BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Catharanthus22_contig00033149
         (239 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAB87099.1| putative retroelement pol polyprotein [Arabidopsi...    58   1e-06

>gb|AAB87099.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1496

 Score = 58.2 bits (139), Expect = 1e-06
 Identities = 33/81 (40%), Positives = 43/81 (53%), Gaps = 6/81 (7%)
 Frame = -2

Query: 226 DRISGMPIGAGEERDGIYYFRHLPKPSNFACSVQHSDLGALWHKRLGHPSKYVI------ 65
           DR     IGAGEER+G+YYF  +  P     S   +  G LWH+RLGHPS  V+      
Sbjct: 461 DRFLRTLIGAGEEREGVYYFTGVLAPRVHKASSDFAISGDLWHRRLGHPSTSVLLSLPEC 520

Query: 64  NKSLGQTINLDFLDNCTICLR 2
           N+S   +   D +D+C  C R
Sbjct: 521 NRS---SQGFDKIDSCDTCFR 538