BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Catharanthus22_contig00032488
         (960 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|EMJ04547.1| hypothetical protein PRUPE_ppa020364mg, partial [...    58   2e-15
gb|ABD28505.2| RNA-directed DNA polymerase (Reverse transcriptas...    54   4e-13
gb|EMJ10020.1| hypothetical protein PRUPE_ppa025050mg [Prunus pe...    59   5e-11
emb|CCA65997.1| hypothetical protein [Beta vulgaris subsp. vulga...    55   3e-10
gb|ABK28199.1| unknown [Arabidopsis thaliana]                          64   4e-10
gb|ABE65462.1| hypothetical protein At2g27870 [Arabidopsis thali...    64   4e-10
gb|AAD21515.1| putative reverse transcriptase [Arabidopsis thali...    64   4e-10
ref|XP_006469101.1| PREDICTED: putative ribonuclease H protein A...    71   7e-10
gb|AAF23831.1|AC007234_3 F1E22.12 [Arabidopsis thaliana]               71   7e-10
sp|P0C2F6.1|RNHX1_ARATH RecName: Full=Putative ribonuclease H pr...    71   7e-10
gb|EMJ09149.1| hypothetical protein PRUPE_ppa017250mg, partial [...    52   2e-09
gb|EMJ27819.1| hypothetical protein PRUPE_ppa022893mg, partial [...    50   2e-09
gb|EOY02864.1| Ribonuclease H protein [Theobroma cacao]                69   3e-09
gb|EMJ20361.1| hypothetical protein PRUPE_ppa016360mg, partial [...    52   5e-09
gb|EOY02505.1| RNA-binding (RRM/RBD/RNP motifs) family protein i...    64   1e-08
dbj|BAE79382.1| unnamed protein product [Ipomoea batatas]              67   1e-08
dbj|BAE79384.1| unnamed protein product [Ipomoea batatas]              66   2e-08
ref|XP_006492639.1| PREDICTED: putative ribonuclease H protein A...    65   3e-08
dbj|BAE79385.1| unnamed protein product [Ipomoea batatas]              65   4e-08
gb|AAF97302.1|AC007843_5 Hypothetical protein [Arabidopsis thali...    60   5e-08

>gb|EMJ04547.1| hypothetical protein PRUPE_ppa020364mg, partial [Prunus persica]
          Length = 295

 Score = 58.2 bits (139), Expect(3) = 2e-15
 Identities = 37/105 (35%), Positives = 51/105 (48%), Gaps = 5/105 (4%)
 Frame = -2

Query: 545 SKVAKEVGWTPPPPGWHKLNTXXXXXXXXXXXXXXGVLRNSLGQWEQSYSRNLGRTNNSA 366
           +KV   + W PP  G  KLN               GVLR+ LGQW   ++ NLG+     
Sbjct: 119 NKVQVLLAWVPPEIGVVKLNIDGSCRGSTGAIDAGGVLRDHLGQWIAGFAVNLGQGEVLD 178

Query: 365 SELWGLRDGLAFAKSLNIQKLEIEIDATLV-----SNLVNQLHPD 246
           +ELWGL  GL  A   N+  + IE+D+  V     S ++N  HP+
Sbjct: 179 AELWGLFFGLNLAVEKNLDDIVIEMDSDTVMLLIESKVLNDCHPN 223



 Score = 40.8 bits (94), Expect(3) = 2e-15
 Identities = 23/57 (40%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
 Frame = -1

Query: 765 TDFLQWLRFGCSSTKLFDKFRIPWNTIFSFTYWTLWRQRNKGIF-NDTPTISDPREL 598
           TDF  WL     S   F +  IPW  +F F  W +W+ RN  IF N+T    +PR+L
Sbjct: 45  TDFHPWLLNNLCSKAHFAQ--IPWRILFVFICWYIWKWRNDFIFKNETDLPFNPRDL 99



 Score = 30.4 bits (67), Expect(3) = 2e-15
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -3

Query: 244 DTHPFFSIFSDCR*MMTTFAEFRVSHIYRRQTCV 143
           D HP   + S C+ +M  F   ++ HIYR +  V
Sbjct: 219 DCHPNAGLVSSCKRLMNLFRRIKLQHIYRERNDV 252


>gb|ABD28505.2| RNA-directed DNA polymerase (Reverse transcriptase);
           Polynucleotidyl transferase, Ribonuclease H fold
           [Medicago truncatula]
          Length = 729

 Score = 53.5 bits (127), Expect(3) = 4e-13
 Identities = 29/91 (31%), Positives = 46/91 (50%)
 Frame = -2

Query: 527 VGWTPPPPGWHKLNTXXXXXXXXXXXXXXGVLRNSLGQWEQSYSRNLGRTNNSASELWGL 348
           +GW  PP GW KLN               G+LR+S G+W + Y + +G  +   +E+WG+
Sbjct: 626 IGWMRPPFGWVKLNCDGAWKGSGTLAGCGGLLRDSDGRWIKGYFKKIGMCDAFHAEMWGM 685

Query: 347 RDGLAFAKSLNIQKLEIEIDATLVSNLVNQL 255
             GL  A   N   L +E D+ ++S L + +
Sbjct: 686 YLGLDMAWRENTTHLIVESDSKILSLLFDDI 716



 Score = 36.6 bits (83), Expect(3) = 4e-13
 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
 Frame = -2

Query: 953 FLWLTARERLPTKHLLLPGKIEVDPKT--CQKEEEDVSHILKDCPIARPTWTAL 798
           F+WL A  R+ T +      + + P    C +E+E V H+L+DC  +   W  L
Sbjct: 479 FIWLAAHGRILTNYRRSKWGVGISPTCPCCAREDETVIHVLRDCVHSTQVWLRL 532



 Score = 31.2 bits (69), Expect(3) = 4e-13
 Identities = 12/21 (57%), Positives = 12/21 (57%)
 Frame = -1

Query: 696 WNTIFSFTYWTLWRQRNKGIF 634
           W T F  T W LW  RNK IF
Sbjct: 566 WQTTFMTTCWYLWNWRNKSIF 586


>gb|EMJ10020.1| hypothetical protein PRUPE_ppa025050mg [Prunus persica]
          Length = 241

 Score = 59.3 bits (142), Expect(3) = 5e-11
 Identities = 43/133 (32%), Positives = 64/133 (48%), Gaps = 7/133 (5%)
 Frame = -2

Query: 626 PQPSPIQESLNRAKEFATLDLG*VSVPSKVAKEV---GWTPPPPGWHKLNTXXXXXXXXX 456
           P P+P    L  AKE+  ++     V  K+A+EV    W+PP     KLN          
Sbjct: 40  PPPNPHHIILQFAKEWFDINK---MVNGKLAREVIQIHWSPPTAAISKLNADGSYKTTSW 96

Query: 455 XXXXXGVLRNSLGQWEQSYSRNLGRTNNSASELWGLRDGLAFAKSLNIQKLEIEID---- 288
                G+LR+S G W   +S N+G  N +  ELW L  GL  A +  I+ L++E D    
Sbjct: 97  KITTGGLLRDSHGSWICGFSVNIGIGNIAKGELWSLLKGLQMAWNRGIRSLDVECDFLYV 156

Query: 287 ATLVSNLVNQLHP 249
            +L++ + +Q HP
Sbjct: 157 VSLMAKVSDQSHP 169



 Score = 28.5 bits (62), Expect(3) = 5e-11
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = -3

Query: 241 THPFFSIFSDCR*MMTTFAEFRVSHIYRRQ 152
           +HP   +  DC+ ++      ++SH+YR Q
Sbjct: 167 SHPLLCLIEDCKSLLNRDWSCKISHVYREQ 196



 Score = 26.6 bits (57), Expect(3) = 5e-11
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -1

Query: 702 IPWNTIFSFTYWTLWRQRNKGIFN 631
           +PW  +F+ T W  W+ R    FN
Sbjct: 12  LPWVLVFTATIWHCWKWRCISTFN 35


>emb|CCA65997.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1363

 Score = 55.5 bits (132), Expect(3) = 3e-10
 Identities = 30/86 (34%), Positives = 44/86 (51%)
 Frame = -2

Query: 521  WTPPPPGWHKLNTXXXXXXXXXXXXXXGVLRNSLGQWEQSYSRNLGRTNNSASELWGLRD 342
            W PP  G+ KLNT              GV R+++G WE  +++ +   +  A+EL  +R+
Sbjct: 1198 WKPPHQGFLKLNTDGAWKADWENAGIGGVFRDAVGNWELGFAKRVDAGSPEAAELMAIRE 1257

Query: 341  GLAFAKSLNIQKLEIEIDATLVSNLV 264
            GL  A   N  KLE+E DA  V  L+
Sbjct: 1258 GLQVAWDCNYHKLEVECDAKGVVQLL 1283



 Score = 28.1 bits (61), Expect(3) = 3e-10
 Identities = 15/53 (28%), Positives = 22/53 (41%), Gaps = 2/53 (3%)
 Frame = -2

Query: 959  KHFLWLTARERLPTKHLLLPGKIEVDPK--TCQKEEEDVSHILKDCPIARPTW 807
            K  +W      LPT   L       +P+   C    ED+ H+ +DC +A   W
Sbjct: 1051 KLLIWNGIHNILPTALFLAKRIHNFNPQCVACDHPIEDMIHLFRDCCVASSVW 1103



 Score = 27.7 bits (60), Expect(3) = 3e-10
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -1

Query: 696  WNTIFSFTYWTLWRQRNKGIF 634
            W T F+  +W +W  RNK +F
Sbjct: 1137 WVTKFTTAFWHIWCSRNKTVF 1157


>gb|ABK28199.1| unknown [Arabidopsis thaliana]
          Length = 315

 Score = 63.9 bits (154), Expect(3) = 4e-10
 Identities = 33/102 (32%), Positives = 52/102 (50%), Gaps = 4/102 (3%)
 Frame = -2

Query: 542 KVAKEVGWTPPPPGWHKLNTXXXXXXXXXXXXXXGVLRNSLGQWEQSYSRNLGRTNNSAS 363
           +V + + W+ P  GW KLNT              GVLR+  G W   ++ N+G  +   +
Sbjct: 139 RVERLIAWSKPEEGWWKLNTDGASRGNPGLASAGGVLRDEEGAWRGGFALNIGVCSAPLA 198

Query: 362 ELWGLRDGLAFAKSLNIQKLEIEIDATLVSNL----VNQLHP 249
           ELWG+  GL  A    + +LEIE+D+ +V       +N++HP
Sbjct: 199 ELWGVYYGLYIAWERRVTRLEIEVDSEIVVGFLKIGINEVHP 240



 Score = 26.2 bits (56), Expect(3) = 4e-10
 Identities = 15/48 (31%), Positives = 21/48 (43%), Gaps = 7/48 (14%)
 Frame = -1

Query: 756 LQWL-------RFGCSSTKLFDKFRIPWNTIFSFTYWTLWRQRNKGIF 634
           L+WL       R  C ST         W+T+F+ + W  W+ R   IF
Sbjct: 64  LEWLFANLGDRRKTCEST---------WSTLFALSIWWAWKWRCGNIF 102



 Score = 21.2 bits (43), Expect(3) = 4e-10
 Identities = 8/29 (27%), Positives = 14/29 (48%)
 Frame = -3

Query: 244 DTHPFFSIFSDCR*MMTTFAEFRVSHIYR 158
           + HP   +   C   ++     R+SH+YR
Sbjct: 237 EVHPLSFLVRLCHDFISRDWRVRISHVYR 265


>gb|ABE65462.1| hypothetical protein At2g27870 [Arabidopsis thaliana]
          Length = 314

 Score = 63.9 bits (154), Expect(3) = 4e-10
 Identities = 33/102 (32%), Positives = 52/102 (50%), Gaps = 4/102 (3%)
 Frame = -2

Query: 542 KVAKEVGWTPPPPGWHKLNTXXXXXXXXXXXXXXGVLRNSLGQWEQSYSRNLGRTNNSAS 363
           +V + + W+ P  GW KLNT              GVLR+  G W   ++ N+G  +   +
Sbjct: 139 RVERLIAWSKPEEGWWKLNTDGASRGNPGLASAGGVLRDEEGAWRGGFALNIGVCSAPLA 198

Query: 362 ELWGLRDGLAFAKSLNIQKLEIEIDATLVSNL----VNQLHP 249
           ELWG+  GL  A    + +LEIE+D+ +V       +N++HP
Sbjct: 199 ELWGVYYGLYIAWERRVTRLEIEVDSEIVVGFLKIXINEVHP 240



 Score = 26.2 bits (56), Expect(3) = 4e-10
 Identities = 15/48 (31%), Positives = 21/48 (43%), Gaps = 7/48 (14%)
 Frame = -1

Query: 756 LQWL-------RFGCSSTKLFDKFRIPWNTIFSFTYWTLWRQRNKGIF 634
           L+WL       R  C ST         W+T+F+ + W  W+ R   IF
Sbjct: 64  LEWLFANLGDRRKTCEST---------WSTLFALSIWWAWKWRCGNIF 102



 Score = 21.2 bits (43), Expect(3) = 4e-10
 Identities = 8/29 (27%), Positives = 14/29 (48%)
 Frame = -3

Query: 244 DTHPFFSIFSDCR*MMTTFAEFRVSHIYR 158
           + HP   +   C   ++     R+SH+YR
Sbjct: 237 EVHPLSFLVRLCHDFISRDWRVRISHVYR 265


>gb|AAD21515.1| putative reverse transcriptase [Arabidopsis thaliana]
           gi|20197456|gb|AAM15081.1| putative reverse
           transcriptase [Arabidopsis thaliana]
          Length = 314

 Score = 63.9 bits (154), Expect(3) = 4e-10
 Identities = 33/102 (32%), Positives = 52/102 (50%), Gaps = 4/102 (3%)
 Frame = -2

Query: 542 KVAKEVGWTPPPPGWHKLNTXXXXXXXXXXXXXXGVLRNSLGQWEQSYSRNLGRTNNSAS 363
           +V + + W+ P  GW KLNT              GVLR+  G W   ++ N+G  +   +
Sbjct: 139 RVERLIAWSKPEEGWWKLNTDGASRGNPGLASAGGVLRDEEGAWRGGFALNIGVCSAPLA 198

Query: 362 ELWGLRDGLAFAKSLNIQKLEIEIDATLVSNL----VNQLHP 249
           ELWG+  GL  A    + +LEIE+D+ +V       +N++HP
Sbjct: 199 ELWGVYYGLYIAWERRVTRLEIEVDSEIVVGFLKIGINEVHP 240



 Score = 26.2 bits (56), Expect(3) = 4e-10
 Identities = 15/48 (31%), Positives = 21/48 (43%), Gaps = 7/48 (14%)
 Frame = -1

Query: 756 LQWL-------RFGCSSTKLFDKFRIPWNTIFSFTYWTLWRQRNKGIF 634
           L+WL       R  C ST         W+T+F+ + W  W+ R   IF
Sbjct: 64  LEWLFANLGDRRKTCEST---------WSTLFALSIWWAWKWRCGNIF 102



 Score = 21.2 bits (43), Expect(3) = 4e-10
 Identities = 8/29 (27%), Positives = 14/29 (48%)
 Frame = -3

Query: 244 DTHPFFSIFSDCR*MMTTFAEFRVSHIYR 158
           + HP   +   C   ++     R+SH+YR
Sbjct: 237 EVHPLSFLVRLCHDFISRDWRVRISHVYR 265


>ref|XP_006469101.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus
            sinensis]
          Length = 684

 Score = 70.9 bits (172), Expect = 7e-10
 Identities = 66/245 (26%), Positives = 105/245 (42%), Gaps = 13/245 (5%)
 Frame = -2

Query: 953  FLWLTARERLPTKHLL----LPGKIEVDPKTCQKEEEDVSHILKDCPIARPTWTALDTVW 786
            FLW     +L TK  L    +P  I +  + C    EDV H+L+DC      W  L    
Sbjct: 396  FLWQALHAKLKTKEELSRRHIP--ISIGCERCGAPIEDVIHVLRDCQCIMRVWLRL---- 449

Query: 785  TPSQTHGQTSYNGYGLAVPRLSCLISSEYLGTPS-FPSLIGL------YGGNETRASLTT 627
             P++ H   S+    L     + L +   + +PS +  + G+      +  N        
Sbjct: 450  VPARNH--LSFFQSTLRDWITANLQNKWKIASPSTWECIFGVAIWRLWFWRNHFMVDGKL 507

Query: 626  PQPSPIQESLN-RAKEFATLDLG*VSV-PSKVAKEVGWTPPPPGWHKLNTXXXXXXXXXX 453
               S I   +  RA E   L+   +S  P +    +GW PPP  W KLNT          
Sbjct: 508  TDSSTIYLDITARANEIHKLNNSHISQQPRRKEIFIGWIPPPWPWCKLNTDGSCRKSEGA 567

Query: 452  XXXXGVLRNSLGQWEQSYSRNLGRTNNSASELWGLRDGLAFAKSLNIQKLEIEIDATLVS 273
                 +LR+S+G W   +  N+G ++   +ELWGL  GL  A    I+ L +E+D+  V+
Sbjct: 568  GAGG-ILRDSVGHWISGFCLNIGESSVLMAELWGLYQGLRIAWDTGIKCLLVEVDSLCVT 626

Query: 272  NLVNQ 258
             ++++
Sbjct: 627  QMISK 631


>gb|AAF23831.1|AC007234_3 F1E22.12 [Arabidopsis thaliana]
          Length = 1055

 Score = 70.9 bits (172), Expect = 7e-10
 Identities = 72/291 (24%), Positives = 122/291 (41%), Gaps = 17/291 (5%)
 Frame = -2

Query: 959  KHFLWLTARERLPT------KHLLLPGKIEVDPKTCQKEEEDVSHILKDCPIARPTWTAL 798
            K FLWL   + + T      +HL      +V    C+   E + H+L+DCP     W   
Sbjct: 410  KTFLWLVGNQAVMTEEERHRRHLSASNVCQV----CKGGVESMLHVLRDCPAQLGIWVR- 464

Query: 797  DTVWTPSQTHGQTSYNGYGLAVPRLSCLISSEYLGTPSFPSLIGLYGGNETRASLTTPQP 618
              V    +  G  S + +      L      E +   +  ++I ++ G + R      + 
Sbjct: 465  --VVPQRRQQGFFSKSLFEWLYDNLGDRSGCEDIPWSTIFAVI-IWWGWKWRCGNIFGEN 521

Query: 617  SPIQESLNRAKEFAT----LDLG*VSV---PSKVAKEVGWTPPPPGWHKLNTXXXXXXXX 459
            +  ++ +   KE+A        G V V     +V + +GW  P  GW K+NT        
Sbjct: 522  TKCRDRVKFVKEWAVEVYRAHSGNVLVGITQPRVERMIGWVSPCVGWVKVNTDGASRGNP 581

Query: 458  XXXXXXGVLRNSLGQWEQSYSRNLGRTNNSASELWGLRDGLAFAKSLNIQKLEIEIDATL 279
                  GVLR+  G W   +S N+GR +   +ELWG+  GL FA    + ++E+E+D+ +
Sbjct: 582  GLASAGGVLRDCTGAWCGGFSLNIGRCSAPQAELWGVYYGLYFAWEKKVPRVELEVDSEV 641

Query: 278  VSNL----VNQLHPDRYSSFFLYFL*LQVNDDYICRV*GITYLPEANMCAD 138
            +       ++  HP    SF +      +  D++ R+  +    EAN  AD
Sbjct: 642  IVGFLKTGISDSHP---LSFLVRLCHGFLQKDWLVRI--VHVYREANRLAD 687


>sp|P0C2F6.1|RNHX1_ARATH RecName: Full=Putative ribonuclease H protein At1g65750
          Length = 620

 Score = 70.9 bits (172), Expect = 7e-10
 Identities = 72/291 (24%), Positives = 122/291 (41%), Gaps = 17/291 (5%)
 Frame = -2

Query: 959  KHFLWLTARERLPT------KHLLLPGKIEVDPKTCQKEEEDVSHILKDCPIARPTWTAL 798
            K FLWL   + + T      +HL      +V    C+   E + H+L+DCP     W   
Sbjct: 301  KTFLWLVGNQAVMTEEERHRRHLSASNVCQV----CKGGVESMLHVLRDCPAQLGIWVR- 355

Query: 797  DTVWTPSQTHGQTSYNGYGLAVPRLSCLISSEYLGTPSFPSLIGLYGGNETRASLTTPQP 618
              V    +  G  S + +      L      E +   +  ++I ++ G + R      + 
Sbjct: 356  --VVPQRRQQGFFSKSLFEWLYDNLGDRSGCEDIPWSTIFAVI-IWWGWKWRCGNIFGEN 412

Query: 617  SPIQESLNRAKEFAT----LDLG*VSV---PSKVAKEVGWTPPPPGWHKLNTXXXXXXXX 459
            +  ++ +   KE+A        G V V     +V + +GW  P  GW K+NT        
Sbjct: 413  TKCRDRVKFVKEWAVEVYRAHSGNVLVGITQPRVERMIGWVSPCVGWVKVNTDGASRGNP 472

Query: 458  XXXXXXGVLRNSLGQWEQSYSRNLGRTNNSASELWGLRDGLAFAKSLNIQKLEIEIDATL 279
                  GVLR+  G W   +S N+GR +   +ELWG+  GL FA    + ++E+E+D+ +
Sbjct: 473  GLASAGGVLRDCTGAWCGGFSLNIGRCSAPQAELWGVYYGLYFAWEKKVPRVELEVDSEV 532

Query: 278  VSNL----VNQLHPDRYSSFFLYFL*LQVNDDYICRV*GITYLPEANMCAD 138
            +       ++  HP    SF +      +  D++ R+  +    EAN  AD
Sbjct: 533  IVGFLKTGISDSHP---LSFLVRLCHGFLQKDWLVRI--VHVYREANRLAD 578


>gb|EMJ09149.1| hypothetical protein PRUPE_ppa017250mg, partial [Prunus persica]
          Length = 219

 Score = 52.4 bits (124), Expect(3) = 2e-09
 Identities = 32/102 (31%), Positives = 49/102 (48%)
 Frame = -2

Query: 557 VSVPSKVAKEVGWTPPPPGWHKLNTXXXXXXXXXXXXXXGVLRNSLGQWEQSYSRNLGRT 378
           +S  ++V   + W PP  G  KLN               G++R+S G W   ++ NLG  
Sbjct: 108 ISKRTQVQIMLAWEPPVNGVFKLNVDGSRKGGIGCIGAGGIIRDSFGDWMCGFAVNLGIG 167

Query: 377 NNSASELWGLRDGLAFAKSLNIQKLEIEIDATLVSNLVNQLH 252
               +ELWGL  GL  A +  + +L IE+D+     L+ +LH
Sbjct: 168 QTLDTELWGLFFGLKLAAAKAVARLSIEMDSMTAVQLI-KLH 208



 Score = 32.7 bits (73), Expect(3) = 2e-09
 Identities = 16/47 (34%), Positives = 21/47 (44%)
 Frame = -1

Query: 786 DAVTDPWTDFLQWLRFGCSSTKLFDKFRIPWNTIFSFTYWTLWRQRN 646
           DA      DF  WL     S  ++     PW  +F FT W +W+ RN
Sbjct: 52  DAARFLQADFKAWLFSNLCSKSVYG--HQPWPVVFVFTCWFIWKWRN 96



 Score = 23.5 bits (49), Expect(3) = 2e-09
 Identities = 14/46 (30%), Positives = 20/46 (43%)
 Frame = -2

Query: 944 LTARERLPTKHLLLPGKIEVDPKTCQKEEEDVSHILKDCPIARPTW 807
           + + E+   +HL L    +     C    E V HIL+DC   R  W
Sbjct: 3   ILSNEQRVRRHLTLDSSCQC----CGWPIECVLHILRDCFKVREVW 44


>gb|EMJ27819.1| hypothetical protein PRUPE_ppa022893mg, partial [Prunus persica]
          Length = 177

 Score = 50.4 bits (119), Expect(3) = 2e-09
 Identities = 28/92 (30%), Positives = 46/92 (50%)
 Frame = -2

Query: 530 EVGWTPPPPGWHKLNTXXXXXXXXXXXXXXGVLRNSLGQWEQSYSRNLGRTNNSASELWG 351
           ++ W  P  G  K+N+              GVLR++ G W + YS  LG  +   +ELWG
Sbjct: 71  QLSWNRPSLGGCKINSDGSRNNTADQIGAAGVLRDATGAWLKGYSVKLGTGSVLEAELWG 130

Query: 350 LRDGLAFAKSLNIQKLEIEIDATLVSNLVNQL 255
           +  GL+ A     + +E+E D+ +  +L+N L
Sbjct: 131 IFWGLSLAWDYGFRTVEVESDSKVAVDLLNSL 162



 Score = 35.4 bits (80), Expect(3) = 2e-09
 Identities = 12/36 (33%), Positives = 25/36 (69%), Gaps = 1/36 (2%)
 Frame = -1

Query: 702 IPWNTIFSFTYWTLWRQRNKGIFNDTPTIS-DPREL 598
           +PW+ IF+ + W +W+ R +G+F+   T+  +PR++
Sbjct: 11  LPWHLIFTLSLWFIWKWRCRGVFDQNFTMPVEPRQI 46



 Score = 22.7 bits (47), Expect(3) = 2e-09
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -3

Query: 262 INCIQIDTHPFFSIFS 215
           +N + I THP FSI +
Sbjct: 159 LNSLTISTHPLFSIIN 174


>gb|EOY02864.1| Ribonuclease H protein [Theobroma cacao]
          Length = 660

 Score = 68.9 bits (167), Expect = 3e-09
 Identities = 65/255 (25%), Positives = 106/255 (41%), Gaps = 20/255 (7%)
 Frame = -2

Query: 953  FLWLTARERLPTKHLLLPGKIEVDP--KTCQKEEEDVSHILKDCPIARPTWTALDTVWTP 780
            FL+     RL T    L  ++  D     C+ E+E V+H+L+DC +A   W  +      
Sbjct: 340  FLFQCLHGRLLTNRERLHRQLTTDSLCPQCRMEDETVTHVLRDCMVATSLWVKI------ 393

Query: 779  SQTHGQTSYNGYGLAVPRLSCLISSEYLGTPSFPSLIGLY--------GGNETRASLTTP 624
               H Q  +  + L    +S L   + +    +  + GL          G    A+    
Sbjct: 394  IPQHEQNDFFTFPLREWLVSNLQKQQLILGNPWSVVFGLACWCLWKWRNGVVFYAAF--- 450

Query: 623  QPSPIQESLNRAKEFATL------DLG*VSVPSKVAKEV--GWTPPPPGWHKLNTXXXXX 468
              +P ++ ++  K  AT       D   V V  +  +EV  GW  P  GW  LNT     
Sbjct: 451  --NPTRKRISMIKSMATATIATSADFDGVQVERRKKEEVLIGWRTPQVGWVCLNTDEAYK 508

Query: 467  XXXXXXXXXGVLRNSLGQWEQSYSRNLGRTNNSASELWGLRDGLAFAKSLNIQKLEIEID 288
                     GV+RN+ G W+  +   LG+ +   +ELWG+  GL  A     +K+++++D
Sbjct: 509  RSIEEASTGGVIRNAEGDWQAEFLAKLGKCSAYRAELWGVLHGLRLAWDSGFKKVQVQVD 568

Query: 287  ATLVSNLV--NQLHP 249
              +V   V  N+L P
Sbjct: 569  NKMVVPAVSTNKLIP 583


>gb|EMJ20361.1| hypothetical protein PRUPE_ppa016360mg, partial [Prunus persica]
          Length = 217

 Score = 52.4 bits (124), Expect(3) = 5e-09
 Identities = 33/105 (31%), Positives = 51/105 (48%), Gaps = 4/105 (3%)
 Frame = -2

Query: 551 VPSKVAKEVGWTPPPPGWHKLNTXXXXXXXXXXXXXXGVLRNSLGQWEQSYSRNLGRTNN 372
           +P +    + W  P PG  K+NT              G+LR+S G W + +S NLG  + 
Sbjct: 98  LPERSVVLLHWMAPLPGVCKVNTDGSRINSSGFIGAGGLLRDSCGNWIKGFSVNLGFGSV 157

Query: 371 SASELWGLRDGLAFAKSLNIQKLEIEIDAT----LVSNLVNQLHP 249
             +ELWG+  GL+ A     + +EIE D+T    L+ + +   HP
Sbjct: 158 IEAELWGIFWGLSMAWDAGFRTVEIECDSTSAVALLKSPIVSTHP 202



 Score = 33.5 bits (75), Expect(3) = 5e-09
 Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
 Frame = -1

Query: 762 DFLQWLRFGCSSTKLFDKFRIPWNTIFSFTYWTLWRQRNKGIFNDT-PTISDPREL 598
           DF  WL    +S + F    +PW  +F+   W  W+ R K +F+   P  +DP  L
Sbjct: 26  DFDDWLLHNLNSRR-FVAHGLPWYLVFAIFLWFTWKWRCKVVFDQNFPLPADPHLL 80



 Score = 21.6 bits (44), Expect(3) = 5e-09
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -3

Query: 247 IDTHPFFSIFSDC 209
           + THP FSI + C
Sbjct: 198 VSTHPLFSIINCC 210


>gb|EOY02505.1| RNA-binding (RRM/RBD/RNP motifs) family protein isoform 1
           [Theobroma cacao] gi|508710609|gb|EOY02506.1|
           RNA-binding (RRM/RBD/RNP motifs) family protein isoform
           1 [Theobroma cacao]
          Length = 344

 Score = 64.3 bits (155), Expect(2) = 1e-08
 Identities = 31/87 (35%), Positives = 47/87 (54%)
 Frame = -2

Query: 524 GWTPPPPGWHKLNTXXXXXXXXXXXXXXGVLRNSLGQWEQSYSRNLGRTNNSASELWGLR 345
           GW  PP G+ KLN+              G++RN  G+W   YSR LG+  ++ +E WGLR
Sbjct: 62  GWELPPRGFFKLNSGGSSAADPGKAGAGGIIRNDQGEWNVGYSRKLGQATSTCAEHWGLR 121

Query: 344 DGLAFAKSLNIQKLEIEIDATLVSNLV 264
           DGL  A    +  + I++D  +V +L+
Sbjct: 122 DGLQLAVKRGLFDVIIKVDLQVVLDLI 148



 Score = 22.3 bits (46), Expect(2) = 1e-08
 Identities = 9/34 (26%), Positives = 14/34 (41%)
 Frame = -3

Query: 247 IDTHPFFSIFSDCR*MMTTFAEFRVSHIYRRQTC 146
           +D+H    I  +CR ++      R   I R   C
Sbjct: 153 VDSHTLGPIIKECRSLLEQIPNHRFCQINRDSNC 186


>dbj|BAE79382.1| unnamed protein product [Ipomoea batatas]
          Length = 1366

 Score = 66.6 bits (161), Expect = 1e-08
 Identities = 71/267 (26%), Positives = 108/267 (40%), Gaps = 13/267 (4%)
 Frame = -2

Query: 872  CQKEEEDVSHILKDCPIARPTWTALDTVWTPSQTHGQTSYNGYGLAVPRLSCLISSEYLG 693
            C +E+E + H+ + C +A   W +      P  T  QTS + +  +  + +C  S +  G
Sbjct: 1081 CGEEDETLDHLFRRCLLAEACWDSA----VPPLTF-QTSNHLHMHSWMKAACS-SQQKDG 1134

Query: 692  TPSFPSLIGLY-------GGNETRASLTTPQPSPI-QESLNRAKEFATLDLG*VSVPSKV 537
              +  SLI  Y         N          PS I   S   + E   L      + +  
Sbjct: 1135 YSTNWSLIFPYILWNLWKARNRLVFDNNITAPSDILNRSFMESSEARCLLAKRTGLQTAF 1194

Query: 536  AKEVGWTPPPPGWHKLNTXXXXXXXXXXXXXXGVLRNSLGQWEQSYSRNLGRTNNSASEL 357
               V W+PP  G+ KLN+              G+LRN  G W   Y+ N+G  N+  +EL
Sbjct: 1195 QTWVVWSPPAAGFTKLNSDGACKSHSHLASAGGLLRNENGLWVAGYTCNIGTANSFLAEL 1254

Query: 356  WGLRDGLAFAKSLNIQKLEIEIDATLVSNLVNQLHPDRYSSFFLYFL*LQVND-----DY 192
            WGLR+GL  AK+    KL  E D+  V  ++ +  P    +  L      V D     D+
Sbjct: 1255 WGLREGLLLAKNRGFTKLIAETDSEAVVQVLRKDGPVTPDASIL------VKDCKLLLDH 1308

Query: 191  ICRV*GITYLPEANMCADAAKHEGAAT 111
               +     L E N CAD   + G ++
Sbjct: 1309 FQEIKVTHILREGNQCADFLANLGQSS 1335


>dbj|BAE79384.1| unnamed protein product [Ipomoea batatas]
          Length = 1898

 Score = 66.2 bits (160), Expect = 2e-08
 Identities = 71/267 (26%), Positives = 108/267 (40%), Gaps = 13/267 (4%)
 Frame = -2

Query: 872  CQKEEEDVSHILKDCPIARPTWTALDTVWTPSQTHGQTSYNGYGLAVPRLSCLISSEYLG 693
            C +E+E + H+ + C +A   W +      P  T  QTS + +  +  + +C  S +  G
Sbjct: 1613 CGEEDETLDHLFRRCLLAEACWDSA----VPPLTF-QTSNHLHMHSWMKAACS-SQQKDG 1666

Query: 692  TPSFPSLIGLY-------GGNETRASLTTPQPSPI-QESLNRAKEFATLDLG*VSVPSKV 537
              +  SLI  Y         N          PS I   S   + E   L      + +  
Sbjct: 1667 YGTNWSLIFPYILWNLWKARNRLVFDNNITAPSDILNRSFMESSEARCLLAKRTGLQTAF 1726

Query: 536  AKEVGWTPPPPGWHKLNTXXXXXXXXXXXXXXGVLRNSLGQWEQSYSRNLGRTNNSASEL 357
               V W+PP  G+ KLN+              G+LRN  G W   Y+ N+G  N+  +EL
Sbjct: 1727 QTWVVWSPPAAGFTKLNSDGACKSHSHLASAGGLLRNENGLWVAGYTCNIGTANSFLAEL 1786

Query: 356  WGLRDGLAFAKSLNIQKLEIEIDATLVSNLVNQLHPDRYSSFFLYFL*LQVND-----DY 192
            WGLR+GL  AK+    KL  E D+  V  ++ +  P    +  L      V D     D+
Sbjct: 1787 WGLREGLLLAKNRGFTKLIAETDSEAVVQVLRKDGPVTPDASIL------VKDCKLLLDH 1840

Query: 191  ICRV*GITYLPEANMCADAAKHEGAAT 111
               +     L E N CAD   + G ++
Sbjct: 1841 FQEIKVTHILREGNQCADFLANLGQSS 1867


>ref|XP_006492639.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus
           sinensis]
          Length = 569

 Score = 65.5 bits (158), Expect = 3e-08
 Identities = 58/242 (23%), Positives = 99/242 (40%), Gaps = 10/242 (4%)
 Frame = -2

Query: 953 FLWLTARERLPTKHLLLPGKIEVDPKT--CQKEEEDVSHILKDCPIARPTWTALDTVWTP 780
           FLW    +RL TK  L    I V      C    ED  H+L+DC + +  W  +     P
Sbjct: 188 FLWQVFHDRLKTKAELARRHIPVSTSCDRCGAVNEDAMHVLRDCALVKLFWLLI----LP 243

Query: 779 SQTHGQTSYNGYGLAVPRLSCLISSEYLGTPSFPSLIGL------YGGNETRASLTTPQP 618
           +    Q  +N       R +  I        ++    G+      +  N+   +  +  P
Sbjct: 244 ANKR-QQFFNSRLQEWLRTNVGIVGRLGSVSNWAIFFGIALWRLWFWRNQFFFNQASMDP 302

Query: 617 SPI-QESLNRAKEFATLDLG*VSVPS-KVAKEVGWTPPPPGWHKLNTXXXXXXXXXXXXX 444
           + +  + L R  E   +    ++    +V + + W PP   W  LNT             
Sbjct: 303 NVVLMDVLTRTAEMHKIHTHPLTTGHIRVTRWISWKPPDWPWCSLNTDGAHNRGGTSTAW 362

Query: 443 XGVLRNSLGQWEQSYSRNLGRTNNSASELWGLRDGLAFAKSLNIQKLEIEIDATLVSNLV 264
             ++R+ +G+W   +   +G  + + +ELWGL  GL  A +  I+KL++EID+  V  LV
Sbjct: 363 G-LIRDHMGRWLSGFGMMIGSCSITVAELWGLYQGLQLAWNSGIRKLQVEIDSLCVLQLV 421

Query: 263 NQ 258
            +
Sbjct: 422 TK 423


>dbj|BAE79385.1| unnamed protein product [Ipomoea batatas]
          Length = 1366

 Score = 65.1 bits (157), Expect = 4e-08
 Identities = 71/267 (26%), Positives = 107/267 (40%), Gaps = 13/267 (4%)
 Frame = -2

Query: 872  CQKEEEDVSHILKDCPIARPTWTALDTVWTPSQTHGQTSYNGYGLAVPRLSCLISSEYLG 693
            C +E+E + H+ + C +A   W +      P  T  QTS + +  +  + +C  S +  G
Sbjct: 1081 CGEEDETLDHLFRRCLLAEACWDSA----VPPLTF-QTSNHLHMHSWMKAACS-SQQKDG 1134

Query: 692  TPSFPSLIGLY-------GGNETRASLTTPQPSPI-QESLNRAKEFATLDLG*VSVPSKV 537
              +  SLI  Y         N          PS I   S   + E   L      + +  
Sbjct: 1135 YGTNWSLIFPYILWNLWKARNRLVFDNNITAPSDILNRSFMESSEARCLLAKRTGLQTAF 1194

Query: 536  AKEVGWTPPPPGWHKLNTXXXXXXXXXXXXXXGVLRNSLGQWEQSYSRNLGRTNNSASEL 357
               V W+PP  G+ KLN+              G+LRN  G W   Y  N+G  N+  +EL
Sbjct: 1195 QTWVVWSPPAAGFTKLNSDGACKSHSHLASAGGLLRNENGLWVAGYICNIGTANSFLAEL 1254

Query: 356  WGLRDGLAFAKSLNIQKLEIEIDATLVSNLVNQLHPDRYSSFFLYFL*LQVND-----DY 192
            WGLR+GL  AK+    KL  E D+  V  ++ +  P    +  L      V D     D+
Sbjct: 1255 WGLREGLLLAKNRGFTKLIAETDSEAVVQVLRKDGPVTPDASIL------VKDCKLLLDH 1308

Query: 191  ICRV*GITYLPEANMCADAAKHEGAAT 111
               +     L E N CAD   + G ++
Sbjct: 1309 FQEIKVTHILREGNQCADFLANLGQSS 1335


>gb|AAF97302.1|AC007843_5 Hypothetical protein [Arabidopsis thaliana]
           gi|55978717|gb|AAV68820.1| hypothetical protein
           AT1G17390 [Arabidopsis thaliana]
          Length = 272

 Score = 60.5 bits (145), Expect(2) = 5e-08
 Identities = 36/114 (31%), Positives = 55/114 (48%), Gaps = 3/114 (2%)
 Frame = -2

Query: 557 VSVPSKVAKE---VGWTPPPPGWHKLNTXXXXXXXXXXXXXXGVLRNSLGQWEQSYSRNL 387
           + V ++ A+E   + W+PP  GW KLNT              GV+R+  G W   +S N+
Sbjct: 89  MGVTTRTAREERLIAWSPPRVGWFKLNTDGASRGNPRLATAGGVVRDGDGNWCYGFSLNI 148

Query: 386 GRTNNSASELWGLRDGLAFAKSLNIQKLEIEIDATLVSNLVNQLHPDRYSSFFL 225
           G  +   +ELWG   GL  A    + +LE+EID+ +V   +     D +   FL
Sbjct: 149 GICSAPLAELWGAYYGLNIAWERGVTQLEMEIDSEMVVGFLRTGIDDSHPLSFL 202



 Score = 24.3 bits (51), Expect(2) = 5e-08
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = -3

Query: 244 DTHPFFSIFSDCR*MMTTFAEFRVSHIYR 158
           D+HP   +   C  +++     R+SH+YR
Sbjct: 195 DSHPLSFLVRLCHGLLSKDWSVRISHVYR 223