BLASTX nr result
ID: Catharanthus22_contig00031796
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Catharanthus22_contig00031796
(333 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis] 55 3e-14
gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|1337118... 45 1e-11
gb|AAF19226.1|AC007505_2 Highly similar to Ta1-3 polyprotein [Ar... 55 2e-10
emb|CAA31653.1| polyprotein [Arabidopsis thaliana] 56 2e-10
gb|AAD19773.1| putative retroelement pol polyprotein [Arabidopsi... 50 2e-10
emb|CAN61272.1| hypothetical protein VITISV_039063 [Vitis vinifera] 45 4e-10
gb|AAL31093.1|AC091749_22 putative retrotransposon-related prote... 45 5e-10
emb|CAA20201.1| putative transposable element [Arabidopsis thali... 54 7e-10
gb|ABA96191.1| retrotransposon protein, putative, Ty1-copia subc... 45 7e-10
emb|CAH65740.1| OSIGBa0127D24.3 [Oryza sativa Indica Group] 40 7e-10
gb|AAP54315.2| retrotransposon protein, putative, Ty1-copia subc... 41 9e-10
gb|AAM91886.1| putative polyprotein [Oryza sativa Japonica Group] 41 9e-10
gb|AAT01387.1| putative polyprotein [Oryza sativa Japonica Group... 45 9e-10
gb|ABA91380.1| retrotransposon protein, putative, Ty1-copia subc... 42 9e-10
gb|AAK38381.1|AC079028_5 polyprotein, putative [Arabidopsis thal... 58 9e-10
ref|NP_001172143.1| Os01g0116166 [Oryza sativa Japonica Group] g... 41 1e-09
gb|AAP53216.2| retrotransposon protein, putative, Ty1-copia subc... 41 2e-09
gb|AAT44282.1| putative polyprotein [Oryza sativa Japonica Group] 41 2e-09
gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group] 41 2e-09
gb|AAM08562.1|AC092749_15 Putative retroelement [Oryza sativa Ja... 41 2e-09
>emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis]
Length = 1334
Score = 54.7 bits (130), Expect(3) = 3e-14
Identities = 24/48 (50%), Positives = 33/48 (68%)
Frame = -3
Query: 145 HTSLEKVPTYGGNIYFLSVVDDFSRHI*IFLLKIKDQTFEKFCEWKRL 2
H +VP+ G YF+S++DD+SR + I++LKIKDQ EKF WK L
Sbjct: 489 HWGPAQVPSLSGGRYFMSLIDDYSRKVWIYILKIKDQALEKFKVWKSL 536
Score = 38.5 bits (88), Expect(3) = 3e-14
Identities = 16/27 (59%), Positives = 20/27 (74%)
Frame = -2
Query: 290 WHCRIGHISEKGLHHLQKQKLVCGDKI 210
WH R+GH+S KGL L KQ L+ GD+I
Sbjct: 426 WHLRLGHMSIKGLQELSKQGLLGGDRI 452
Score = 30.0 bits (66), Expect(3) = 3e-14
Identities = 9/26 (34%), Positives = 18/26 (69%)
Frame = -1
Query: 204 LDFCDHCVLGKMHKIRFSTNTQVLKR 127
L+FC++C+ GK H+ +F+ + K+
Sbjct: 455 LEFCENCIFGKSHRSKFNKGEHMSKQ 480
>gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|133711819|gb|ABO36636.1|
copia LTR rider [Solanum lycopersicum]
Length = 1307
Score = 45.1 bits (105), Expect(3) = 1e-11
Identities = 18/43 (41%), Positives = 31/43 (72%)
Frame = -3
Query: 130 KVPTYGGNIYFLSVVDDFSRHI*IFLLKIKDQTFEKFCEWKRL 2
+V + GG +F+S++DD+SR ++++K K + F+KF EWK L
Sbjct: 482 RVESLGGCRFFVSIIDDYSRMTWVYMMKHKSEAFQKFKEWKIL 524
Score = 35.4 bits (80), Expect(3) = 1e-11
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = -2
Query: 290 WHCRIGHISEKGLHHLQKQKLVCGDKI 210
WH R+GH+ E+G+ L K+ L+ G K+
Sbjct: 414 WHIRLGHMGERGMQILSKEDLLAGHKV 440
Score = 33.9 bits (76), Expect(3) = 1e-11
Identities = 11/18 (61%), Positives = 16/18 (88%)
Frame = -1
Query: 207 SLDFCDHCVLGKMHKIRF 154
SL+FC+HCV GK+H+ +F
Sbjct: 442 SLEFCEHCVFGKLHRNKF 459
>gb|AAF19226.1|AC007505_2 Highly similar to Ta1-3 polyprotein [Arabidopsis thaliana]
Length = 1356
Score = 55.5 bits (132), Expect(3) = 2e-10
Identities = 22/41 (53%), Positives = 31/41 (75%)
Frame = -3
Query: 124 PTYGGNIYFLSVVDDFSRHI*IFLLKIKDQTFEKFCEWKRL 2
P+ G YFLS++DD +R + ++ LK KD+TF+KFCEWK L
Sbjct: 511 PSISGKQYFLSIIDDKTRKVWLYFLKSKDETFDKFCEWKSL 551
Score = 31.2 bits (69), Expect(3) = 2e-10
Identities = 10/18 (55%), Positives = 15/18 (83%)
Frame = -1
Query: 204 LDFCDHCVLGKMHKIRFS 151
L+FC+HCV+GK K+ F+
Sbjct: 469 LEFCEHCVMGKSKKVSFN 486
Score = 23.5 bits (49), Expect(3) = 2e-10
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = -2
Query: 290 WHCRIGHISEKGLHHLQKQKLV 225
WH R+GH+S L L + L+
Sbjct: 440 WHSRLGHMSMNNLKVLAGKGLI 461
>emb|CAA31653.1| polyprotein [Arabidopsis thaliana]
Length = 1291
Score = 56.2 bits (134), Expect(3) = 2e-10
Identities = 22/46 (47%), Positives = 33/46 (71%)
Frame = -3
Query: 139 SLEKVPTYGGNIYFLSVVDDFSRHI*IFLLKIKDQTFEKFCEWKRL 2
S P+ GN YFLS++DD +R + ++ L+ KD+TF++FCEWK L
Sbjct: 516 STNVTPSLSGNKYFLSIIDDKTRKVWLYFLRSKDETFDRFCEWKEL 561
Score = 30.0 bits (66), Expect(3) = 2e-10
Identities = 10/18 (55%), Positives = 15/18 (83%)
Frame = -1
Query: 204 LDFCDHCVLGKMHKIRFS 151
LDFC++CV+GK K+ F+
Sbjct: 479 LDFCENCVMGKAKKVSFN 496
Score = 23.9 bits (50), Expect(3) = 2e-10
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = -2
Query: 290 WHCRIGHISEKGLHHLQKQKLVCGDKI 210
WH R+GHI + L + LV ++I
Sbjct: 450 WHSRLGHIGLNNMKVLAGKGLVSKEEI 476
>gb|AAD19773.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1335
Score = 49.7 bits (117), Expect(3) = 2e-10
Identities = 20/38 (52%), Positives = 29/38 (76%)
Frame = -3
Query: 115 GGNIYFLSVVDDFSRHI*IFLLKIKDQTFEKFCEWKRL 2
G + YF+S VDD+SR + I+ L+ KD+ FEKF EWK++
Sbjct: 491 GNSQYFISFVDDYSRKVWIYFLRKKDEAFEKFVEWKKM 528
Score = 30.8 bits (68), Expect(3) = 2e-10
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -1
Query: 204 LDFCDHCVLGKMHKIRFSTNTQVLK 130
L+FC+ CV GK H++ F+ V K
Sbjct: 446 LEFCEDCVYGKQHRVSFAPAQHVTK 470
Score = 29.3 bits (64), Expect(3) = 2e-10
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = -2
Query: 290 WHCRIGHISEKGLHHLQKQ 234
WH R+GH+S+KG+ L K+
Sbjct: 417 WHSRLGHMSQKGMEILVKK 435
>emb|CAN61272.1| hypothetical protein VITISV_039063 [Vitis vinifera]
Length = 1643
Score = 45.4 bits (106), Expect(3) = 4e-10
Identities = 18/42 (42%), Positives = 29/42 (69%)
Frame = -3
Query: 127 VPTYGGNIYFLSVVDDFSRHI*IFLLKIKDQTFEKFCEWKRL 2
V ++ G Y+++ +DDFSR + ++ LK KD+ F KF EWK +
Sbjct: 817 VESHSGCRYYVTFIDDFSRKVWVYFLKAKDEVFGKFKEWKTM 858
Score = 35.4 bits (80), Expect(3) = 4e-10
Identities = 15/24 (62%), Positives = 18/24 (75%)
Frame = -2
Query: 290 WHCRIGHISEKGLHHLQKQKLVCG 219
WH R+GH+SEKGL L KQ L+ G
Sbjct: 748 WHRRLGHMSEKGLSILSKQGLLSG 771
Score = 28.1 bits (61), Expect(3) = 4e-10
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = -1
Query: 204 LDFCDHCVLGKMHKIRFS 151
L FC+ CV+GK +++FS
Sbjct: 777 LKFCETCVMGKQRRVKFS 794
>gb|AAL31093.1|AC091749_22 putative retrotransposon-related protein [Oryza sativa Japonica
Group] gi|22655747|gb|AAN04164.1| Putative
retrotransposon protein [Oryza sativa Japonica Group]
gi|31431214|gb|AAP53029.1| retrotransposon protein,
putative, Ty1-copia subclass, expressed [Oryza sativa
Japonica Group]
Length = 1229
Score = 45.4 bits (106), Expect(3) = 5e-10
Identities = 19/39 (48%), Positives = 26/39 (66%)
Frame = -3
Query: 124 PTYGGNIYFLSVVDDFSRHI*IFLLKIKDQTFEKFCEWK 8
P+ GG Y L+++DD+SR + + LK KD TF F EWK
Sbjct: 496 PSLGGACYMLTIIDDYSRKVWPYFLKHKDDTFAAFKEWK 534
Score = 32.0 bits (71), Expect(3) = 5e-10
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = -2
Query: 290 WHCRIGHISEKGLHHLQKQKLVCG 219
WH R+GH+SE G+ L K+ L+ G
Sbjct: 426 WHMRLGHMSELGMAELMKRNLLDG 449
Score = 31.2 bits (69), Expect(3) = 5e-10
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = -1
Query: 207 SLDFCDHCVLGKMHKIRFSTNTQVLK 130
++ FC+HCV GK +++F+T+ K
Sbjct: 454 NMKFCEHCVFGKHKRVKFNTSVHRTK 479
>emb|CAA20201.1| putative transposable element [Arabidopsis thaliana]
gi|7268932|emb|CAB79135.1| putative transposable element
[Arabidopsis thaliana]
Length = 1308
Score = 53.5 bits (127), Expect(3) = 7e-10
Identities = 22/37 (59%), Positives = 28/37 (75%)
Frame = -3
Query: 112 GNIYFLSVVDDFSRHI*IFLLKIKDQTFEKFCEWKRL 2
G YFLS++DD SR + + LK KD+TFE+FCEWK L
Sbjct: 506 GKQYFLSIIDDKSRKVWLMFLKTKDETFERFCEWKEL 542
Score = 28.1 bits (61), Expect(3) = 7e-10
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = -1
Query: 204 LDFCDHCVLGKMHKIRFSTNTQV 136
L FC++CV+GK K+ F+ +
Sbjct: 470 LSFCENCVMGKSKKLSFNVGKHI 492
Score = 26.6 bits (57), Expect(3) = 7e-10
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = -2
Query: 290 WHCRIGHISEKGLHHLQKQKLV 225
WHCR+GH+S + L ++ L+
Sbjct: 441 WHCRLGHMSLNNMKILAEKGLL 462
>gb|ABA96191.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1156
Score = 45.4 bits (106), Expect(3) = 7e-10
Identities = 19/39 (48%), Positives = 26/39 (66%)
Frame = -3
Query: 124 PTYGGNIYFLSVVDDFSRHI*IFLLKIKDQTFEKFCEWK 8
P+ GG Y L+++DD+SR + + LK KD TF F EWK
Sbjct: 439 PSLGGACYMLTIIDDYSRKVWPYFLKHKDDTFAAFKEWK 477
Score = 32.0 bits (71), Expect(3) = 7e-10
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = -2
Query: 290 WHCRIGHISEKGLHHLQKQKLVCG 219
WH R+GH+SE G+ L K+ L+ G
Sbjct: 369 WHMRLGHMSELGMAELMKRNLLDG 392
Score = 30.8 bits (68), Expect(3) = 7e-10
Identities = 9/21 (42%), Positives = 17/21 (80%)
Frame = -1
Query: 207 SLDFCDHCVLGKMHKIRFSTN 145
++ FC+HCV GK +++F+T+
Sbjct: 397 NMKFCEHCVFGKHKRVKFNTS 417
>emb|CAH65740.1| OSIGBa0127D24.3 [Oryza sativa Indica Group]
Length = 1009
Score = 40.4 bits (93), Expect(3) = 7e-10
Identities = 16/40 (40%), Positives = 27/40 (67%)
Frame = -3
Query: 121 TYGGNIYFLSVVDDFSRHI*IFLLKIKDQTFEKFCEWKRL 2
++GG Y ++++DD+SR + + LK K Q F+ F EWK +
Sbjct: 328 SFGGARYMMTIIDDYSRKVWPYFLKHKYQAFDVFKEWKTM 367
Score = 35.4 bits (80), Expect(3) = 7e-10
Identities = 11/21 (52%), Positives = 18/21 (85%)
Frame = -1
Query: 204 LDFCDHCVLGKMHKIRFSTNT 142
L FC+HC+ GK H+++F+T+T
Sbjct: 286 LIFCEHCIFGKHHRVKFNTST 306
Score = 32.3 bits (72), Expect(3) = 7e-10
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = -2
Query: 290 WHCRIGHISEKGLHHLQKQKLVCGDKI 210
WH R+GH+SE GL L K+ ++ G I
Sbjct: 257 WHMRLGHMSEIGLAELSKRGMLDGQSI 283
>gb|AAP54315.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1312
Score = 40.8 bits (94), Expect(3) = 9e-10
Identities = 17/40 (42%), Positives = 27/40 (67%)
Frame = -3
Query: 121 TYGGNIYFLSVVDDFSRHI*IFLLKIKDQTFEKFCEWKRL 2
++GG Y +++VDD+SR + + LK K Q F+ F EWK +
Sbjct: 542 SFGGARYMMTIVDDYSRKVWPYFLKHKYQAFDVFKEWKTM 581
Score = 34.3 bits (77), Expect(3) = 9e-10
Identities = 14/27 (51%), Positives = 19/27 (70%)
Frame = -2
Query: 290 WHCRIGHISEKGLHHLQKQKLVCGDKI 210
WH R+GH+SE GL L K++L+ G I
Sbjct: 471 WHMRLGHMSEIGLAELSKRELLDGQSI 497
Score = 32.7 bits (73), Expect(3) = 9e-10
Identities = 10/21 (47%), Positives = 17/21 (80%)
Frame = -1
Query: 204 LDFCDHCVLGKMHKIRFSTNT 142
L FC+HC+ GK +++F+T+T
Sbjct: 500 LKFCEHCIFGKHKRVKFNTST 520
>gb|AAM91886.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1280
Score = 40.8 bits (94), Expect(3) = 9e-10
Identities = 17/40 (42%), Positives = 27/40 (67%)
Frame = -3
Query: 121 TYGGNIYFLSVVDDFSRHI*IFLLKIKDQTFEKFCEWKRL 2
++GG Y +++VDD+SR + + LK K Q F+ F EWK +
Sbjct: 542 SFGGARYMMTIVDDYSRKVWPYFLKHKYQAFDVFKEWKTM 581
Score = 34.3 bits (77), Expect(3) = 9e-10
Identities = 14/27 (51%), Positives = 19/27 (70%)
Frame = -2
Query: 290 WHCRIGHISEKGLHHLQKQKLVCGDKI 210
WH R+GH+SE GL L K++L+ G I
Sbjct: 471 WHMRLGHMSEIGLAELSKRELLDGQSI 497
Score = 32.7 bits (73), Expect(3) = 9e-10
Identities = 10/21 (47%), Positives = 17/21 (80%)
Frame = -1
Query: 204 LDFCDHCVLGKMHKIRFSTNT 142
L FC+HC+ GK +++F+T+T
Sbjct: 500 LKFCEHCIFGKHKRVKFNTST 520
>gb|AAT01387.1| putative polyprotein [Oryza sativa Japonica Group]
gi|48475101|gb|AAT44170.1| putative polyprotein [Oryza
sativa Japonica Group]
Length = 1175
Score = 44.7 bits (104), Expect(3) = 9e-10
Identities = 19/39 (48%), Positives = 26/39 (66%)
Frame = -3
Query: 124 PTYGGNIYFLSVVDDFSRHI*IFLLKIKDQTFEKFCEWK 8
P+ GG Y L+++DD+SR + + LK KD TF F EWK
Sbjct: 394 PSLGGARYMLTIIDDYSRKVWPYFLKHKDDTFAAFKEWK 432
Score = 32.0 bits (71), Expect(3) = 9e-10
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = -2
Query: 290 WHCRIGHISEKGLHHLQKQKLVCG 219
WH R+GH+SE G+ L K+ L+ G
Sbjct: 324 WHMRLGHMSELGMAELMKRNLLDG 347
Score = 31.2 bits (69), Expect(3) = 9e-10
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = -1
Query: 207 SLDFCDHCVLGKMHKIRFSTNTQVLK 130
++ FC+HCV GK +++F+T+ K
Sbjct: 352 NMKFCEHCVFGKHKRVKFNTSVHRTK 377
>gb|ABA91380.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1138
Score = 41.6 bits (96), Expect(3) = 9e-10
Identities = 17/40 (42%), Positives = 27/40 (67%)
Frame = -3
Query: 121 TYGGNIYFLSVVDDFSRHI*IFLLKIKDQTFEKFCEWKRL 2
++GG Y +++VDD+SR + + LK K Q F+ F EWK +
Sbjct: 425 SFGGACYMMTIVDDYSRKVWPYFLKHKYQAFDVFKEWKTM 464
Score = 33.5 bits (75), Expect(3) = 9e-10
Identities = 14/27 (51%), Positives = 18/27 (66%)
Frame = -2
Query: 290 WHCRIGHISEKGLHHLQKQKLVCGDKI 210
WH R+GH+SE GL L K+ L+ G I
Sbjct: 354 WHMRLGHMSEIGLAELSKRGLLYGQSI 380
Score = 32.7 bits (73), Expect(3) = 9e-10
Identities = 10/21 (47%), Positives = 17/21 (80%)
Frame = -1
Query: 204 LDFCDHCVLGKMHKIRFSTNT 142
L FC+HC+ GK +++F+T+T
Sbjct: 383 LKFCEHCIFGKHKRVKFNTST 403
>gb|AAK38381.1|AC079028_5 polyprotein, putative [Arabidopsis thaliana]
Length = 855
Score = 58.2 bits (139), Expect(3) = 9e-10
Identities = 23/41 (56%), Positives = 32/41 (78%)
Frame = -3
Query: 124 PTYGGNIYFLSVVDDFSRHI*IFLLKIKDQTFEKFCEWKRL 2
P+ GN YFLS++DD SR + ++ L+ KD+TF+KFCEWK L
Sbjct: 194 PSMSGNKYFLSIIDDKSRKVWLYFLRSKDETFDKFCEWKEL 234
Score = 28.5 bits (62), Expect(3) = 9e-10
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = -1
Query: 207 SLDFCDHCVLGKMHKIRFS 151
SL+F +HCV+GK K+ F+
Sbjct: 151 SLEFYEHCVMGKAKKVSFN 169
Score = 21.2 bits (43), Expect(3) = 9e-10
Identities = 7/22 (31%), Positives = 12/22 (54%)
Frame = -2
Query: 290 WHCRIGHISEKGLHHLQKQKLV 225
WH R+GH+ + L + L+
Sbjct: 123 WHSRLGHMGGNNMKILAGKGLI 144
>ref|NP_001172143.1| Os01g0116166 [Oryza sativa Japonica Group]
gi|255672802|dbj|BAH90873.1| Os01g0116166 [Oryza sativa
Japonica Group]
Length = 778
Score = 40.8 bits (94), Expect(3) = 1e-09
Identities = 17/40 (42%), Positives = 27/40 (67%)
Frame = -3
Query: 121 TYGGNIYFLSVVDDFSRHI*IFLLKIKDQTFEKFCEWKRL 2
++GG Y +++VDD+SR + + LK K Q F+ F EWK +
Sbjct: 473 SFGGARYIMTIVDDYSRKVWPYFLKHKYQAFDVFKEWKTM 512
Score = 33.5 bits (75), Expect(3) = 1e-09
Identities = 14/27 (51%), Positives = 18/27 (66%)
Frame = -2
Query: 290 WHCRIGHISEKGLHHLQKQKLVCGDKI 210
WH R+GH+SE GL L K+ L+ G I
Sbjct: 402 WHMRLGHMSEIGLAELSKRGLLYGQSI 428
Score = 32.7 bits (73), Expect(3) = 1e-09
Identities = 10/21 (47%), Positives = 17/21 (80%)
Frame = -1
Query: 204 LDFCDHCVLGKMHKIRFSTNT 142
L FC+HC+ GK +++F+T+T
Sbjct: 431 LKFCEHCIFGKHKRVKFNTST 451
>gb|AAP53216.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1262
Score = 40.8 bits (94), Expect(3) = 2e-09
Identities = 17/40 (42%), Positives = 27/40 (67%)
Frame = -3
Query: 121 TYGGNIYFLSVVDDFSRHI*IFLLKIKDQTFEKFCEWKRL 2
++GG Y +++VDD+SR + + LK K Q F+ F EWK +
Sbjct: 522 SFGGARYMMTIVDDYSRKVWPYFLKHKYQAFDVFKEWKTM 561
Score = 33.1 bits (74), Expect(3) = 2e-09
Identities = 14/27 (51%), Positives = 18/27 (66%)
Frame = -2
Query: 290 WHCRIGHISEKGLHHLQKQKLVCGDKI 210
WH R+GH+SE GL L K+ L+ G I
Sbjct: 451 WHMRLGHMSEIGLAELSKRGLLDGQSI 477
Score = 32.7 bits (73), Expect(3) = 2e-09
Identities = 10/21 (47%), Positives = 17/21 (80%)
Frame = -1
Query: 204 LDFCDHCVLGKMHKIRFSTNT 142
L FC+HC+ GK +++F+T+T
Sbjct: 480 LKFCEHCIFGKHKRVKFNTST 500
>gb|AAT44282.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1243
Score = 40.8 bits (94), Expect(3) = 2e-09
Identities = 17/40 (42%), Positives = 27/40 (67%)
Frame = -3
Query: 121 TYGGNIYFLSVVDDFSRHI*IFLLKIKDQTFEKFCEWKRL 2
++GG Y +++VDD+SR + + LK K Q F+ F EWK +
Sbjct: 479 SFGGARYMMTIVDDYSRKVWPYFLKHKYQAFDGFKEWKTM 518
Score = 33.1 bits (74), Expect(3) = 2e-09
Identities = 14/27 (51%), Positives = 18/27 (66%)
Frame = -2
Query: 290 WHCRIGHISEKGLHHLQKQKLVCGDKI 210
WH R+GH+SE GL L K+ L+ G I
Sbjct: 408 WHMRLGHMSEIGLAELSKRGLLDGQSI 434
Score = 32.7 bits (73), Expect(3) = 2e-09
Identities = 10/21 (47%), Positives = 17/21 (80%)
Frame = -1
Query: 204 LDFCDHCVLGKMHKIRFSTNT 142
L FC+HC+ GK +++F+T+T
Sbjct: 437 LKFCEHCIFGKHKRVKFNTST 457
>gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1241
Score = 40.8 bits (94), Expect(3) = 2e-09
Identities = 17/40 (42%), Positives = 27/40 (67%)
Frame = -3
Query: 121 TYGGNIYFLSVVDDFSRHI*IFLLKIKDQTFEKFCEWKRL 2
++GG Y +++VDD+SR + + LK K Q F+ F EWK +
Sbjct: 416 SFGGARYMMTIVDDYSRKVWPYFLKHKYQAFDVFKEWKTM 455
Score = 33.1 bits (74), Expect(3) = 2e-09
Identities = 14/27 (51%), Positives = 18/27 (66%)
Frame = -2
Query: 290 WHCRIGHISEKGLHHLQKQKLVCGDKI 210
WH R+GH+SE GL L K+ L+ G I
Sbjct: 345 WHMRLGHMSEIGLAELSKRGLLDGQSI 371
Score = 32.7 bits (73), Expect(3) = 2e-09
Identities = 10/21 (47%), Positives = 17/21 (80%)
Frame = -1
Query: 204 LDFCDHCVLGKMHKIRFSTNT 142
L FC+HC+ GK +++F+T+T
Sbjct: 374 LKFCEHCIFGKHKRVKFNTST 394
>gb|AAM08562.1|AC092749_15 Putative retroelement [Oryza sativa Japonica Group]
gi|20087076|gb|AAM10749.1|AC112514_2 Putative
retroelement [Oryza sativa Japonica Group]
Length = 1225
Score = 40.8 bits (94), Expect(3) = 2e-09
Identities = 17/40 (42%), Positives = 27/40 (67%)
Frame = -3
Query: 121 TYGGNIYFLSVVDDFSRHI*IFLLKIKDQTFEKFCEWKRL 2
++GG Y +++VDD+SR + + LK K Q F+ F EWK +
Sbjct: 468 SFGGARYMMTIVDDYSRKVWPYFLKHKYQAFDVFKEWKTM 507
Score = 33.1 bits (74), Expect(3) = 2e-09
Identities = 14/27 (51%), Positives = 18/27 (66%)
Frame = -2
Query: 290 WHCRIGHISEKGLHHLQKQKLVCGDKI 210
WH R+GH+SE GL L K+ L+ G I
Sbjct: 397 WHMRLGHMSEIGLAELSKRGLLDGQSI 423
Score = 32.7 bits (73), Expect(3) = 2e-09
Identities = 10/21 (47%), Positives = 17/21 (80%)
Frame = -1
Query: 204 LDFCDHCVLGKMHKIRFSTNT 142
L FC+HC+ GK +++F+T+T
Sbjct: 426 LKFCEHCIFGKHKRVKFNTST 446