BLASTX nr result
ID: Catharanthus22_contig00035612
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Catharanthus22_contig00035612
(445 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|EOY17541.1| RING/U-box superfamily protein, putative [Theobro... 96 4e-18
ref|XP_004229698.1| PREDICTED: RING-H2 finger protein ATL73-like... 87 3e-15
ref|XP_006489746.1| PREDICTED: RING-H2 finger protein ATL16-like... 84 1e-14
ref|XP_006420199.1| hypothetical protein CICLE_v10005261mg [Citr... 84 1e-14
ref|XP_004159030.1| PREDICTED: RING-H2 finger protein ATL60-like... 82 6e-14
ref|XP_004141825.1| PREDICTED: RING-H2 finger protein ATL60-like... 82 6e-14
ref|XP_002891772.1| zinc finger family protein [Arabidopsis lyra... 82 6e-14
ref|NP_001275269.1| ACRE 132-like protein [Solanum tuberosum] gi... 82 7e-14
ref|XP_006354621.1| PREDICTED: RING-H2 finger protein ATL73-like... 82 1e-13
ref|XP_002281024.2| PREDICTED: RING-H2 finger protein ATL16-like... 82 1e-13
emb|CAN69298.1| hypothetical protein VITISV_043412 [Vitis vinifera] 82 1e-13
ref|XP_006342886.1| PREDICTED: RING-H2 finger protein ATL60-like... 81 1e-13
emb|CAN83231.1| hypothetical protein VITISV_018480 [Vitis vinifera] 81 1e-13
gb|AFK35896.1| unknown [Lotus japonicus] 81 2e-13
gb|EXB64653.1| RING-H2 finger protein ATL3 [Morus notabilis] 80 2e-13
ref|NP_175785.1| RING-H2 finger protein ATL60 [Arabidopsis thali... 80 3e-13
ref|XP_003529860.1| PREDICTED: RING-H2 finger protein ATL3-like ... 80 3e-13
emb|CBI23610.3| unnamed protein product [Vitis vinifera] 80 3e-13
ref|NP_001237079.1| uncharacterized protein LOC100500375 [Glycin... 80 3e-13
ref|XP_002326884.1| predicted protein [Populus trichocarpa] 80 3e-13
>gb|EOY17541.1| RING/U-box superfamily protein, putative [Theobroma cacao]
Length = 158
Score = 96.3 bits (238), Expect = 4e-18
Identities = 45/88 (51%), Positives = 57/88 (64%)
Frame = -1
Query: 364 YCTVCLNEMNKGEKYRLLPNCHHCFHVDCIDVWFRSKSTCPLCRRNVSQLITSRQNQKRG 185
YC+VCL E GE+ R LP C+HCFHVDCID WF+++ TCPLCR VS + RQNQ+
Sbjct: 73 YCSVCLYEAEDGERLRRLPRCNHCFHVDCIDTWFQNRPTCPLCRNEVS--VRRRQNQRGL 130
Query: 184 FSFNFVSSSQDFFLRKICNPLNPELTLL 101
FS +S Q+ F + PLN TL+
Sbjct: 131 FSSIILSILQNLFRKMSSRPLNFTSTLI 158
>ref|XP_004229698.1| PREDICTED: RING-H2 finger protein ATL73-like [Solanum lycopersicum]
Length = 131
Score = 86.7 bits (213), Expect = 3e-15
Identities = 42/95 (44%), Positives = 58/95 (61%)
Frame = -1
Query: 379 TTAAMYCTVCLNEMNKGEKYRLLPNCHHCFHVDCIDVWFRSKSTCPLCRRNVSQLITSRQ 200
T A YC VCL ++ GE R LP C H FHV+C+D W +S TCPLCRR V+
Sbjct: 38 TDEARYCAVCLYDVISGENCRKLPKCGHVFHVECVDAWLQSNRTCPLCRRQVT------- 90
Query: 199 NQKRGFSFNFVSSSQDFFLRKICNPLNPELTLLMT 95
+Q RG + +S ++DF L KI NP+ +T+L++
Sbjct: 91 DQGRGET--VISRAEDFILEKIYNPITEIVTVLVS 123
>ref|XP_006489746.1| PREDICTED: RING-H2 finger protein ATL16-like [Citrus sinensis]
Length = 358
Score = 84.3 bits (207), Expect = 1e-14
Identities = 39/105 (37%), Positives = 58/105 (55%), Gaps = 15/105 (14%)
Frame = -1
Query: 361 CTVCLNEMNKGEKYRLLPNCHHCFHVDCIDVWFRSKSTCPLCRRNVSQLIT--------- 209
C VCLNE + EK R++PNC H FH+DCIDVW +S + CPLCR ++S T
Sbjct: 131 CAVCLNEFQENEKLRIIPNCGHVFHIDCIDVWLQSNANCPLCRTSISSTTTTPTTFLPFD 190
Query: 208 ------SRQNQKRGFSFNFVSSSQDFFLRKICNPLNPELTLLMTE 92
S ++ N ++S +DF + ++ N + + TLL T+
Sbjct: 191 RIIAPSSTPQDPSPYTENVINSDEDFVVIELGNHHSTDQTLLATQ 235
>ref|XP_006420199.1| hypothetical protein CICLE_v10005261mg [Citrus clementina]
gi|557522072|gb|ESR33439.1| hypothetical protein
CICLE_v10005261mg [Citrus clementina]
Length = 358
Score = 84.3 bits (207), Expect = 1e-14
Identities = 39/105 (37%), Positives = 58/105 (55%), Gaps = 15/105 (14%)
Frame = -1
Query: 361 CTVCLNEMNKGEKYRLLPNCHHCFHVDCIDVWFRSKSTCPLCRRNVSQLIT--------- 209
C VCLNE + EK R++PNC H FH+DCIDVW +S + CPLCR ++S T
Sbjct: 131 CAVCLNEFQENEKLRIIPNCGHVFHIDCIDVWLQSNANCPLCRTSISSTTTTPTTFLPFD 190
Query: 208 ------SRQNQKRGFSFNFVSSSQDFFLRKICNPLNPELTLLMTE 92
S ++ N ++S +DF + ++ N + + TLL T+
Sbjct: 191 RIIAPSSTPQDPSPYTENVINSDEDFVVIELGNHHSTDQTLLATQ 235
>ref|XP_004159030.1| PREDICTED: RING-H2 finger protein ATL60-like [Cucumis sativus]
Length = 267
Score = 82.4 bits (202), Expect = 6e-14
Identities = 39/64 (60%), Positives = 48/64 (75%), Gaps = 3/64 (4%)
Frame = -1
Query: 361 CTVCLNEMNKGEKYRLLPNCHHCFHVDCIDVWFRSKSTCPLCRRNVSQLIT---SRQNQK 191
C VCL+E+++GEK RLLP C+H FHVDCID+WF+S STCPLCR V+ IT S QN +
Sbjct: 100 CAVCLSELSEGEKARLLPRCNHGFHVDCIDMWFKSNSTCPLCRNPVA--ITEPNSEQNPE 157
Query: 190 RGFS 179
G S
Sbjct: 158 TGSS 161
>ref|XP_004141825.1| PREDICTED: RING-H2 finger protein ATL60-like [Cucumis sativus]
Length = 262
Score = 82.4 bits (202), Expect = 6e-14
Identities = 39/64 (60%), Positives = 48/64 (75%), Gaps = 3/64 (4%)
Frame = -1
Query: 361 CTVCLNEMNKGEKYRLLPNCHHCFHVDCIDVWFRSKSTCPLCRRNVSQLIT---SRQNQK 191
C VCL+E+++GEK RLLP C+H FHVDCID+WF+S STCPLCR V+ IT S QN +
Sbjct: 100 CAVCLSELSEGEKARLLPRCNHGFHVDCIDMWFKSNSTCPLCRNPVA--ITEPNSEQNPE 157
Query: 190 RGFS 179
G S
Sbjct: 158 TGSS 161
>ref|XP_002891772.1| zinc finger family protein [Arabidopsis lyrata subsp. lyrata]
gi|297337614|gb|EFH68031.1| zinc finger family protein
[Arabidopsis lyrata subsp. lyrata]
Length = 320
Score = 82.4 bits (202), Expect = 6e-14
Identities = 41/92 (44%), Positives = 55/92 (59%), Gaps = 10/92 (10%)
Frame = -1
Query: 397 VATGTETTAAMYCTVCLNEMNKGEKYRLLPNCHHCFHVDCIDVWFRSKSTCPLCRRNV-- 224
V T+ + C VCL+E+ G+K R+LP C+H FHVDCID+WF+S STCPLCR V
Sbjct: 103 VFKSTDFKDGLECAVCLSELVDGDKARVLPRCNHGFHVDCIDMWFQSHSTCPLCRNTVGS 162
Query: 223 --------SQLITSRQNQKRGFSFNFVSSSQD 152
S+ + QN + G S N ++SQD
Sbjct: 163 VEETIHGGSEGLPQNQNFESGHSSNQHNTSQD 194
>ref|NP_001275269.1| ACRE 132-like protein [Solanum tuberosum]
gi|118490013|gb|ABK96800.1| ACRE 132-like protein
[Solanum tuberosum]
Length = 262
Score = 82.0 bits (201), Expect = 7e-14
Identities = 33/53 (62%), Positives = 45/53 (84%)
Frame = -1
Query: 361 CTVCLNEMNKGEKYRLLPNCHHCFHVDCIDVWFRSKSTCPLCRRNVSQLITSR 203
C+VCL+E+ +GEK RLLP C+H FHVDCID+WF+S STCPLCR VS++ +++
Sbjct: 103 CSVCLSEVCEGEKARLLPKCNHGFHVDCIDMWFQSHSTCPLCRNPVSEMSSTK 155
>ref|XP_006354621.1| PREDICTED: RING-H2 finger protein ATL73-like [Solanum tuberosum]
Length = 131
Score = 81.6 bits (200), Expect = 1e-13
Identities = 38/94 (40%), Positives = 54/94 (57%)
Frame = -1
Query: 379 TTAAMYCTVCLNEMNKGEKYRLLPNCHHCFHVDCIDVWFRSKSTCPLCRRNVSQLITSRQ 200
T YC VCL ++ GE R LP C H FH +C+D W + TCPLCRR V+
Sbjct: 38 TDKGRYCAVCLYDVISGENCRKLPKCGHVFHAECVDTWLQRNRTCPLCRREVT------- 90
Query: 199 NQKRGFSFNFVSSSQDFFLRKICNPLNPELTLLM 98
+Q+RG + +S ++DF L I NP+ +T+L+
Sbjct: 91 DQRRGET--VISRAEDFILESIYNPITEMVTILV 122
>ref|XP_002281024.2| PREDICTED: RING-H2 finger protein ATL16-like [Vitis vinifera]
Length = 359
Score = 81.6 bits (200), Expect = 1e-13
Identities = 37/97 (38%), Positives = 58/97 (59%), Gaps = 10/97 (10%)
Frame = -1
Query: 361 CTVCLNEMNKGEKYRLLPNCHHCFHVDCIDVWFRSKSTCPLCRRNVS--------QLI-- 212
C VCLNE + EK R++PNC H FH+DCIDVW +S + CPLCR ++S Q+I
Sbjct: 138 CAVCLNEFQEEEKLRIIPNCSHIFHIDCIDVWLQSNANCPLCRTSISTTPRFPVHQIIAP 197
Query: 211 TSRQNQKRGFSFNFVSSSQDFFLRKICNPLNPELTLL 101
+S ++ N++ +DF + ++ N + + +LL
Sbjct: 198 SSSPQDPSPYANNYIGGDEDFVVIELGNDSSADSSLL 234
>emb|CAN69298.1| hypothetical protein VITISV_043412 [Vitis vinifera]
Length = 419
Score = 81.6 bits (200), Expect = 1e-13
Identities = 37/97 (38%), Positives = 58/97 (59%), Gaps = 10/97 (10%)
Frame = -1
Query: 361 CTVCLNEMNKGEKYRLLPNCHHCFHVDCIDVWFRSKSTCPLCRRNVS--------QLI-- 212
C VCLNE + EK R++PNC H FH+DCIDVW +S + CPLCR ++S Q+I
Sbjct: 198 CAVCLNEFQEEEKLRIIPNCSHIFHIDCIDVWLQSNANCPLCRTSISTTPRFPVHQIIAP 257
Query: 211 TSRQNQKRGFSFNFVSSSQDFFLRKICNPLNPELTLL 101
+S ++ N++ +DF + ++ N + + +LL
Sbjct: 258 SSSPQDPSPYANNYIGGDEDFVVIELGNDSSADSSLL 294
>ref|XP_006342886.1| PREDICTED: RING-H2 finger protein ATL60-like [Solanum tuberosum]
Length = 261
Score = 81.3 bits (199), Expect = 1e-13
Identities = 32/53 (60%), Positives = 44/53 (83%)
Frame = -1
Query: 361 CTVCLNEMNKGEKYRLLPNCHHCFHVDCIDVWFRSKSTCPLCRRNVSQLITSR 203
C+VCL +++ GEK RLLP C+H FHVDCID+WF+S STCPLCR VS++ +++
Sbjct: 102 CSVCLTDVSDGEKARLLPKCNHGFHVDCIDMWFQSHSTCPLCRNPVSEMSSTK 154
>emb|CAN83231.1| hypothetical protein VITISV_018480 [Vitis vinifera]
Length = 357
Score = 81.3 bits (199), Expect = 1e-13
Identities = 42/102 (41%), Positives = 59/102 (57%)
Frame = -1
Query: 379 TTAAMYCTVCLNEMNKGEKYRLLPNCHHCFHVDCIDVWFRSKSTCPLCRRNVSQLITSRQ 200
T +YC VCL + +GE+ R LP+C HCFHV CID WF++ STCPLCR V S
Sbjct: 57 THXZIYCVVCLCDAVEGERLRRLPDCKHCFHVGCIDAWFQAHSTCPLCRSQV-----SLP 111
Query: 199 NQKRGFSFNFVSSSQDFFLRKICNPLNPELTLLMTENLQGMR 74
++++ F+ S K NPL E+ L + ++L G+R
Sbjct: 112 HRRQPTLFSHFLSLLKLIANKFGNPLCLEIPLALCDSL-GLR 152
>gb|AFK35896.1| unknown [Lotus japonicus]
Length = 286
Score = 80.9 bits (198), Expect = 2e-13
Identities = 32/47 (68%), Positives = 41/47 (87%)
Frame = -1
Query: 361 CTVCLNEMNKGEKYRLLPNCHHCFHVDCIDVWFRSKSTCPLCRRNVS 221
C VCL+E+++GEK RLLP C+H FHVDCID+WF+S STCPLCR +V+
Sbjct: 99 CAVCLSELDEGEKARLLPKCNHGFHVDCIDMWFQSHSTCPLCRTSVA 145
>gb|EXB64653.1| RING-H2 finger protein ATL3 [Morus notabilis]
Length = 299
Score = 80.5 bits (197), Expect = 2e-13
Identities = 33/52 (63%), Positives = 42/52 (80%)
Frame = -1
Query: 361 CTVCLNEMNKGEKYRLLPNCHHCFHVDCIDVWFRSKSTCPLCRRNVSQLITS 206
C VCL+E+ GEK RLLP C+H FHVDCID+WF+S +TCPLCR +VS + +S
Sbjct: 112 CAVCLSELVNGEKARLLPKCNHGFHVDCIDMWFQSHATCPLCRNSVSPVSSS 163
>ref|NP_175785.1| RING-H2 finger protein ATL60 [Arabidopsis thaliana]
gi|68565093|sp|P0C035.1|ATL60_ARATH RecName:
Full=RING-H2 finger protein ATL60
gi|67633458|gb|AAY78653.1| zinc finger (C3HC4-type RING
finger) family protein [Arabidopsis thaliana]
gi|332194885|gb|AEE33006.1| RING-H2 finger protein ATL60
[Arabidopsis thaliana]
Length = 310
Score = 80.1 bits (196), Expect = 3e-13
Identities = 39/88 (44%), Positives = 53/88 (60%), Gaps = 10/88 (11%)
Frame = -1
Query: 385 TETTAAMYCTVCLNEMNKGEKYRLLPNCHHCFHVDCIDVWFRSKSTCPLCRRNV------ 224
T+ + C VCL+++ G+K R+LP C+H FHVDCID+WF+S STCPLCR V
Sbjct: 112 TDFKDGLECAVCLSDLVDGDKARVLPRCNHGFHVDCIDMWFQSHSTCPLCRNTVGSVEDT 171
Query: 223 ----SQLITSRQNQKRGFSFNFVSSSQD 152
S+ + QN + G S N + SQD
Sbjct: 172 THGGSEGLPQNQNFESGHSTNQHNPSQD 199
>ref|XP_003529860.1| PREDICTED: RING-H2 finger protein ATL3-like [Glycine max]
Length = 314
Score = 80.1 bits (196), Expect = 3e-13
Identities = 38/71 (53%), Positives = 48/71 (67%)
Frame = -1
Query: 361 CTVCLNEMNKGEKYRLLPNCHHCFHVDCIDVWFRSKSTCPLCRRNVSQLITSRQNQKRGF 182
C VCL+E+ +GEK RLLP C+H FHVDCID+WF S STCPLCR V+ S + ++
Sbjct: 109 CAVCLSEIVQGEKLRLLPKCNHGFHVDCIDMWFHSHSTCPLCRNPVA--FESSKCEESNV 166
Query: 181 SFNFVSSSQDF 149
S N SSS +
Sbjct: 167 SGNSDSSSSSY 177
>emb|CBI23610.3| unnamed protein product [Vitis vinifera]
Length = 194
Score = 80.1 bits (196), Expect = 3e-13
Identities = 35/70 (50%), Positives = 46/70 (65%)
Frame = -1
Query: 361 CTVCLNEMNKGEKYRLLPNCHHCFHVDCIDVWFRSKSTCPLCRRNVSQLITSRQNQKRGF 182
C VCLNE + EK R++PNC H FH+DCIDVW +S + CPLCR ++S T R K+
Sbjct: 45 CAVCLNEFQEEEKLRIIPNCSHIFHIDCIDVWLQSNANCPLCRTSIS--TTPRIVPKKAR 102
Query: 181 SFNFVSSSQD 152
F+ V+S D
Sbjct: 103 KFHHVASMGD 112
>ref|NP_001237079.1| uncharacterized protein LOC100500375 [Glycine max]
gi|255630157|gb|ACU15432.1| unknown [Glycine max]
Length = 144
Score = 80.1 bits (196), Expect = 3e-13
Identities = 33/77 (42%), Positives = 49/77 (63%), Gaps = 3/77 (3%)
Frame = -1
Query: 364 YCTVCLNEMNKGEKYRLLPNCHHCFHVDCIDVWFRSKSTCPLCRRNVSQLITSRQNQKRG 185
YC+VCL+++ KGEK + LP C+H +HVDCI W ++ +TCPLCR N++ IT + Q +
Sbjct: 49 YCSVCLSQICKGEKAKSLPVCNHRYHVDCIGAWLKNHTTCPLCRNNITDHITQKHKQVKS 108
Query: 184 FS---FNFVSSSQDFFL 143
FN + S D +
Sbjct: 109 LGESLFNLIQSFSDLLV 125
>ref|XP_002326884.1| predicted protein [Populus trichocarpa]
Length = 144
Score = 80.1 bits (196), Expect = 3e-13
Identities = 38/71 (53%), Positives = 46/71 (64%), Gaps = 1/71 (1%)
Frame = -1
Query: 364 YCTVCLNEMNKGEKYRLLPNCHHCFHVDCIDVWFRSKSTCPLCRRNV-SQLITSRQNQKR 188
YC VCL+E+ GE+ R L C HCFHV CID WF+S STCPLCR V + QN+KR
Sbjct: 70 YCVVCLHEVVDGERLRKLLKCKHCFHVACIDAWFQSHSTCPLCRNQVLLRHDHQHQNEKR 129
Query: 187 GFSFNFVSSSQ 155
F+F+S Q
Sbjct: 130 CLFFHFLSFLQ 140