988

Query: 437  LIGLSQNGYIDKVLKRFSMQDSKRGFLPMSHGVKLSKSQSPTTREDTERMSKIPYASAIG 258
            LIGLSQ+ YIDKVLKRF+MQDSK+GFLPMSHG+ L K+Q P T ++  +MS IPYASAIG
Sbjct: 989  LIGLSQSTYIDKVLKRFNMQDSKKGFLPMSHGINLGKNQCPQTTDERNKMSVIPYASAIG 1048

Query: 257  SIMYAMLCTRPDVSYALSMTSRFQSNPGEPHWTAVKNILKYLRRTKEMFLIYGGQDGELV 78
            SIMYAMLCTR DVSYALS TSR+QS+ GE HW AVKNILKYLRRTK+MFL+YG Q+ ELV
Sbjct: 1049 SIMYAMLCTRLDVSYALSATSRYQSDLGESHWIAVKNILKYLRRTKDMFLVYGRQE-ELV 1107

Query: 77   VNGYTDASFQTDVDDFRSQSGFVFC 3
            VNGYTDASFQTD DDFRSQSGFVFC
Sbjct: 1108 VNGYTDASFQTDKDDFRSQSGFVFC 1132


>gb|AAP44605.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1161

 Score =  401 bits (1030), Expect = e-109
 Identities = 198/265 (74%), Positives = 229/265 (86%)
 Frame = -2

Query: 797  VYMTQPEGFIHLLNSSKVCKLQRSIYGLKQASRSWNLRFDEAIKEFNFIKNDDEPCVYKR 618
            VYMTQP+GF+   ++ K+CKLQ+SIY LKQASRSWN+RFDE +K   F+KN++EPCVYK+
Sbjct: 782  VYMTQPKGFVDPQSAKKICKLQKSIYRLKQASRSWNIRFDEVVKALGFVKNEEEPCVYKK 841

Query: 617  VTENAVVFLVLYVDDILLIGNDILTFQSVKTWLGKCFSMKDLGEAAYILGIRISRDRSKN 438
            ++ +A+VFL+LYVDDILLIGNDI   +SVKT L   FSMKDLGEAAYILGIRI RDRSK 
Sbjct: 842  ISGSALVFLILYVDDILLIGNDIPMLESVKTSLKYSFSMKDLGEAAYILGIRIYRDRSKR 901

Query: 437  LIGLSQNGYIDKVLKRFSMQDSKRGFLPMSHGVKLSKSQSPTTREDTERMSKIPYASAIG 258
            LIGLSQ+ YIDKVLKRF+MQDSK+GFLPMSHG+ L K+Q P T ++  +MS IPYASAIG
Sbjct: 902  LIGLSQSTYIDKVLKRFNMQDSKKGFLPMSHGINLGKNQCPQTTDERNKMSVIPYASAIG 961

Query: 257  SIMYAMLCTRPDVSYALSMTSRFQSNPGEPHWTAVKNILKYLRRTKEMFLIYGGQDGELV 78
            SIMYAMLCTR DVSYALS TSR+QS+ GE HW AVKNILKYLRRTK+MFL+YG Q+ ELV
Sbjct: 962  SIMYAMLCTRLDVSYALSATSRYQSDLGESHWIAVKNILKYLRRTKDMFLVYGRQE-ELV 1020

Query: 77   VNGYTDASFQTDVDDFRSQSGFVFC 3
            VNGYTDASFQTD DDFRSQSGFVFC
Sbjct: 1021 VNGYTDASFQTDKDDFRSQSGFVFC 1045


>gb|AAX94813.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
            Japonica Group] gi|77550379|gb|ABA93176.1|
            retrotransposon protein, putative, Ty1-copia subclass
            [Oryza sativa Japonica Group]
          Length = 938

 Score =  399 bits (1025), Expect = e-109
 Identities = 195/264 (73%), Positives = 227/264 (85%)
 Frame = -2

Query: 797  VYMTQPEGFIHLLNSSKVCKLQRSIYGLKQASRSWNLRFDEAIKEFNFIKNDDEPCVYKR 618
            VYMTQP+GF+   ++ K+CKLQ+SIYGLKQASRSWN+ FDE +K   F+KN+ EPCVYK+
Sbjct: 639  VYMTQPKGFVDPQSAKKICKLQKSIYGLKQASRSWNIHFDEIVKALGFVKNEQEPCVYKK 698

Query: 617  VTENAVVFLVLYVDDILLIGNDILTFQSVKTWLGKCFSMKDLGEAAYILGIRISRDRSKN 438
            ++ +A+VFL+LYVDDILLI NDI   +SVKT L   FSMKDLGEAAYILGIRI +DRSK 
Sbjct: 699  ISGSALVFLILYVDDILLIENDIPMLESVKTSLKNSFSMKDLGEAAYILGIRIYKDRSKR 758

Query: 437  LIGLSQNGYIDKVLKRFSMQDSKRGFLPMSHGVKLSKSQSPTTREDTERMSKIPYASAIG 258
            LIGLSQ+ YIDKVLKRF+MQDSK+GFLPMSHG+ L K+Q P T  +  +MS IPYASAIG
Sbjct: 759  LIGLSQSTYIDKVLKRFNMQDSKKGFLPMSHGINLGKNQCPQTTNERNKMSVIPYASAIG 818

Query: 257  SIMYAMLCTRPDVSYALSMTSRFQSNPGEPHWTAVKNILKYLRRTKEMFLIYGGQDGELV 78
            SIMYAMLCTRPDVSYALS TS++QS+PGE HW A+KNILKYLRRTK+MFL+YGGQ+ ELV
Sbjct: 819  SIMYAMLCTRPDVSYALSATSQYQSDPGESHWIALKNILKYLRRTKDMFLVYGGQE-ELV 877

Query: 77   VNGYTDASFQTDVDDFRSQSGFVF 6
            VNGYTDASFQ D DDFRSQSGFVF
Sbjct: 878  VNGYTDASFQIDKDDFRSQSGFVF 901


>gb|ADB85429.1| putative retrotransposon protein [Phyllostachys edulis]
          Length = 1313

 Score =  397 bits (1020), Expect = e-108
 Identities = 197/264 (74%), Positives = 229/264 (86%)
 Frame = -2

Query: 797  VYMTQPEGFIHLLNSSKVCKLQRSIYGLKQASRSWNLRFDEAIKEFNFIKNDDEPCVYKR 618
            VYMTQPEGF+   N+SKVCKLQ+SIYGLKQASRSWN+RFDE IK F F+KN +EPCVY +
Sbjct: 916  VYMTQPEGFVDPNNASKVCKLQKSIYGLKQASRSWNIRFDEEIKRFGFVKNKEEPCVYMK 975

Query: 617  VTENAVVFLVLYVDDILLIGNDILTFQSVKTWLGKCFSMKDLGEAAYILGIRISRDRSKN 438
            V+ + +V L+LYVDDILLIGNDI   +SVK  L   FSMKDLGEAAYILGI+I RDRS+ 
Sbjct: 976  VSGSTLVILILYVDDILLIGNDIPMLESVKASLKNSFSMKDLGEAAYILGIKIYRDRSRR 1035

Query: 437  LIGLSQNGYIDKVLKRFSMQDSKRGFLPMSHGVKLSKSQSPTTREDTERMSKIPYASAIG 258
            LIGLSQ+ YIDKVL RF+MQ++K+GFLPMSHG+  SKSQ P+T ++ +RM+ IPYASAIG
Sbjct: 1036 LIGLSQSTYIDKVLIRFNMQNTKKGFLPMSHGISPSKSQRPSTTDERDRMNGIPYASAIG 1095

Query: 257  SIMYAMLCTRPDVSYALSMTSRFQSNPGEPHWTAVKNILKYLRRTKEMFLIYGGQDGELV 78
            SIMYAM+CTR DVSYALS+TSR+Q++PGE HWTAVKNILKYLRRTK+ FLIYGG D ELV
Sbjct: 1096 SIMYAMICTRQDVSYALSVTSRYQADPGECHWTAVKNILKYLRRTKDAFLIYGG-DEELV 1154

Query: 77   VNGYTDASFQTDVDDFRSQSGFVF 6
            VNGYTDASFQTD DD+RSQSGFVF
Sbjct: 1155 VNGYTDASFQTDKDDYRSQSGFVF 1178


>gb|ABF97213.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1142

 Score =  394 bits (1013), Expect = e-107
 Identities = 193/265 (72%), Positives = 225/265 (84%)
 Frame = -2

Query: 797  VYMTQPEGFIHLLNSSKVCKLQRSIYGLKQASRSWNLRFDEAIKEFNFIKNDDEPCVYKR 618
            VYMTQP+GF+   ++ K+CKLQ+SIYGLKQASRSWN+RFDE +K   F+KN++ PCVYK+
Sbjct: 843  VYMTQPKGFVDPQSAKKICKLQKSIYGLKQASRSWNIRFDEVVKALGFVKNEEVPCVYKK 902

Query: 617  VTENAVVFLVLYVDDILLIGNDILTFQSVKTWLGKCFSMKDLGEAAYILGIRISRDRSKN 438
            ++ +A+VFL+LYVDDILLIGNDI   +SV   L   FSMKDLGEAAYILGIRI RD SK 
Sbjct: 903  ISGSALVFLILYVDDILLIGNDIPMLESVNISLKNSFSMKDLGEAAYILGIRIYRDGSKR 962

Query: 437  LIGLSQNGYIDKVLKRFSMQDSKRGFLPMSHGVKLSKSQSPTTREDTERMSKIPYASAIG 258
            LIGLS++ YIDKVLK F+MQDSK+GFLPMSHG+ L+K+Q   T  +  +MS IPYASAIG
Sbjct: 963  LIGLSESTYIDKVLKMFNMQDSKKGFLPMSHGINLNKNQCLQTTNEQNKMSVIPYASAIG 1022

Query: 257  SIMYAMLCTRPDVSYALSMTSRFQSNPGEPHWTAVKNILKYLRRTKEMFLIYGGQDGELV 78
            SIMYAMLCTRPDVSY LS TSR+QS+P E HW AVKNILKYLRRTK+MFL+YGGQ+ ELV
Sbjct: 1023 SIMYAMLCTRPDVSYVLSATSRYQSDPSESHWIAVKNILKYLRRTKDMFLVYGGQE-ELV 1081

Query: 77   VNGYTDASFQTDVDDFRSQSGFVFC 3
            VNGYTDASFQTD DDFRSQSGFVFC
Sbjct: 1082 VNGYTDASFQTDKDDFRSQSGFVFC 1106


>gb|AAS01945.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1084

 Score =  394 bits (1013), Expect = e-107
 Identities = 193/265 (72%), Positives = 225/265 (84%)
 Frame = -2

Query: 797  VYMTQPEGFIHLLNSSKVCKLQRSIYGLKQASRSWNLRFDEAIKEFNFIKNDDEPCVYKR 618
            VYMTQP+GF+   ++ K+CKLQ+SIYGLKQASRSWN+RFDE +K   F+KN++ PCVYK+
Sbjct: 785  VYMTQPKGFVDPQSAKKICKLQKSIYGLKQASRSWNIRFDEVVKALGFVKNEEVPCVYKK 844

Query: 617  VTENAVVFLVLYVDDILLIGNDILTFQSVKTWLGKCFSMKDLGEAAYILGIRISRDRSKN 438
            ++ +A+VFL+LYVDDILLIGNDI   +SV   L   FSMKDLGEAAYILGIRI RD SK 
Sbjct: 845  ISGSALVFLILYVDDILLIGNDIPMLESVNISLKNSFSMKDLGEAAYILGIRIYRDGSKR 904

Query: 437  LIGLSQNGYIDKVLKRFSMQDSKRGFLPMSHGVKLSKSQSPTTREDTERMSKIPYASAIG 258
            LIGLS++ YIDKVLK F+MQDSK+GFLPMSHG+ L+K+Q   T  +  +MS IPYASAIG
Sbjct: 905  LIGLSESTYIDKVLKMFNMQDSKKGFLPMSHGINLNKNQCLQTTNEQNKMSVIPYASAIG 964

Query: 257  SIMYAMLCTRPDVSYALSMTSRFQSNPGEPHWTAVKNILKYLRRTKEMFLIYGGQDGELV 78
            SIMYAMLCTRPDVSY LS TSR+QS+P E HW AVKNILKYLRRTK+MFL+YGGQ+ ELV
Sbjct: 965  SIMYAMLCTRPDVSYVLSATSRYQSDPSESHWIAVKNILKYLRRTKDMFLVYGGQE-ELV 1023

Query: 77   VNGYTDASFQTDVDDFRSQSGFVFC 3
            VNGYTDASFQTD DDFRSQSGFVFC
Sbjct: 1024 VNGYTDASFQTDKDDFRSQSGFVFC 1048


>gb|ABF97078.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 649

 Score =  390 bits (1002), Expect = e-106
 Identities = 191/268 (71%), Positives = 225/268 (83%), Gaps = 3/268 (1%)
 Frame = -2

Query: 797  VYMTQPEGFIHLLNSSKVCKLQRSIYGLKQASRSWNLRFDEAIKEFNFIKNDDEPCVYKR 618
            VYMTQP+GF+   ++ ++CKLQ+SIYGLKQASRSW + FDE +K   F+KN++EPCVYK+
Sbjct: 297  VYMTQPKGFVDPQSAKRICKLQKSIYGLKQASRSWKICFDEVVKVLGFVKNEEEPCVYKK 356

Query: 617  VTENAVVFLVLYVDDILLIGNDILTFQSVKTWLGKCFSMKDLGEAAYILGIRISRDRSKN 438
            ++ + +VFL+LYVDDILLIGNDI   +SVKT L   FSMKDLGEAAYILGIRI RDRSK 
Sbjct: 357  ISGSTLVFLILYVDDILLIGNDIPMLESVKTSLKNSFSMKDLGEAAYILGIRIYRDRSKR 416

Query: 437  LIGLSQNGYIDKVLKRFSMQDSKRGFLPMSHGVKLSKSQSPTTREDTERMSKIPYASAIG 258
            LIGLSQ+ YIDKVLKRF+MQDSK+GFLPMSHG+ L K+Q P T ++  +MS IPYASAIG
Sbjct: 417  LIGLSQSTYIDKVLKRFNMQDSKKGFLPMSHGINLGKNQCPQTTDERNKMSVIPYASAIG 476

Query: 257  SIMYAMLCTRPDVSYALSMTSRFQS---NPGEPHWTAVKNILKYLRRTKEMFLIYGGQDG 87
            SI+Y MLCTRPDVSYALS TSR+Q    +PGE HW  VKNILKYLRRTK+MFL+YGGQ+ 
Sbjct: 477  SIVYGMLCTRPDVSYALSATSRYQGYVPSPGESHWIVVKNILKYLRRTKDMFLVYGGQE- 535

Query: 86   ELVVNGYTDASFQTDVDDFRSQSGFVFC 3
            E+VVNGYTDASFQTD DDFR Q GFVFC
Sbjct: 536  EIVVNGYTDASFQTDKDDFRLQFGFVFC 563


>gb|AAK52163.1|AC084831_17 putative polyprotein [Oryza sativa Japonica Group]
          Length = 637

 Score =  390 bits (1002), Expect = e-106
 Identities = 191/268 (71%), Positives = 225/268 (83%), Gaps = 3/268 (1%)
 Frame = -2

Query: 797  VYMTQPEGFIHLLNSSKVCKLQRSIYGLKQASRSWNLRFDEAIKEFNFIKNDDEPCVYKR 618
            VYMTQP+GF+   ++ ++CKLQ+SIYGLKQASRSW + FDE +K   F+KN++EPCVYK+
Sbjct: 285  VYMTQPKGFVDPQSAKRICKLQKSIYGLKQASRSWKICFDEVVKVLGFVKNEEEPCVYKK 344

Query: 617  VTENAVVFLVLYVDDILLIGNDILTFQSVKTWLGKCFSMKDLGEAAYILGIRISRDRSKN 438
            ++ + +VFL+LYVDDILLIGNDI   +SVKT L   FSMKDLGEAAYILGIRI RDRSK 
Sbjct: 345  ISGSTLVFLILYVDDILLIGNDIPMLESVKTSLKNSFSMKDLGEAAYILGIRIYRDRSKR 404

Query: 437  LIGLSQNGYIDKVLKRFSMQDSKRGFLPMSHGVKLSKSQSPTTREDTERMSKIPYASAIG 258
            LIGLSQ+ YIDKVLKRF+MQDSK+GFLPMSHG+ L K+Q P T ++  +MS IPYASAIG
Sbjct: 405  LIGLSQSTYIDKVLKRFNMQDSKKGFLPMSHGINLGKNQCPQTTDERNKMSVIPYASAIG 464

Query: 257  SIMYAMLCTRPDVSYALSMTSRFQS---NPGEPHWTAVKNILKYLRRTKEMFLIYGGQDG 87
            SI+Y MLCTRPDVSYALS TSR+Q    +PGE HW  VKNILKYLRRTK+MFL+YGGQ+ 
Sbjct: 465  SIVYGMLCTRPDVSYALSATSRYQGYVPSPGESHWIVVKNILKYLRRTKDMFLVYGGQE- 523

Query: 86   ELVVNGYTDASFQTDVDDFRSQSGFVFC 3
            E+VVNGYTDASFQTD DDFR Q GFVFC
Sbjct: 524  EIVVNGYTDASFQTDKDDFRLQFGFVFC 551


>emb|CAD39797.2| OSJNBa0071G03.10 [Oryza sativa Japonica Group]
          Length = 948

 Score =  372 bits (956), Expect = e-101
 Identities = 183/243 (75%), Positives = 211/243 (86%)
 Frame = -2

Query: 731  RSIYGLKQASRSWNLRFDEAIKEFNFIKNDDEPCVYKRVTENAVVFLVLYVDDILLIGND 552
            +SI+GLKQASRSWN+RFDE +K   F KN+ EPCVYK+++ +A+VFL+LYVDDILLIGND
Sbjct: 664  KSIHGLKQASRSWNIRFDEVVKVLGFFKNEQEPCVYKKISGSALVFLILYVDDILLIGND 723

Query: 551  ILTFQSVKTWLGKCFSMKDLGEAAYILGIRISRDRSKNLIGLSQNGYIDKVLKRFSMQDS 372
            I   +SVKT L   FSMKDLGEAAYILGIRI RDRSK LIGLSQ+ YIDKVLKRF+MQDS
Sbjct: 724  IPILESVKTLLKNSFSMKDLGEAAYILGIRIYRDRSKRLIGLSQSTYIDKVLKRFNMQDS 783

Query: 371  KRGFLPMSHGVKLSKSQSPTTREDTERMSKIPYASAIGSIMYAMLCTRPDVSYALSMTSR 192
            K+GFLPMSH + L K+Q P T ++  +MS IPYASAIGSIMYAMLCT PDVSYALS T+R
Sbjct: 784  KKGFLPMSHDINLGKNQCPQTTDERNKMSVIPYASAIGSIMYAMLCTCPDVSYALSATNR 843

Query: 191  FQSNPGEPHWTAVKNILKYLRRTKEMFLIYGGQDGELVVNGYTDASFQTDVDDFRSQSGF 12
            +QS+PGE HW AVKNILKYLRRT++MFL+YGGQ+ ELVVNGYTDASFQTD DDFRS+SGF
Sbjct: 844  YQSDPGESHWIAVKNILKYLRRTEDMFLVYGGQE-ELVVNGYTDASFQTDKDDFRSRSGF 902

Query: 11   VFC 3
            VFC
Sbjct: 903  VFC 905


>gb|ABA98367.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1745

 Score =  372 bits (954), Expect = e-100
 Identities = 183/243 (75%), Positives = 210/243 (86%)
 Frame = -2

Query: 731  RSIYGLKQASRSWNLRFDEAIKEFNFIKNDDEPCVYKRVTENAVVFLVLYVDDILLIGND 552
            +SIYGLKQASRSWN+RFDE +K   F+KN++EPCVYK+++ +A+VFL+LYVDDILLIGND
Sbjct: 1406 KSIYGLKQASRSWNIRFDEVVKALGFVKNEEEPCVYKKISGSALVFLILYVDDILLIGND 1465

Query: 551  ILTFQSVKTWLGKCFSMKDLGEAAYILGIRISRDRSKNLIGLSQNGYIDKVLKRFSMQDS 372
            I   +SVKT L   FSMKDLGEAAYI+GIRI RDRSK LIGLSQ+ YIDKVLKRF+MQDS
Sbjct: 1466 IPMLESVKTSLKNSFSMKDLGEAAYIMGIRIYRDRSKRLIGLSQSTYIDKVLKRFNMQDS 1525

Query: 371  KRGFLPMSHGVKLSKSQSPTTREDTERMSKIPYASAIGSIMYAMLCTRPDVSYALSMTSR 192
            K+GFLPMSHG+   K+Q P T ++  +MS IPYA AIGSIMYAMLCTR DVSYALS TSR
Sbjct: 1526 KKGFLPMSHGINHGKNQCPQTTDERNKMSVIPYAWAIGSIMYAMLCTRIDVSYALSATSR 1585

Query: 191  FQSNPGEPHWTAVKNILKYLRRTKEMFLIYGGQDGELVVNGYTDASFQTDVDDFRSQSGF 12
            +QS+PGE HW AVKNILKYLRRTK+MFL+YGGQ+ ELVVNGY DASFQTD DDFR QSGF
Sbjct: 1586 YQSDPGESHWIAVKNILKYLRRTKDMFLVYGGQE-ELVVNGYIDASFQTDKDDFRLQSGF 1644

Query: 11   VFC 3
            VFC
Sbjct: 1645 VFC 1647


>gb|ABA97342.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1050

 Score =  367 bits (942), Expect = 3e-99
 Identities = 189/265 (71%), Positives = 212/265 (80%)
 Frame = -2

Query: 797  VYMTQPEGFIHLLNSSKVCKLQRSIYGLKQASRSWNLRFDEAIKEFNFIKNDDEPCVYKR 618
            VYMTQ +GF+   ++ K+CKLQ+SIYGLKQASRSWN+RFDE +K +   K          
Sbjct: 668  VYMTQLKGFVDPQSAKKICKLQKSIYGLKQASRSWNIRFDEVVKAWALSKTKKS------ 721

Query: 617  VTENAVVFLVLYVDDILLIGNDILTFQSVKTWLGKCFSMKDLGEAAYILGIRISRDRSKN 438
                    LVLYVDDILLIGNDI   +SVKT L   FSMKDLGEAAYILGIRI RDRSK 
Sbjct: 722  --------LVLYVDDILLIGNDIPMLESVKTSLKNSFSMKDLGEAAYILGIRIYRDRSKR 773

Query: 437  LIGLSQNGYIDKVLKRFSMQDSKRGFLPMSHGVKLSKSQSPTTREDTERMSKIPYASAIG 258
            LIGLSQ+ YIDKVLKRF+MQDSK+GFLPMSHG+ L K+Q P T ++  +MS IPYASAIG
Sbjct: 774  LIGLSQSTYIDKVLKRFNMQDSKKGFLPMSHGINLGKNQCPQTTDERNKMSVIPYASAIG 833

Query: 257  SIMYAMLCTRPDVSYALSMTSRFQSNPGEPHWTAVKNILKYLRRTKEMFLIYGGQDGELV 78
            SIMYAMLCT PDVSYALS TSR+QS+PGE HW AVKNILKYLRRTK+MFL+YGGQ+ ELV
Sbjct: 834  SIMYAMLCTHPDVSYALSATSRYQSDPGESHWIAVKNILKYLRRTKDMFLVYGGQE-ELV 892

Query: 77   VNGYTDASFQTDVDDFRSQSGFVFC 3
            V GYTDASFQTD DDFRSQSGFVFC
Sbjct: 893  VKGYTDASFQTDKDDFRSQSGFVFC 917


>emb|CAE03845.1| OSJNBb0089K06.4 [Oryza sativa Japonica Group]
          Length = 873

 Score =  359 bits (921), Expect = 7e-97
 Identities = 180/258 (69%), Positives = 212/258 (82%)
 Frame = -2

Query: 797  VYMTQPEGFIHLLNSSKVCKLQRSIYGLKQASRSWNLRFDEAIKEFNFIKNDDEPCVYKR 618
            VYMTQ +GF+   ++ K+CKL +SIYGLKQAS+SWN+RFDE +K   F+KN +EPCVYK+
Sbjct: 629  VYMTQSKGFVDPQSAKKICKLHKSIYGLKQASQSWNIRFDEVVKALVFVKNKEEPCVYKK 688

Query: 617  VTENAVVFLVLYVDDILLIGNDILTFQSVKTWLGKCFSMKDLGEAAYILGIRISRDRSKN 438
            +            +DILLIGNDI   +SVKT L   FSMKDLGEAAYILGIRI RDRSK 
Sbjct: 689  I------------NDILLIGNDIPMLESVKTSLKNSFSMKDLGEAAYILGIRIYRDRSKR 736

Query: 437  LIGLSQNGYIDKVLKRFSMQDSKRGFLPMSHGVKLSKSQSPTTREDTERMSKIPYASAIG 258
            L+GLSQ+ YIDKVLKRF+MQDSK+GFLPMS+G+ L K+Q P T ++  +MS IPYASAIG
Sbjct: 737  LVGLSQSTYIDKVLKRFNMQDSKKGFLPMSYGINLGKNQYPQTTDERNKMSVIPYASAIG 796

Query: 257  SIMYAMLCTRPDVSYALSMTSRFQSNPGEPHWTAVKNILKYLRRTKEMFLIYGGQDGELV 78
            SIMYAMLCTR DVSYALS+T+R+QS+PGE HW AVKNILKYLRRTK+MFL+YGGQ+ ELV
Sbjct: 797  SIMYAMLCTRLDVSYALSVTNRYQSDPGESHWIAVKNILKYLRRTKDMFLVYGGQE-ELV 855

Query: 77   VNGYTDASFQTDVDDFRS 24
            VNGYTDASFQTD DDFRS
Sbjct: 856  VNGYTDASFQTDKDDFRS 873


>gb|ADJ18449.1| gag/pol protein [Bryonia dioica]
          Length = 1292

 Score =  336 bits (862), Expect = 5e-90
 Identities = 161/264 (60%), Positives = 197/264 (74%)
 Frame = -2

Query: 797  VYMTQPEGFIHLLNSSKVCKLQRSIYGLKQASRSWNLRFDEAIKEFNFIKNDDEPCVYKR 618
            +YM QPEGFI      KVCKLQ+SIYGLKQASRSWN+RFD AIK + F +N DEPCVYK+
Sbjct: 930  IYMVQPEGFIAQDQEQKVCKLQKSIYGLKQASRSWNIRFDTAIKSYGFEQNVDEPCVYKK 989

Query: 617  VTENAVVFLVLYVDDILLIGNDILTFQSVKTWLGKCFSMKDLGEAAYILGIRISRDRSKN 438
            +  + V FL+LYVDDILLIGND+     VK WL   F MKDLGEA YILGI+I R+R   
Sbjct: 990  IVNSVVAFLILYVDDILLIGNDVEYLTDVKKWLNTQFQMKDLGEAQYILGIQIVRNRKNK 1049

Query: 437  LIGLSQNGYIDKVLKRFSMQDSKRGFLPMSHGVKLSKSQSPTTREDTERMSKIPYASAIG 258
             + +SQ  YIDKVL R+ MQ+SK+G LP  HG+ LSK Q P T ++ E M  IPY+SA+G
Sbjct: 1050 TLAMSQASYIDKVLSRYKMQNSKKGQLPFRHGIHLSKEQCPKTPQEVEDMRNIPYSSAVG 1109

Query: 257  SIMYAMLCTRPDVSYALSMTSRFQSNPGEPHWTAVKNILKYLRRTKEMFLIYGGQDGELV 78
            S+MYAMLCTRPD+ Y++ + SR+QSNPG  HWTAVKNILKYLRRT+   L+YG +D  L+
Sbjct: 1110 SLMYAMLCTRPDICYSVGIVSRYQSNPGRDHWTAVKNILKYLRRTRNYMLVYGAKD--LI 1167

Query: 77   VNGYTDASFQTDVDDFRSQSGFVF 6
            + GYTD+ FQ+D D  +S SG VF
Sbjct: 1168 LTGYTDSDFQSDKDARKSTSGSVF 1191


>emb|CAN69397.1| hypothetical protein VITISV_021035 [Vitis vinifera]
          Length = 668

 Score =  330 bits (846), Expect = 3e-88
 Identities = 161/264 (60%), Positives = 201/264 (76%)
 Frame = -2

Query: 797  VYMTQPEGFIHLLNSSKVCKLQRSIYGLKQASRSWNLRFDEAIKEFNFIKNDDEPCVYKR 618
            +YM QPEGF+      KVCKLQRSIYGLKQASRSWN+ F+EAIK + F +N  EPCVYK+
Sbjct: 270  IYMVQPEGFVVKDQEQKVCKLQRSIYGLKQASRSWNIIFNEAIKSYGFEQNLGEPCVYKQ 329

Query: 617  VTENAVVFLVLYVDDILLIGNDILTFQSVKTWLGKCFSMKDLGEAAYILGIRISRDRSKN 438
            +  + VVFLVLYVDDILLIGND+ +   VK WL   F MKDLGEA+YILGI+++RDR   
Sbjct: 330  IGGDKVVFLVLYVDDILLIGNDVESLSKVKNWLASQFQMKDLGEASYILGIQMTRDRKNR 389

Query: 437  LIGLSQNGYIDKVLKRFSMQDSKRGFLPMSHGVKLSKSQSPTTREDTERMSKIPYASAIG 258
            L+ LSQ  YIDKVL +F+M++SK+G LP  HGV LSK Q P T +D E+M ++PYASA+G
Sbjct: 390  LLALSQAAYIDKVLVKFAMENSKKGNLPSRHGVHLSKEQCPKTPQDEEKMRRVPYASAVG 449

Query: 257  SIMYAMLCTRPDVSYALSMTSRFQSNPGEPHWTAVKNILKYLRRTKEMFLIYGGQDGELV 78
            S+MYAMLCTRPD+ +A+ + SR+QSNPG  HW AVK+ILKYLRRT+   L+Y G+  EL+
Sbjct: 450  SLMYAMLCTRPDICFAVGVVSRYQSNPGLDHWVAVKHILKYLRRTRNYMLVYSGR--ELI 507

Query: 77   VNGYTDASFQTDVDDFRSQSGFVF 6
              GYTD+ FQ+D D  +S S  VF
Sbjct: 508  PIGYTDSDFQSDRDSRKSTSEAVF 531


>gb|ABF97393.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1073

 Score =  315 bits (808), Expect = 9e-84
 Identities = 152/209 (72%), Positives = 181/209 (86%)
 Frame = -2

Query: 797  VYMTQPEGFIHLLNSSKVCKLQRSIYGLKQASRSWNLRFDEAIKEFNFIKNDDEPCVYKR 618
            VYMTQP+GF+ L ++  +CKLQ+SIYGLKQASRSWN+RFDE +K   F+KN++EPCVYK+
Sbjct: 850  VYMTQPKGFVDLQSAKMICKLQKSIYGLKQASRSWNIRFDELVKALGFLKNEEEPCVYKK 909

Query: 617  VTENAVVFLVLYVDDILLIGNDILTFQSVKTWLGKCFSMKDLGEAAYILGIRISRDRSKN 438
            ++ +A+VFL+LYVDDILLIGNDI   +SVKT L   FSMKDLGEAAYILGIRI RDRSK 
Sbjct: 910  ISGSALVFLILYVDDILLIGNDIPMLESVKTSLKNSFSMKDLGEAAYILGIRIYRDRSKR 969

Query: 437  LIGLSQNGYIDKVLKRFSMQDSKRGFLPMSHGVKLSKSQSPTTREDTERMSKIPYASAIG 258
            LIGLSQ+ YIDK+LKRF+MQDSK+GFLPMSHG+ L K+Q P T ++  +MS IPYASAIG
Sbjct: 970  LIGLSQSTYIDKMLKRFNMQDSKKGFLPMSHGINLGKNQCPQTTDERNKMSVIPYASAIG 1029

Query: 257  SIMYAMLCTRPDVSYALSMTSRFQSNPGE 171
            SIMYAMLCTRPDVSYALS TSR+QS+PGE
Sbjct: 1030 SIMYAMLCTRPDVSYALSATSRYQSDPGE 1058


>gb|AAR06328.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1063

 Score =  315 bits (808), Expect = 9e-84
 Identities = 152/209 (72%), Positives = 181/209 (86%)
 Frame = -2

Query: 797  VYMTQPEGFIHLLNSSKVCKLQRSIYGLKQASRSWNLRFDEAIKEFNFIKNDDEPCVYKR 618
            VYMTQP+GF+ L ++  +CKLQ+SIYGLKQASRSWN+RFDE +K   F+KN++EPCVYK+
Sbjct: 840  VYMTQPKGFVDLQSAKMICKLQKSIYGLKQASRSWNIRFDELVKALGFLKNEEEPCVYKK 899

Query: 617  VTENAVVFLVLYVDDILLIGNDILTFQSVKTWLGKCFSMKDLGEAAYILGIRISRDRSKN 438
            ++ +A+VFL+LYVDDILLIGNDI   +SVKT L   FSMKDLGEAAYILGIRI RDRSK 
Sbjct: 900  ISGSALVFLILYVDDILLIGNDIPMLESVKTSLKNSFSMKDLGEAAYILGIRIYRDRSKR 959

Query: 437  LIGLSQNGYIDKVLKRFSMQDSKRGFLPMSHGVKLSKSQSPTTREDTERMSKIPYASAIG 258
            LIGLSQ+ YIDK+LKRF+MQDSK+GFLPMSHG+ L K+Q P T ++  +MS IPYASAIG
Sbjct: 960  LIGLSQSTYIDKMLKRFNMQDSKKGFLPMSHGINLGKNQCPQTTDERNKMSVIPYASAIG 1019

Query: 257  SIMYAMLCTRPDVSYALSMTSRFQSNPGE 171
            SIMYAMLCTRPDVSYALS TSR+QS+PGE
Sbjct: 1020 SIMYAMLCTRPDVSYALSATSRYQSDPGE 1048