BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Catharanthus22_contig00035190
         (370 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|BAA22288.1| polyprotein [Oryza australiensis]                      74   2e-11
gb|AAV85747.1| Integrase core domain, putative [Oryza sativa Jap...    72   6e-11
gb|ADB85429.1| putative retrotransposon protein [Phyllostachys e...    69   6e-10
gb|ABF97393.1| retrotransposon protein, putative, Ty1-copia subc...    67   2e-09
gb|AAR06328.1| putative polyprotein [Oryza sativa Japonica Group]      67   2e-09
gb|ABF97213.1| retrotransposon protein, putative, Ty1-copia subc...    65   9e-09
gb|AAS01945.1| putative polyprotein [Oryza sativa Japonica Group]      65   9e-09
emb|CAE04999.2| OSJNBb0093G06.7 [Oryza sativa Japonica Group]          62   6e-08
gb|ABA96688.1| retrotransposon protein, putative, Ty1-copia subc...    59   9e-07
ref|XP_006388485.1| hypothetical protein POPTR_0174s00220g, part...    58   1e-06
gb|ADJ18449.1| gag/pol protein [Bryonia dioica]                        57   3e-06
gb|EXB35423.1| Retrovirus-related Pol polyprotein from transposo...    56   4e-06
gb|EXC27155.1| Retrovirus-related Pol polyprotein from transposo...    56   6e-06
gb|EXC14254.1| hypothetical protein L484_021752 [Morus notabilis]      56   6e-06

>dbj|BAA22288.1| polyprotein [Oryza australiensis]
          Length = 1317

 Score = 74.3 bits (181), Expect = 2e-11
 Identities = 45/126 (35%), Positives = 66/126 (52%), Gaps = 6/126 (4%)
 Frame = +3

Query: 3   NMEKSINKLHEILKQAEQNIRKSTPNVLMVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 182
           NM++++ +LH +LK  E++I+K+  +V+M+                              
Sbjct: 183 NMDRTLAELHGMLKTVEESIQKNGHHVMMMQNAKRKPPVKKLCTKRKLTPDEIASASNAK 242

Query: 183 XXXXXXXT----CFHCNEPGHWKRNCKLYLEEKKKQKASETAASGIFITEINMST-PT-S 344
                       CF+C E GHWKRNCK Y+E+ KK K S T+ASGI + +IN++T PT S
Sbjct: 243 KGKKGSAASDAVCFYCKETGHWKRNCKKYMEDLKK-KQSTTSASGINVIDINLATSPTDS 301

Query: 345 WVLDTG 362
           WV DTG
Sbjct: 302 WVFDTG 307


>gb|AAV85747.1| Integrase core domain, putative [Oryza sativa Japonica Group]
           gi|62701883|gb|AAX92956.1| retrotransposon protein,
           putative, Ty1-copia sub-class [Oryza sativa Japonica
           Group] gi|108864259|gb|ABA92827.2| retrotransposon
           protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 1184

 Score = 72.4 bits (176), Expect = 6e-11
 Identities = 42/123 (34%), Positives = 65/123 (52%), Gaps = 3/123 (2%)
 Frame = +3

Query: 3   NMEKSINKLHEILKQAEQNIRKSTPNVLMVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 182
           NM +++ KL  +LK AE++I+K++ +V+++                              
Sbjct: 182 NMNRTLTKLPGMLKTAEESIKKNSNHVMVMHKRKPNNKKSGPAKDAE------------- 228

Query: 183 XXXXXXXTCFHCNEPGHWKRNCKLYLEE-KKKQKASETAASGIFITEINMSTPT--SWVL 353
                   CF C E GHWKRNCK YLE+ K+KQ+  +++ SGI + EIN++T +  SWV 
Sbjct: 229 --------CFFCKEAGHWKRNCKKYLEQLKQKQQDGKSSTSGINVIEINLATSSTDSWVF 280

Query: 354 DTG 362
           DTG
Sbjct: 281 DTG 283


>gb|ADB85429.1| putative retrotransposon protein [Phyllostachys edulis]
          Length = 1313

 Score = 68.9 bits (167), Expect = 6e-10
 Identities = 39/126 (30%), Positives = 59/126 (46%), Gaps = 7/126 (5%)
 Frame = +3

Query: 6   MEKSINKLHEILKQAEQNIRKSTPNVLMVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 185
           ++K++ +LH +LK AE +I+K   +V+MV                               
Sbjct: 270 LDKNLTELHMLLKTAEDSIKKINSHVMMVQKSTSFKKKARTWVKGKGKKVLDGIQTNKPK 329

Query: 186 XXXXXXT-----CFHCNEPGHWKRNCKLYLEEKKKQKASETAASGIFITEINM--STPTS 344
                       CF+C EPGHWKRNCK YL + KK   ++ + SGI + ++ +  S+  S
Sbjct: 330 LKTKSGPTQENECFYCKEPGHWKRNCKKYLADLKKNGGTKPSTSGINVIDVLLADSSVNS 389

Query: 345 WVLDTG 362
           WV DTG
Sbjct: 390 WVFDTG 395


>gb|ABF97393.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 1073

 Score = 67.4 bits (163), Expect = 2e-09
 Identities = 40/126 (31%), Positives = 65/126 (51%), Gaps = 6/126 (4%)
 Frame = +3

Query: 3   NMEKSINKLHEILKQAEQNIRKSTPNVLMVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 182
           N+ +++ +LH +LK AE++I+K++ +V+++                              
Sbjct: 274 NLNRTLAELHGMLKTAEESIKKNSNHVMVMHKRKPNNKKSGQKRKLNSDEITSTSNSKTK 333

Query: 183 XXXXXXXT---CFHCNEPGHWKRNCKLYLEE-KKKQKASETAASGIFITEINMSTPT--S 344
                      CF   E GHWKRNCK YLE+ K+KQ+  +++ SGI + EIN++T +  S
Sbjct: 334 VQKTGPAKDAECFFYKETGHWKRNCKKYLEQLKQKQQDGKSSTSGINVIEINLATSSTDS 393

Query: 345 WVLDTG 362
           WV DTG
Sbjct: 394 WVFDTG 399


>gb|AAR06328.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1063

 Score = 67.4 bits (163), Expect = 2e-09
 Identities = 40/126 (31%), Positives = 65/126 (51%), Gaps = 6/126 (4%)
 Frame = +3

Query: 3   NMEKSINKLHEILKQAEQNIRKSTPNVLMVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 182
           N+ +++ +LH +LK AE++I+K++ +V+++                              
Sbjct: 274 NLNRTLAELHGMLKTAEESIKKNSNHVMVMHKRKPNNKKSGQKRKLNSDEITSTSNSKTK 333

Query: 183 XXXXXXXT---CFHCNEPGHWKRNCKLYLEE-KKKQKASETAASGIFITEINMSTPT--S 344
                      CF   E GHWKRNCK YLE+ K+KQ+  +++ SGI + EIN++T +  S
Sbjct: 334 VQKTGPAKDAECFFYKETGHWKRNCKKYLEQLKQKQQDGKSSTSGINVIEINLATSSTDS 393

Query: 345 WVLDTG 362
           WV DTG
Sbjct: 394 WVFDTG 399


>gb|ABF97213.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 1142

 Score = 65.1 bits (157), Expect = 9e-09
 Identities = 39/125 (31%), Positives = 64/125 (51%), Gaps = 6/125 (4%)
 Frame = +3

Query: 3   NMEKSINKLHEILKQAEQNIRKSTPNVLMVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 182
           N+ +++ +LH +LK AE++I+K++ +V+++                              
Sbjct: 234 NLNRTLAELHGMLKTAEESIKKNSNHVMVMHKRKPNNKKSGQKRKLNSDEITSTSNSKTK 293

Query: 183 XXXXXXXT---CFHCNEPGHWKRNCKLYLEE-KKKQKASETAASGIFITEINMSTPT--S 344
                      CF C E GHWKRN K YLE+ K+KQ+  +++ SGI + EIN++T +  S
Sbjct: 294 VQKTGPAKDAECFFCKETGHWKRNYKKYLEQLKQKQQDGKSSTSGINVIEINLATSSTDS 353

Query: 345 WVLDT 359
           WV DT
Sbjct: 354 WVFDT 358


>gb|AAS01945.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1084

 Score = 65.1 bits (157), Expect = 9e-09
 Identities = 39/125 (31%), Positives = 64/125 (51%), Gaps = 6/125 (4%)
 Frame = +3

Query: 3   NMEKSINKLHEILKQAEQNIRKSTPNVLMVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 182
           N+ +++ +LH +LK AE++I+K++ +V+++                              
Sbjct: 161 NLNRTLAELHGMLKTAEESIKKNSNHVMVMHKRKPNNKKSGQKRKLNSDEITSTSNSKTK 220

Query: 183 XXXXXXXT---CFHCNEPGHWKRNCKLYLEE-KKKQKASETAASGIFITEINMSTPT--S 344
                      CF C E GHWKRN K YLE+ K+KQ+  +++ SGI + EIN++T +  S
Sbjct: 221 VQKTGPAKDAECFFCKETGHWKRNYKKYLEQLKQKQQDGKSSTSGINVIEINLATSSTDS 280

Query: 345 WVLDT 359
           WV DT
Sbjct: 281 WVFDT 285


>emb|CAE04999.2| OSJNBb0093G06.7 [Oryza sativa Japonica Group]
          Length = 923

 Score = 62.4 bits (150), Expect = 6e-08
 Identities = 38/123 (30%), Positives = 63/123 (51%), Gaps = 3/123 (2%)
 Frame = +3

Query: 3   NMEKSINKLHEILKQAEQNIRKSTPNVLMVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 182
           N+ +++ +LH +LK AE++I+K++ +V+++                              
Sbjct: 149 NLNRTLIELHGMLKTAEESIKKNSNHVMVMHKRKPNNKKSGQKRKLNSDEITSTRNSKTK 208

Query: 183 XXXXXXXTCFHCNEPGHWKRNCKLYLEE-KKKQKASETAASGIFITEINMSTPT--SWVL 353
                        E GHWKRNCK YLE+ K+KQ+  +++ SGI + EIN++T +  SWV 
Sbjct: 209 VQKTGP-----AKETGHWKRNCKKYLEQLKQKQQNGKSSTSGINVIEINLATSSTDSWVF 263

Query: 354 DTG 362
           DTG
Sbjct: 264 DTG 266


>gb|ABA96688.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 325

 Score = 58.5 bits (140), Expect = 9e-07
 Identities = 35/124 (28%), Positives = 62/124 (50%), Gaps = 6/124 (4%)
 Frame = +3

Query: 6   MEKSINKLHEILKQAEQNIRKSTPNVLMVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 185
           M++++ +L+ +LK AE++I+K++ +V+++                               
Sbjct: 1   MDRTLAELYGMLKTAEESIKKNSNHVMVMHKRKPNNKKTGQKRKLNSDEITSTGNSKTKV 60

Query: 186 XXXXXXT---CFHCNEPGHWKRNCKLYLEE-KKKQKASETAASGIFITEINMSTPT--SW 347
                     CF C E GHWKRNC+ YLE  K+ Q+  +++  GI + EIN++T +  SW
Sbjct: 61  QKTGPAKDTECFFCKETGHWKRNCRKYLEHLKQMQQDGKSSTLGINVIEINLATSSTDSW 120

Query: 348 VLDT 359
           V D+
Sbjct: 121 VFDS 124


>ref|XP_006388485.1| hypothetical protein POPTR_0174s00220g, partial [Populus
           trichocarpa] gi|550310258|gb|ERP47399.1| hypothetical
           protein POPTR_0174s00220g, partial [Populus trichocarpa]
          Length = 245

 Score = 57.8 bits (138), Expect = 1e-06
 Identities = 26/57 (45%), Positives = 37/57 (64%), Gaps = 2/57 (3%)
 Frame = +3

Query: 204 TCFHCNEPGHWKRNCKLYLEEKKKQKASETAASGIFITEINMST--PTSWVLDTGCG 368
           TC H  + G+W++NCK YL   K +K +E +  G+FI E  ++T   +SWVLDT CG
Sbjct: 182 TCHHYGKEGYWRKNCKEYLATVKSKKLNEASTLGMFIVENYLTTLHCSSWVLDTECG 238


>gb|ADJ18449.1| gag/pol protein [Bryonia dioica]
          Length = 1292

 Score = 56.6 bits (135), Expect = 3e-06
 Identities = 24/53 (45%), Positives = 35/53 (66%), Gaps = 1/53 (1%)
 Frame = +3

Query: 207 CFHCNEPGHWKRNCKLYLEEKKKQKASETAASGIFI-TEINMSTPTSWVLDTG 362
           CFHCN+ GHWKRNC  YL EKK +KA++     + + T +     ++W+LD+G
Sbjct: 254 CFHCNQDGHWKRNCPKYLAEKKAEKATQGKYDLLVVETCLVECDASTWILDSG 306


>gb|EXB35423.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Morus
           notabilis]
          Length = 443

 Score = 56.2 bits (134), Expect = 4e-06
 Identities = 26/54 (48%), Positives = 35/54 (64%), Gaps = 2/54 (3%)
 Frame = +3

Query: 207 CFHCNEPGHWKRNCKLYLEEKKKQKASETAASGIFITEINM--STPTSWVLDTG 362
           CFHCN  GHWKRNC  YLEE KK+K  E   S + + EI +     ++W++D+G
Sbjct: 159 CFHCNGEGHWKRNCHKYLEELKKKK--EQGKSDLPVLEICLVEGDTSTWIIDSG 210


>gb|EXC27155.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Morus
           notabilis]
          Length = 391

 Score = 55.8 bits (133), Expect = 6e-06
 Identities = 23/52 (44%), Positives = 32/52 (61%)
 Frame = +3

Query: 207 CFHCNEPGHWKRNCKLYLEEKKKQKASETAASGIFITEINMSTPTSWVLDTG 362
           CFHCN  GHWKRNC  YLEE KK+K    +   +  T +     ++W++D+G
Sbjct: 170 CFHCNGEGHWKRNCHKYLEELKKKKEQGKSDLLVLETCLVEGDTSAWIIDSG 221


>gb|EXC14254.1| hypothetical protein L484_021752 [Morus notabilis]
          Length = 398

 Score = 55.8 bits (133), Expect = 6e-06
 Identities = 23/52 (44%), Positives = 32/52 (61%)
 Frame = +3

Query: 207 CFHCNEPGHWKRNCKLYLEEKKKQKASETAASGIFITEINMSTPTSWVLDTG 362
           CFHCN  GHWKRNC  YLEE KK+K    +   +  T +     ++W++D+G
Sbjct: 261 CFHCNGEGHWKRNCHKYLEELKKKKEQGKSDLLVLETCLVEGDTSAWIIDSG 312