BLASTX nr result
ID: Catharanthus22_contig00034238
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Catharanthus22_contig00034238
(870 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|EOX98803.1| WD-40 repeat family protein / small nuclear ribon... 62 1e-12
ref|XP_004516364.1| PREDICTED: U4/U6 small nuclear ribonucleopro... 64 3e-12
ref|XP_004516365.1| PREDICTED: U4/U6 small nuclear ribonucleopro... 64 3e-12
ref|XP_003535893.1| PREDICTED: U4/U6 small nuclear ribonucleopro... 62 6e-12
ref|XP_006358021.1| PREDICTED: U4/U6 small nuclear ribonucleopro... 62 7e-12
ref|XP_004236572.1| PREDICTED: U4/U6 small nuclear ribonucleopro... 62 7e-12
ref|XP_006491509.1| PREDICTED: U4/U6 small nuclear ribonucleopro... 65 7e-12
ref|XP_004303627.1| PREDICTED: U4/U6 small nuclear ribonucleopro... 64 7e-12
gb|ESW17564.1| hypothetical protein PHAVU_007G249600g [Phaseolus... 62 2e-11
ref|XP_004146749.1| PREDICTED: U4/U6 small nuclear ribonucleopro... 60 2e-11
ref|XP_004162536.1| PREDICTED: U4/U6 small nuclear ribonucleopro... 60 2e-11
ref|XP_002308919.2| transducin family protein [Populus trichocar... 60 3e-11
ref|XP_002530100.1| U4/U6 small nuclear ribonucleoprotein Prp4, ... 62 4e-11
ref|XP_003612223.1| U4/U6 small nuclear ribonucleoprotein PRP4-l... 55 6e-11
gb|EMJ16587.1| hypothetical protein PRUPE_ppa005793mg [Prunus pe... 59 6e-11
ref|XP_003519096.1| PREDICTED: U4/U6 small nuclear ribonucleopro... 61 1e-10
ref|NP_181681.1| splicing factor PRP4-like protein LACHESIS [Ara... 59 2e-10
emb|CAN64891.1| hypothetical protein VITISV_016440 [Vitis vinifera] 58 3e-10
ref|XP_002276914.1| PREDICTED: U4/U6 small nuclear ribonucleopro... 58 3e-10
gb|AAP40506.1| putative small nuclear ribonucleoprotein Prp4p [A... 58 3e-10
>gb|EOX98803.1| WD-40 repeat family protein / small nuclear ribonucleoprotein
Prp4p-related [Theobroma cacao]
Length = 572
Score = 61.6 bits (148), Expect(2) = 1e-12
Identities = 34/73 (46%), Positives = 45/73 (61%), Gaps = 1/73 (1%)
Frame = -1
Query: 438 KGHVELVIIVGFSPNSYHLTSAGEDNS*RVLN-*SQVILVTTPGHSNLIPQLKF*PQEGC 262
+GHV+ V+ V FSPN YHL + GEDN+ R+ + + L P HSNLI Q+KF PQEG
Sbjct: 443 EGHVKPVLGVSFSPNGYHLATGGEDNTCRIWDLRKKKSLYIIPAHSNLISQVKFEPQEGY 502
Query: 261 LLNAGSCGLADKM 223
L S + K+
Sbjct: 503 YLVTASYDMTAKV 515
Score = 38.1 bits (87), Expect(2) = 1e-12
Identities = 16/31 (51%), Positives = 22/31 (70%)
Frame = -3
Query: 226 DGQYVVTISHDPTIKLWPSKGNGCLKTMNID 134
D +Y+VT+SHD TIKLW + G K M++D
Sbjct: 542 DSRYIVTVSHDRTIKLWTAGNIGKEKDMDLD 572
>ref|XP_004516364.1| PREDICTED: U4/U6 small nuclear ribonucleoprotein PRP4-like
protein-like isoform X1 [Cicer arietinum]
Length = 597
Score = 63.5 bits (153), Expect(2) = 3e-12
Identities = 33/73 (45%), Positives = 46/73 (63%), Gaps = 1/73 (1%)
Frame = -1
Query: 438 KGHVELVIIVGFSPNSYHLTSAGEDNS*RVLN-*SQVILVTTPGHSNLIPQLKF*PQEGC 262
+GHV+ ++ + FSPN YHL + GEDN+ R+ + + L T P HSNLI Q+KF PQEG
Sbjct: 469 EGHVKPILGISFSPNGYHLATGGEDNTCRIWDLRKKKSLYTIPAHSNLISQVKFEPQEGY 528
Query: 261 LLNAGSCGLADKM 223
L S + K+
Sbjct: 529 FLVTASYDMTAKV 541
Score = 35.4 bits (80), Expect(2) = 3e-12
Identities = 14/19 (73%), Positives = 16/19 (84%)
Frame = -3
Query: 226 DGQYVVTISHDPTIKLWPS 170
DG Y+VT+SHD TIKLW S
Sbjct: 568 DGGYIVTVSHDRTIKLWSS 586
>ref|XP_004516365.1| PREDICTED: U4/U6 small nuclear ribonucleoprotein PRP4-like
protein-like isoform X2 [Cicer arietinum]
Length = 572
Score = 63.5 bits (153), Expect(2) = 3e-12
Identities = 33/73 (45%), Positives = 46/73 (63%), Gaps = 1/73 (1%)
Frame = -1
Query: 438 KGHVELVIIVGFSPNSYHLTSAGEDNS*RVLN-*SQVILVTTPGHSNLIPQLKF*PQEGC 262
+GHV+ ++ + FSPN YHL + GEDN+ R+ + + L T P HSNLI Q+KF PQEG
Sbjct: 444 EGHVKPILGISFSPNGYHLATGGEDNTCRIWDLRKKKSLYTIPAHSNLISQVKFEPQEGY 503
Query: 261 LLNAGSCGLADKM 223
L S + K+
Sbjct: 504 FLVTASYDMTAKV 516
Score = 35.4 bits (80), Expect(2) = 3e-12
Identities = 14/19 (73%), Positives = 16/19 (84%)
Frame = -3
Query: 226 DGQYVVTISHDPTIKLWPS 170
DG Y+VT+SHD TIKLW S
Sbjct: 543 DGGYIVTVSHDRTIKLWSS 561
>ref|XP_003535893.1| PREDICTED: U4/U6 small nuclear ribonucleoprotein PRP4-like
protein-like [Glycine max]
Length = 570
Score = 62.4 bits (150), Expect(2) = 6e-12
Identities = 33/73 (45%), Positives = 45/73 (61%), Gaps = 1/73 (1%)
Frame = -1
Query: 438 KGHVELVIIVGFSPNSYHLTSAGEDNS*RVLN-*SQVILVTTPGHSNLIPQLKF*PQEGC 262
+GHV+ V+ + FSPN YHL + GEDN+ R+ + + T P HSNLI Q+KF PQEG
Sbjct: 442 EGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKKKSFYTIPAHSNLISQVKFEPQEGY 501
Query: 261 LLNAGSCGLADKM 223
L S + K+
Sbjct: 502 FLVTASYDMTAKV 514
Score = 35.4 bits (80), Expect(2) = 6e-12
Identities = 14/19 (73%), Positives = 16/19 (84%)
Frame = -3
Query: 226 DGQYVVTISHDPTIKLWPS 170
DG Y+VT+SHD TIKLW S
Sbjct: 541 DGGYIVTVSHDRTIKLWSS 559
>ref|XP_006358021.1| PREDICTED: U4/U6 small nuclear ribonucleoprotein PRP4-like
protein-like [Solanum tuberosum]
Length = 583
Score = 62.0 bits (149), Expect(2) = 7e-12
Identities = 35/73 (47%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
Frame = -1
Query: 438 KGHVELVIIVGFSPNSYHLTSAGEDNS*RVLN*SQ-VILVTTPGHSNLIPQLKF*PQEGC 262
+GHV+ V+ V FSPN YHL S GEDN+ R+ + Q P HSNLI Q+KF PQEG
Sbjct: 454 EGHVKPVLGVSFSPNGYHLASGGEDNTCRIWDLRQRRSSYIIPAHSNLISQVKFEPQEGY 513
Query: 261 LLNAGSCGLADKM 223
L S + K+
Sbjct: 514 FLATASYDMTAKV 526
Score = 35.4 bits (80), Expect(2) = 7e-12
Identities = 15/31 (48%), Positives = 22/31 (70%)
Frame = -3
Query: 226 DGQYVVTISHDPTIKLWPSKGNGCLKTMNID 134
DGQ++ T+S+D TIKLW SK + M++D
Sbjct: 553 DGQFITTVSYDRTIKLWSSKNIEKEEKMDMD 583
>ref|XP_004236572.1| PREDICTED: U4/U6 small nuclear ribonucleoprotein PRP4-like
protein-like [Solanum lycopersicum]
Length = 580
Score = 62.0 bits (149), Expect(2) = 7e-12
Identities = 35/73 (47%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
Frame = -1
Query: 438 KGHVELVIIVGFSPNSYHLTSAGEDNS*RVLN*SQ-VILVTTPGHSNLIPQLKF*PQEGC 262
+GHV+ V+ V FSPN YHL S GEDN+ R+ + Q P HSNLI Q+KF PQEG
Sbjct: 451 EGHVKPVLGVSFSPNGYHLASGGEDNTCRIWDLRQRRSSYIIPAHSNLISQVKFEPQEGY 510
Query: 261 LLNAGSCGLADKM 223
L S + K+
Sbjct: 511 FLATASYDMTAKV 523
Score = 35.4 bits (80), Expect(2) = 7e-12
Identities = 15/31 (48%), Positives = 22/31 (70%)
Frame = -3
Query: 226 DGQYVVTISHDPTIKLWPSKGNGCLKTMNID 134
DGQ++ T+S+D TIKLW SK + M++D
Sbjct: 550 DGQFITTVSYDRTIKLWSSKNIEKEEKMDMD 580
>ref|XP_006491509.1| PREDICTED: U4/U6 small nuclear ribonucleoprotein PRP4-like
protein-like [Citrus sinensis]
Length = 579
Score = 65.1 bits (157), Expect(2) = 7e-12
Identities = 35/73 (47%), Positives = 46/73 (63%), Gaps = 1/73 (1%)
Frame = -1
Query: 438 KGHVELVIIVGFSPNSYHLTSAGEDNS*RVLN-*SQVILVTTPGHSNLIPQLKF*PQEGC 262
+GHV+ V+ + FSPN YHL + GEDN+ R+ + + L P HSNLI QLKF PQEG
Sbjct: 450 EGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKRKSLYVIPAHSNLISQLKFEPQEGY 509
Query: 261 LLNAGSCGLADKM 223
L GS + K+
Sbjct: 510 FLVTGSYDMTVKV 522
Score = 32.3 bits (72), Expect(2) = 7e-12
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = -3
Query: 226 DGQYVVTISHDPTIKLWPSKGNGCLKTMNID 134
D Q + T+SHD IKLW ++ G M++D
Sbjct: 549 DEQSIATVSHDRWIKLWSTRNKGDEHAMDVD 579
>ref|XP_004303627.1| PREDICTED: U4/U6 small nuclear ribonucleoprotein PRP4-like
protein-like [Fragaria vesca subsp. vesca]
Length = 511
Score = 63.9 bits (154), Expect(2) = 7e-12
Identities = 33/73 (45%), Positives = 46/73 (63%), Gaps = 1/73 (1%)
Frame = -1
Query: 438 KGHVELVIIVGFSPNSYHLTSAGEDNS*RVLN-*SQVILVTTPGHSNLIPQLKF*PQEGC 262
+GHV+ V+ + FSPN YHL + GEDN+ R+ + + + P HSNLI Q+KF PQEG
Sbjct: 382 EGHVKKVLALSFSPNGYHLATGGEDNTCRIWDLRKKKSIYIIPAHSNLISQVKFEPQEGY 441
Query: 261 LLNAGSCGLADKM 223
L GS + K+
Sbjct: 442 FLVTGSYDMTAKI 454
Score = 33.5 bits (75), Expect(2) = 7e-12
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = -3
Query: 226 DGQYVVTISHDPTIKLWPSKGNGCLKTMNID 134
DG ++ T+SHD TIKLW S + M++D
Sbjct: 481 DGHHIATVSHDRTIKLWSSGTTEKDQEMDVD 511
>gb|ESW17564.1| hypothetical protein PHAVU_007G249600g [Phaseolus vulgaris]
Length = 570
Score = 62.4 bits (150), Expect(2) = 2e-11
Identities = 33/73 (45%), Positives = 45/73 (61%), Gaps = 1/73 (1%)
Frame = -1
Query: 438 KGHVELVIIVGFSPNSYHLTSAGEDNS*RVLN-*SQVILVTTPGHSNLIPQLKF*PQEGC 262
+GHV+ V+ + FSPN YHL + GEDN+ R+ + + T P HSNLI Q+KF PQEG
Sbjct: 442 EGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKKKSFYTIPAHSNLISQVKFEPQEGY 501
Query: 261 LLNAGSCGLADKM 223
L S + K+
Sbjct: 502 FLVTASYDMTAKV 514
Score = 33.5 bits (75), Expect(2) = 2e-11
Identities = 13/19 (68%), Positives = 16/19 (84%)
Frame = -3
Query: 226 DGQYVVTISHDPTIKLWPS 170
DG ++VT+SHD TIKLW S
Sbjct: 541 DGGHIVTVSHDRTIKLWSS 559
>ref|XP_004146749.1| PREDICTED: U4/U6 small nuclear ribonucleoprotein PRP4-like
protein-like [Cucumis sativus]
Length = 569
Score = 60.5 bits (145), Expect(2) = 2e-11
Identities = 32/73 (43%), Positives = 45/73 (61%), Gaps = 1/73 (1%)
Frame = -1
Query: 438 KGHVELVIIVGFSPNSYHLTSAGEDNS*RVLN-*SQVILVTTPGHSNLIPQLKF*PQEGC 262
+GHV+ V+ V FSPN YHL + GEDN+ R+ + + L P HSNL+ Q+K+ PQEG
Sbjct: 441 EGHVKPVLGVSFSPNGYHLATGGEDNTCRIWDLRKKKSLYIIPAHSNLVSQVKYEPQEGY 500
Query: 261 LLNAGSCGLADKM 223
L S + K+
Sbjct: 501 FLVTASFDMTAKI 513
Score = 35.4 bits (80), Expect(2) = 2e-11
Identities = 16/31 (51%), Positives = 23/31 (74%)
Frame = -3
Query: 226 DGQYVVTISHDPTIKLWPSKGNGCLKTMNID 134
DGQ + T+SHD TIKLW S + ++TM++D
Sbjct: 540 DGQCIATVSHDRTIKLW-SVNSKDIQTMDVD 569
>ref|XP_004162536.1| PREDICTED: U4/U6 small nuclear ribonucleoprotein PRP4-like
protein-like [Cucumis sativus]
Length = 568
Score = 60.5 bits (145), Expect(2) = 2e-11
Identities = 32/73 (43%), Positives = 45/73 (61%), Gaps = 1/73 (1%)
Frame = -1
Query: 438 KGHVELVIIVGFSPNSYHLTSAGEDNS*RVLN-*SQVILVTTPGHSNLIPQLKF*PQEGC 262
+GHV+ V+ V FSPN YHL + GEDN+ R+ + + L P HSNL+ Q+K+ PQEG
Sbjct: 440 EGHVKPVLGVSFSPNGYHLATGGEDNTCRIWDLRKKKSLYIIPAHSNLVSQVKYEPQEGY 499
Query: 261 LLNAGSCGLADKM 223
L S + K+
Sbjct: 500 FLVTASFDMTAKI 512
Score = 35.4 bits (80), Expect(2) = 2e-11
Identities = 16/31 (51%), Positives = 23/31 (74%)
Frame = -3
Query: 226 DGQYVVTISHDPTIKLWPSKGNGCLKTMNID 134
DGQ + T+SHD TIKLW S + ++TM++D
Sbjct: 539 DGQCIATVSHDRTIKLW-SVNSKDIQTMDVD 568
>ref|XP_002308919.2| transducin family protein [Populus trichocarpa]
gi|550335445|gb|EEE92442.2| transducin family protein
[Populus trichocarpa]
Length = 574
Score = 60.1 bits (144), Expect(2) = 3e-11
Identities = 31/73 (42%), Positives = 45/73 (61%), Gaps = 1/73 (1%)
Frame = -1
Query: 438 KGHVELVIIVGFSPNSYHLTSAGEDNS*RVLN-*SQVILVTTPGHSNLIPQLKF*PQEGC 262
+GHV+ ++ + FSPN YHL + GEDN+ R+ + + L P HSNL+ Q+KF PQEG
Sbjct: 446 EGHVKPLLGISFSPNGYHLATGGEDNTCRIWDLRKKKSLYVIPAHSNLVSQVKFEPQEGY 505
Query: 261 LLNAGSCGLADKM 223
L S + K+
Sbjct: 506 YLVTSSYDMTAKV 518
Score = 35.0 bits (79), Expect(2) = 3e-11
Identities = 13/22 (59%), Positives = 17/22 (77%)
Frame = -3
Query: 226 DGQYVVTISHDPTIKLWPSKGN 161
DG+ + T+SHD TIKLW S+ N
Sbjct: 545 DGRLIATVSHDRTIKLWSSRSN 566
>ref|XP_002530100.1| U4/U6 small nuclear ribonucleoprotein Prp4, putative [Ricinus
communis] gi|223530411|gb|EEF32299.1| U4/U6 small
nuclear ribonucleoprotein Prp4, putative [Ricinus
communis]
Length = 541
Score = 61.6 bits (148), Expect(2) = 4e-11
Identities = 33/65 (50%), Positives = 44/65 (67%), Gaps = 2/65 (3%)
Frame = -1
Query: 438 KGHVELVIIVGFSPNSYHLTSAGEDNS*RVLN-*SQVILVTTPGHSNLIPQLKF*PQEG- 265
+GHV+ V+ + FSPN YHL + GEDN+ R+ + + L P HSNLI Q+KF PQEG
Sbjct: 414 EGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKKKSLYIIPAHSNLISQVKFEPQEGY 473
Query: 264 CLLNA 250
CL+ A
Sbjct: 474 CLVTA 478
Score = 33.1 bits (74), Expect(2) = 4e-11
Identities = 15/31 (48%), Positives = 20/31 (64%)
Frame = -3
Query: 226 DGQYVVTISHDPTIKLWPSKGNGCLKTMNID 134
DG Y+ T+SHD TIKLW S + M++D
Sbjct: 513 DGCYIATVSHDRTIKLWCSSSK--KEVMDVD 541
>ref|XP_003612223.1| U4/U6 small nuclear ribonucleoprotein PRP4-like protein [Medicago
truncatula] gi|355513558|gb|AES95181.1| U4/U6 small
nuclear ribonucleoprotein PRP4-like protein [Medicago
truncatula]
Length = 488
Score = 55.5 bits (132), Expect(2) = 6e-11
Identities = 31/73 (42%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Frame = -1
Query: 438 KGHVELVIIVGFSPNSYHLTSAGEDNS*RVLN-*SQVILVTTPGHSNLIPQLKF*PQEGC 262
+GHV+ + + FSPN YHL + GEDN+ R+ + L T HS LI Q+KF PQEG
Sbjct: 360 EGHVKPIRGISFSPNGYHLATGGEDNTCRIWDLRKNKSLYTIAAHSKLISQVKFEPQEGY 419
Query: 261 LLNAGSCGLADKM 223
L S + K+
Sbjct: 420 FLVTTSSDMTAKV 432
Score = 38.9 bits (89), Expect(2) = 6e-11
Identities = 18/31 (58%), Positives = 23/31 (74%)
Frame = -3
Query: 226 DGQYVVTISHDPTIKLWPSKGNGCLKTMNID 134
DG Y+VT+SHD TIKLW S G+ TM++D
Sbjct: 459 DGGYIVTVSHDRTIKLW-SSGSTSEHTMDVD 488
>gb|EMJ16587.1| hypothetical protein PRUPE_ppa005793mg [Prunus persica]
Length = 443
Score = 58.5 bits (140), Expect(2) = 6e-11
Identities = 32/73 (43%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
Frame = -1
Query: 438 KGHVELVIIVGFSPNSYHLTSAGEDNS*RVLN-*SQVILVTTPGHSNLIPQLKF*PQEGC 262
+GHV+ V+ + FS N Y+L S GEDN+ R+ + + + P HSNLI Q+KF PQEG
Sbjct: 314 EGHVKKVLALSFSANGYYLASGGEDNTCRIWDLRKKKSIYIIPAHSNLISQVKFEPQEGY 373
Query: 261 LLNAGSCGLADKM 223
L S L K+
Sbjct: 374 FLVTASYDLTTKI 386
Score = 35.8 bits (81), Expect(2) = 6e-11
Identities = 15/31 (48%), Positives = 20/31 (64%)
Frame = -3
Query: 226 DGQYVVTISHDPTIKLWPSKGNGCLKTMNID 134
DG + T+SHD TIKLW S N + M++D
Sbjct: 413 DGHQIATVSHDRTIKLWSSSTNEKDQAMDVD 443
>ref|XP_003519096.1| PREDICTED: U4/U6 small nuclear ribonucleoprotein PRP4-like
protein-like isoform X1 [Glycine max]
gi|571440827|ref|XP_006575267.1| PREDICTED: U4/U6 small
nuclear ribonucleoprotein PRP4-like protein-like isoform
X2 [Glycine max] gi|571440829|ref|XP_006575268.1|
PREDICTED: U4/U6 small nuclear ribonucleoprotein
PRP4-like protein-like isoform X3 [Glycine max]
Length = 570
Score = 61.2 bits (147), Expect(2) = 1e-10
Identities = 32/73 (43%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
Frame = -1
Query: 438 KGHVELVIIVGFSPNSYHLTSAGEDNS*RVLN-*SQVILVTTPGHSNLIPQLKF*PQEGC 262
+GHV+ V+ + FSPN YHL + GEDN+ R+ + + T P HSNLI Q+KF P EG
Sbjct: 442 EGHVKPVLSISFSPNGYHLATGGEDNTCRIWDLRKKKSFYTIPAHSNLISQVKFEPHEGY 501
Query: 261 LLNAGSCGLADKM 223
L S + K+
Sbjct: 502 FLVTASYDMTAKV 514
Score = 32.0 bits (71), Expect(2) = 1e-10
Identities = 13/19 (68%), Positives = 15/19 (78%)
Frame = -3
Query: 226 DGQYVVTISHDPTIKLWPS 170
DG +VT+SHD TIKLW S
Sbjct: 541 DGGSIVTVSHDRTIKLWSS 559
>ref|NP_181681.1| splicing factor PRP4-like protein LACHESIS [Arabidopsis thaliana]
gi|3123130|sp|O22212.1|PRP4_ARATH RecName: Full=U4/U6
small nuclear ribonucleoprotein PRP4-like protein;
AltName: Full=Protein EMBRYO DEFECTIVE 2776
gi|2618685|gb|AAB84332.1| putative small nuclear
ribonucleoprotein Prp4p [Arabidopsis thaliana]
gi|20197202|gb|AAM14969.1| putative small nuclear
ribonucleoprotein Prp4p [Arabidopsis thaliana]
gi|58652074|gb|AAW80862.1| At2g41500 [Arabidopsis
thaliana] gi|330254897|gb|AEC09991.1| splicing factor
PRP4-like protein LACHESIS [Arabidopsis thaliana]
Length = 554
Score = 58.5 bits (140), Expect(2) = 2e-10
Identities = 30/66 (45%), Positives = 40/66 (60%), Gaps = 1/66 (1%)
Frame = -1
Query: 438 KGHVELVIIVGFSPNSYHLTSAGEDNS*RVLN-*SQVILVTTPGHSNLIPQLKF*PQEGC 262
+GH++ V V FSPN YHL S GEDN R+ + + L P H+NL+ Q+K+ PQEG
Sbjct: 420 QGHIKPVFSVNFSPNGYHLASGGEDNQCRIWDLRMRKSLYIIPAHANLVSQVKYEPQEGY 479
Query: 261 LLNAGS 244
L S
Sbjct: 480 FLATAS 485
Score = 33.9 bits (76), Expect(2) = 2e-10
Identities = 17/35 (48%), Positives = 21/35 (60%), Gaps = 4/35 (11%)
Frame = -3
Query: 226 DGQYVVTISHDPTIKLWPSKGNGC----LKTMNID 134
D + T+SHD TIKLW S GN +TM+ID
Sbjct: 519 DSSCIATVSHDRTIKLWTSSGNDDEDEEKETMDID 553
>emb|CAN64891.1| hypothetical protein VITISV_016440 [Vitis vinifera]
Length = 1088
Score = 58.2 bits (139), Expect(2) = 3e-10
Identities = 31/73 (42%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
Frame = -1
Query: 438 KGHVELVIIVGFSPNSYHLTSAGEDNS*RVLN-*SQVILVTTPGHSNLIPQLKF*PQEGC 262
+GHV+ V+ + FSPN YHL + EDN+ R+ + + L P HSNL+ Q+KF PQEG
Sbjct: 959 EGHVKPVLGICFSPNGYHLATGAEDNTCRIWDLRKKKSLYVIPAHSNLVSQVKFEPQEGY 1018
Query: 261 LLNAGSCGLADKM 223
L S + K+
Sbjct: 1019 FLVTASYDMTAKV 1031
Score = 33.9 bits (76), Expect(2) = 3e-10
Identities = 16/31 (51%), Positives = 19/31 (61%)
Frame = -3
Query: 226 DGQYVVTISHDPTIKLWPSKGNGCLKTMNID 134
DG + T+SHD TIKLW S K M+ID
Sbjct: 1058 DGHCIATVSHDRTIKLWSSAEIEKEKAMDID 1088
>ref|XP_002276914.1| PREDICTED: U4/U6 small nuclear ribonucleoprotein PRP4-like
protein-like [Vitis vinifera]
Length = 577
Score = 58.2 bits (139), Expect(2) = 3e-10
Identities = 31/73 (42%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
Frame = -1
Query: 438 KGHVELVIIVGFSPNSYHLTSAGEDNS*RVLN-*SQVILVTTPGHSNLIPQLKF*PQEGC 262
+GHV+ V+ + FSPN YHL + EDN+ R+ + + L P HSNL+ Q+KF PQEG
Sbjct: 448 EGHVKPVLGICFSPNGYHLATGAEDNTCRIWDLRKKKSLYVIPAHSNLVSQVKFEPQEGY 507
Query: 261 LLNAGSCGLADKM 223
L S + K+
Sbjct: 508 FLVTASYDMTAKV 520
Score = 33.9 bits (76), Expect(2) = 3e-10
Identities = 16/31 (51%), Positives = 19/31 (61%)
Frame = -3
Query: 226 DGQYVVTISHDPTIKLWPSKGNGCLKTMNID 134
DG + T+SHD TIKLW S K M+ID
Sbjct: 547 DGHCIATVSHDRTIKLWSSAEIEKEKAMDID 577
>gb|AAP40506.1| putative small nuclear ribonucleoprotein Prp4p [Arabidopsis
thaliana] gi|110738927|dbj|BAF01385.1| putative U4/U6
small nuclear ribonucleoprotein [Arabidopsis thaliana]
Length = 554
Score = 58.2 bits (139), Expect(2) = 3e-10
Identities = 30/66 (45%), Positives = 40/66 (60%), Gaps = 1/66 (1%)
Frame = -1
Query: 438 KGHVELVIIVGFSPNSYHLTSAGEDNS*RVLN-*SQVILVTTPGHSNLIPQLKF*PQEGC 262
+GH++ V V FSPN YHL S GEDN R+ + + L P H+NL+ Q+K+ PQEG
Sbjct: 420 QGHIKPVFPVNFSPNGYHLASGGEDNQCRIWDLRMRKSLYIIPAHANLVSQVKYEPQEGY 479
Query: 261 LLNAGS 244
L S
Sbjct: 480 FLATAS 485
Score = 33.9 bits (76), Expect(2) = 3e-10
Identities = 17/35 (48%), Positives = 21/35 (60%), Gaps = 4/35 (11%)
Frame = -3
Query: 226 DGQYVVTISHDPTIKLWPSKGNGC----LKTMNID 134
D + T+SHD TIKLW S GN +TM+ID
Sbjct: 519 DSSCIATVSHDRTIKLWTSSGNDDEDEEKETMDID 553