BLASTX nr result
ID: Catharanthus22_contig00035771
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Catharanthus22_contig00035771
(377 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAG50751.1|AC079733_19 polyprotein, putative [Arabidopsis tha... 65 2e-09
dbj|BAB10743.1| retroelement pol polyprotein-like [Arabidopsis t... 65 2e-09
emb|CAA18107.1| LTR retrotransposon like protein [Arabidopsis th... 65 2e-09
emb|CAN60886.1| hypothetical protein VITISV_008816 [Vitis vinifera] 60 3e-09
emb|CAN80919.1| hypothetical protein VITISV_002640 [Vitis vinifera] 63 5e-09
gb|AAG09097.1|AC009323_8 Putative retroelement polyprotein [Arab... 65 7e-09
emb|CAN61658.1| hypothetical protein VITISV_040310 [Vitis vinifera] 64 9e-09
emb|CAN83015.1| hypothetical protein VITISV_041694 [Vitis vinifera] 64 9e-09
emb|CAN73272.1| hypothetical protein VITISV_013115 [Vitis vinifera] 64 1e-08
dbj|BAB10837.1| retroelement pol polyprotein-like [Arabidopsis t... 65 1e-08
emb|CAN82171.1| hypothetical protein VITISV_040546 [Vitis vinifera] 64 2e-08
emb|CAN76913.1| hypothetical protein VITISV_037050 [Vitis vinifera] 62 6e-08
emb|CAN65229.1| hypothetical protein VITISV_011708 [Vitis vinifera] 62 1e-07
dbj|BAA97287.1| retroelement pol polyprotein-like [Arabidopsis t... 59 2e-07
gb|AAT40486.1| putative polyprotein [Solanum demissum] 60 2e-07
emb|CAN76645.1| hypothetical protein VITISV_004685 [Vitis vinifera] 61 2e-07
gb|AAD19784.1| putative retroelement pol polyprotein [Arabidopsi... 57 2e-07
gb|AAD23883.1| putative retroelement pol polyprotein [Arabidopsi... 57 3e-07
emb|CAN83978.1| hypothetical protein VITISV_007067 [Vitis vinifera] 56 3e-07
emb|CAN83721.1| hypothetical protein VITISV_003961 [Vitis vinifera] 60 4e-07
>gb|AAG50751.1|AC079733_19 polyprotein, putative [Arabidopsis thaliana]
Length = 1468
Score = 64.7 bits (156), Expect(2) = 2e-09
Identities = 37/68 (54%), Positives = 46/68 (67%)
Frame = +2
Query: 23 FLYVLIYGDDLIVFGSELAVNSIFTFYLNNYFLIEDLKHLKYFLDIEVTRNAFGLYLFLR 202
F++VL+Y DDLI+ GS + F YL + F ++DL LKYFL IEV+RNA G YL R
Sbjct: 1145 FVHVLVYVDDLIISGSCPDAVAQFKSYLESCFHMKDLGLLKYFLGIEVSRNAQGFYLSQR 1204
Query: 203 KYN*DIIS 226
KY DIIS
Sbjct: 1205 KYVLDIIS 1212
Score = 22.7 bits (47), Expect(2) = 2e-09
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +1
Query: 223 IFETKLLDSKHLATPIK*NHHLATIIEALLSSS 321
I E LL ++ A P++ NH L+ LLS S
Sbjct: 1211 ISEMGLLGARPSAFPLEQNHKLSLSTSPLLSDS 1243
>dbj|BAB10743.1| retroelement pol polyprotein-like [Arabidopsis thaliana]
Length = 1109
Score = 64.7 bits (156), Expect(2) = 2e-09
Identities = 37/68 (54%), Positives = 46/68 (67%)
Frame = +2
Query: 23 FLYVLIYGDDLIVFGSELAVNSIFTFYLNNYFLIEDLKHLKYFLDIEVTRNAFGLYLFLR 202
F++VL+Y DDLI+ GS + F YL + F ++DL LKYFL IEV+RNA G YL R
Sbjct: 786 FVHVLVYVDDLIISGSCPDAVAQFKSYLESCFHMKDLGLLKYFLGIEVSRNAQGFYLSQR 845
Query: 203 KYN*DIIS 226
KY DIIS
Sbjct: 846 KYVLDIIS 853
Score = 22.7 bits (47), Expect(2) = 2e-09
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +1
Query: 223 IFETKLLDSKHLATPIK*NHHLATIIEALLSSS 321
I E LL ++ A P++ NH L+ LLS S
Sbjct: 852 ISEMGLLGARPSAFPLEQNHKLSLSTSPLLSDS 884
>emb|CAA18107.1| LTR retrotransposon like protein [Arabidopsis thaliana]
gi|7269049|emb|CAB79159.1| LTR retrotransposon like
protein [Arabidopsis thaliana]
Length = 1109
Score = 64.7 bits (156), Expect(2) = 2e-09
Identities = 37/68 (54%), Positives = 46/68 (67%)
Frame = +2
Query: 23 FLYVLIYGDDLIVFGSELAVNSIFTFYLNNYFLIEDLKHLKYFLDIEVTRNAFGLYLFLR 202
F++VL+Y DDLI+ GS + F YL + F ++DL LKYFL IEV+RNA G YL R
Sbjct: 786 FVHVLVYVDDLIISGSCPDAVAQFKSYLESCFHMKDLGLLKYFLGIEVSRNAQGFYLSQR 845
Query: 203 KYN*DIIS 226
KY DIIS
Sbjct: 846 KYVLDIIS 853
Score = 22.7 bits (47), Expect(2) = 2e-09
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +1
Query: 223 IFETKLLDSKHLATPIK*NHHLATIIEALLSSS 321
I E LL ++ A P++ NH L+ LLS S
Sbjct: 852 ISEMGLLGARPSAFPLEQNHKLSLSTSPLLSDS 884
>emb|CAN60886.1| hypothetical protein VITISV_008816 [Vitis vinifera]
Length = 616
Score = 60.5 bits (145), Expect(2) = 3e-09
Identities = 33/65 (50%), Positives = 42/65 (64%)
Frame = +2
Query: 32 VLIYGDDLIVFGSELAVNSIFTFYLNNYFLIEDLKHLKYFLDIEVTRNAFGLYLFLRKYN 211
+L+Y DDLI+ G++ V F YLN F ++DL L YFL IEV N+ GL+L RKY
Sbjct: 447 ILVYIDDLIILGTDEVVVQRFKDYLNQCFHMKDLGKLNYFLGIEVAWNSEGLFLCQRKYA 506
Query: 212 *DIIS 226
DIIS
Sbjct: 507 LDIIS 511
Score = 26.2 bits (56), Expect(2) = 3e-09
Identities = 19/51 (37%), Positives = 26/51 (50%)
Frame = +1
Query: 223 IFETKLLDSKHLATPIK*NHHLATIIEALLSSSPLRIGTYIW*DCLIYLTI 375
I +T LL +K TP++ NH LA + +L L + LIYLTI
Sbjct: 510 ISKTGLLGAKPAKTPLEQNHKLALAMGPILKDPALYMRLV---GRLIYLTI 557
>emb|CAN80919.1| hypothetical protein VITISV_002640 [Vitis vinifera]
Length = 1450
Score = 62.8 bits (151), Expect(2) = 5e-09
Identities = 33/65 (50%), Positives = 44/65 (67%)
Frame = +2
Query: 32 VLIYGDDLIVFGSELAVNSIFTFYLNNYFLIEDLKHLKYFLDIEVTRNAFGLYLFLRKYN 211
VL+Y DDLI+ ++ A F YLN+ F ++DL LKYFL IEV R++ GL+L RKY
Sbjct: 1141 VLVYVDDLIISRNDSAALKTFKAYLNDCFKMKDLGVLKYFLGIEVARSSAGLFLCQRKYT 1200
Query: 212 *DIIS 226
DI+S
Sbjct: 1201 LDIVS 1205
Score = 23.1 bits (48), Expect(2) = 5e-09
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = +1
Query: 223 IFETKLLDSKHLATPIK*NHHLATIIEALLSS 318
+ ET LL +K PI+ NH L LLS+
Sbjct: 1204 VSETGLLGAKPCGFPIEQNHRLGLANGELLSN 1235
>gb|AAG09097.1|AC009323_8 Putative retroelement polyprotein [Arabidopsis thaliana]
Length = 1486
Score = 65.5 bits (158), Expect = 7e-09
Identities = 34/67 (50%), Positives = 48/67 (71%)
Frame = +2
Query: 26 LYVLIYGDDLIVFGSELAVNSIFTFYLNNYFLIEDLKHLKYFLDIEVTRNAFGLYLFLRK 205
L+VL+Y DDLI+ G+ +AV + F YL++ F ++DL L+YFL IEV R+ G+YL RK
Sbjct: 1164 LHVLVYVDDLIITGTTIAVITEFKHYLSSCFYMKDLGILRYFLGIEVARSPEGIYLCQRK 1223
Query: 206 YN*DIIS 226
Y DII+
Sbjct: 1224 YALDIIT 1230
>emb|CAN61658.1| hypothetical protein VITISV_040310 [Vitis vinifera]
Length = 1461
Score = 63.9 bits (154), Expect(2) = 9e-09
Identities = 33/65 (50%), Positives = 45/65 (69%)
Frame = +2
Query: 32 VLIYGDDLIVFGSELAVNSIFTFYLNNYFLIEDLKHLKYFLDIEVTRNAFGLYLFLRKYN 211
VL+Y DDLI+ G++ A F YL++ F ++DL LKYFL IEV R++ GL+L RKY
Sbjct: 1141 VLVYVDDLIISGNDSAALKTFKAYLSDCFKMKDLGVLKYFLGIEVARSSAGLFLCQRKYT 1200
Query: 212 *DIIS 226
DI+S
Sbjct: 1201 LDIVS 1205
Score = 21.2 bits (43), Expect(2) = 9e-09
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +1
Query: 223 IFETKLLDSKHLATPIK*NHHLATIIEALLSS 318
+ E LL +K PI+ NH L LLS+
Sbjct: 1204 VSEAGLLGAKPCGFPIEQNHRLGLANGELLSN 1235
>emb|CAN83015.1| hypothetical protein VITISV_041694 [Vitis vinifera]
Length = 1099
Score = 63.9 bits (154), Expect(2) = 9e-09
Identities = 33/65 (50%), Positives = 45/65 (69%)
Frame = +2
Query: 32 VLIYGDDLIVFGSELAVNSIFTFYLNNYFLIEDLKHLKYFLDIEVTRNAFGLYLFLRKYN 211
VL+Y DDLI+ G++ A F YL++ F ++DL LKYFL IEV R++ GL+L RKY
Sbjct: 779 VLVYVDDLIISGNDSAALKTFKAYLSDCFKMKDLGVLKYFLGIEVARSSAGLFLCQRKYT 838
Query: 212 *DIIS 226
DI+S
Sbjct: 839 LDIVS 843
Score = 21.2 bits (43), Expect(2) = 9e-09
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +1
Query: 223 IFETKLLDSKHLATPIK*NHHLATIIEALLSS 318
+ E LL +K PI+ NH L LLS+
Sbjct: 842 VSEAGLLGAKPCGFPIEQNHRLGLANGELLSN 873
>emb|CAN73272.1| hypothetical protein VITISV_013115 [Vitis vinifera]
Length = 1178
Score = 63.9 bits (154), Expect(2) = 1e-08
Identities = 33/65 (50%), Positives = 45/65 (69%)
Frame = +2
Query: 32 VLIYGDDLIVFGSELAVNSIFTFYLNNYFLIEDLKHLKYFLDIEVTRNAFGLYLFLRKYN 211
VL+Y DDLI+ G++ A F YL++ F ++DL LKYFL IEV R++ GL+L RKY
Sbjct: 858 VLVYVDDLIISGNDSAALKTFKAYLSDCFKMKDLGVLKYFLGIEVARSSAGLFLCQRKYT 917
Query: 212 *DIIS 226
DI+S
Sbjct: 918 LDIVS 922
Score = 20.8 bits (42), Expect(2) = 1e-08
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +1
Query: 223 IFETKLLDSKHLATPIK*NHHLATIIEALLSS 318
+ E LL +K PI+ NH L LLS+
Sbjct: 921 VSEAGLLGAKPCGFPIEQNHRLXLANGELLSN 952
>dbj|BAB10837.1| retroelement pol polyprotein-like [Arabidopsis thaliana]
Length = 1462
Score = 64.7 bits (156), Expect = 1e-08
Identities = 34/67 (50%), Positives = 47/67 (70%)
Frame = +2
Query: 26 LYVLIYGDDLIVFGSELAVNSIFTFYLNNYFLIEDLKHLKYFLDIEVTRNAFGLYLFLRK 205
L++L+Y DDLI+ GS L V + F YL++ F ++DL L+YFL IEV R+ G+YL RK
Sbjct: 1126 LHILVYVDDLIITGSSLDVITKFKGYLSSCFYMKDLGILRYFLGIEVARSPAGIYLCQRK 1185
Query: 206 YN*DIIS 226
Y DII+
Sbjct: 1186 YAIDIIT 1192
>emb|CAN82171.1| hypothetical protein VITISV_040546 [Vitis vinifera]
Length = 1129
Score = 63.9 bits (154), Expect = 2e-08
Identities = 33/65 (50%), Positives = 45/65 (69%)
Frame = +2
Query: 32 VLIYGDDLIVFGSELAVNSIFTFYLNNYFLIEDLKHLKYFLDIEVTRNAFGLYLFLRKYN 211
VL+Y DDLI+ G++ A F YL++ F ++DL LKYFL IEV R++ GL+L RKY
Sbjct: 809 VLVYVDDLIISGNDSAALKTFKAYLSDCFKMKDLGVLKYFLGIEVARSSAGLFLCQRKYT 868
Query: 212 *DIIS 226
DI+S
Sbjct: 869 LDIVS 873
>emb|CAN76913.1| hypothetical protein VITISV_037050 [Vitis vinifera]
Length = 992
Score = 62.4 bits (150), Expect = 6e-08
Identities = 33/65 (50%), Positives = 44/65 (67%)
Frame = +2
Query: 32 VLIYGDDLIVFGSELAVNSIFTFYLNNYFLIEDLKHLKYFLDIEVTRNAFGLYLFLRKYN 211
VL+Y DDLI+ G++ A F YL++ F ++DL LKYFL IEV R++ GL+L RKY
Sbjct: 758 VLVYVDDLIISGNDSAALKTFKAYLSDCFKMKDLGVLKYFLGIEVARSSAGLFLCQRKYK 817
Query: 212 *DIIS 226
DI S
Sbjct: 818 LDIXS 822
>emb|CAN65229.1| hypothetical protein VITISV_011708 [Vitis vinifera]
Length = 1149
Score = 61.6 bits (148), Expect = 1e-07
Identities = 33/64 (51%), Positives = 42/64 (65%)
Frame = +2
Query: 32 VLIYGDDLIVFGSELAVNSIFTFYLNNYFLIEDLKHLKYFLDIEVTRNAFGLYLFLRKYN 211
+L+Y DDLI+ G++ V F YLN F ++DL LKYFL IEV RN+ GL+L KY
Sbjct: 868 ILVYVDDLIISGTDEVVVQXFKDYLNQCFHMKDLGKLKYFLGIEVARNSEGLFLCQLKYA 927
Query: 212 *DII 223
DII
Sbjct: 928 LDII 931
>dbj|BAA97287.1| retroelement pol polyprotein-like [Arabidopsis thaliana]
Length = 1491
Score = 58.9 bits (141), Expect(2) = 2e-07
Identities = 33/67 (49%), Positives = 43/67 (64%)
Frame = +2
Query: 26 LYVLIYGDDLIVFGSELAVNSIFTFYLNNYFLIEDLKHLKYFLDIEVTRNAFGLYLFLRK 205
L VL+Y DDLI+ G++ + F YL F ++DL LKYFL IEV+R G++L RK
Sbjct: 1169 LRVLVYVDDLIICGNDEYMVQKFKEYLGRCFSMKDLGKLKYFLGIEVSRGPDGIFLSQRK 1228
Query: 206 YN*DIIS 226
Y DIIS
Sbjct: 1229 YALDIIS 1235
Score = 21.9 bits (45), Expect(2) = 2e-07
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = +1
Query: 223 IFETKLLDSKHLATPIK*NHHLAT 294
I ++ L ++ TP++ NHHLA+
Sbjct: 1234 ISDSGTLGARPAYTPLEQNHHLAS 1257
>gb|AAT40486.1| putative polyprotein [Solanum demissum]
Length = 1065
Score = 60.1 bits (144), Expect(2) = 2e-07
Identities = 33/67 (49%), Positives = 43/67 (64%)
Frame = +2
Query: 26 LYVLIYGDDLIVFGSELAVNSIFTFYLNNYFLIEDLKHLKYFLDIEVTRNAFGLYLFLRK 205
L+VL+Y DDLI+ G + + F YL F ++DL LKYFL IEV R+ GL+L RK
Sbjct: 833 LHVLVYVDDLIITGDDSSSIVCFKQYLQQCFHMKDLGPLKYFLGIEVARSRSGLFLCQRK 892
Query: 206 YN*DIIS 226
Y DI+S
Sbjct: 893 YALDILS 899
Score = 20.8 bits (42), Expect(2) = 2e-07
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +1
Query: 229 ETKLLDSKHLATPIK*NHHLA 291
E+ LL +K + PI+ NH LA
Sbjct: 900 ESGLLGAKPASFPIEQNHKLA 920
>emb|CAN76645.1| hypothetical protein VITISV_004685 [Vitis vinifera]
Length = 1196
Score = 60.8 bits (146), Expect = 2e-07
Identities = 31/65 (47%), Positives = 44/65 (67%)
Frame = +2
Query: 32 VLIYGDDLIVFGSELAVNSIFTFYLNNYFLIEDLKHLKYFLDIEVTRNAFGLYLFLRKYN 211
VL+Y DDLI+ G++ A F YL++ F +++L LKYFL IEV R++ GL+L KY
Sbjct: 985 VLVYVDDLIISGNDSAALKTFKAYLSDCFKMKBLGVLKYFLGIEVARSSAGLFLCQXKYT 1044
Query: 212 *DIIS 226
DI+S
Sbjct: 1045 LDIVS 1049
>gb|AAD19784.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1501
Score = 57.0 bits (136), Expect(2) = 2e-07
Identities = 31/67 (46%), Positives = 44/67 (65%)
Frame = +2
Query: 26 LYVLIYGDDLIVFGSELAVNSIFTFYLNNYFLIEDLKHLKYFLDIEVTRNAFGLYLFLRK 205
L VLIY DDL++ G++ + F YL+ F ++DL LKYFL IEV+R G++L RK
Sbjct: 1179 LRVLIYVDDLLICGNDGYMLQKFKDYLSRCFSMKDLGKLKYFLGIEVSRGPEGIFLSQRK 1238
Query: 206 YN*DIIS 226
Y D+I+
Sbjct: 1239 YALDVIA 1245
Score = 23.5 bits (49), Expect(2) = 2e-07
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +1
Query: 241 LDSKHLATPIK*NHHLATIIEALLS 315
L S+ TP++ NHHLA+ LLS
Sbjct: 1250 LGSRPAHTPLEQNHHLASDDGPLLS 1274
>gb|AAD23883.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1156
Score = 57.4 bits (137), Expect(2) = 3e-07
Identities = 31/67 (46%), Positives = 44/67 (65%)
Frame = +2
Query: 26 LYVLIYGDDLIVFGSELAVNSIFTFYLNNYFLIEDLKHLKYFLDIEVTRNAFGLYLFLRK 205
L VL+Y DDL++ G++ + F YL F ++DL LKYFL IEV+R + G++L RK
Sbjct: 826 LRVLVYVDDLLICGNDGYMLQKFKEYLGRCFSMKDLGKLKYFLGIEVSRGSEGIFLSQRK 885
Query: 206 YN*DIIS 226
Y DII+
Sbjct: 886 YALDIIT 892
Score = 22.7 bits (47), Expect(2) = 3e-07
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +1
Query: 262 TPIK*NHHLATIIEALLSSS 321
TP++ NHHLAT LL+ +
Sbjct: 904 TPLEQNHHLATDDGPLLADA 923
>emb|CAN83978.1| hypothetical protein VITISV_007067 [Vitis vinifera]
Length = 514
Score = 56.2 bits (134), Expect(2) = 3e-07
Identities = 32/67 (47%), Positives = 42/67 (62%)
Frame = +2
Query: 26 LYVLIYGDDLIVFGSELAVNSIFTFYLNNYFLIEDLKHLKYFLDIEVTRNAFGLYLFLRK 205
L VL+Y DD+I+ G++ F YL+ F ++DL LKYFL IEV RN G++L K
Sbjct: 210 LNVLVYVDDIIISGNDGTDVXQFKDYLSRCFHMKDLGKLKYFLGIEVARNPDGIFLCQCK 269
Query: 206 YN*DIIS 226
Y DIIS
Sbjct: 270 YTLDIIS 276
Score = 23.5 bits (49), Expect(2) = 3e-07
Identities = 23/53 (43%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Frame = +1
Query: 223 IFETKLLDSKHLATPIK*NHHLATIIEALLSSSPLR-IGTY-IW*DCLIYLTI 375
I E LL +K TP++ NH L AL ++S LR G Y LIYLTI
Sbjct: 275 ISEAGLLGAKLAGTPLEQNHKL-----ALAANSDLRDPGQYRRLVGXLIYLTI 322
>emb|CAN83721.1| hypothetical protein VITISV_003961 [Vitis vinifera]
Length = 1101
Score = 59.7 bits (143), Expect = 4e-07
Identities = 28/70 (40%), Positives = 45/70 (64%)
Frame = +2
Query: 14 HRSFLYVLIYGDDLIVFGSELAVNSIFTFYLNNYFLIEDLKHLKYFLDIEVTRNAFGLYL 193
H +++Y DD++V G++L YL+ F ++DL HLKYFL IEV+R++ G++L
Sbjct: 774 HGKITTLIVYVDDMVVTGNDLEERKALQNYLSREFEMKDLGHLKYFLGIEVSRSSEGIFL 833
Query: 194 FLRKYN*DII 223
RKY D++
Sbjct: 834 SQRKYALDLL 843