BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Catharanthus22_contig00031439
         (1015 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004306073.1| PREDICTED: putative ribonuclease H protein A...    47   5e-09
gb|EMJ13927.1| hypothetical protein PRUPE_ppa019009mg, partial [...    42   1e-07
ref|XP_004298044.1| PREDICTED: putative ribonuclease H protein A...    49   2e-06
gb|AAF19536.1|AC007190_4 F23N19.5 [Arabidopsis thaliana]               46   3e-06
gb|EOY02505.1| RNA-binding (RRM/RBD/RNP motifs) family protein i...    59   4e-06
gb|EMJ25605.1| hypothetical protein PRUPE_ppa021713mg, partial [...    45   6e-06

>ref|XP_004306073.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Fragaria
           vesca subsp. vesca]
          Length = 187

 Score = 47.4 bits (111), Expect(2) = 5e-09
 Identities = 25/63 (39%), Positives = 37/63 (58%)
 Frame = +2

Query: 332 YYKLNTNGSTLGNPCLEGAGGLFQNSQA*WTRGFFRKLGVTNNMVAELWAIRDGVTVS*S 511
           YYKLN +G+ + +  + GAGG+ +N    W  GF   LGV   + AE WA+  G+ ++ S
Sbjct: 6   YYKLNIDGTRISSSSMIGAGGVIRNHAGAWIAGFQINLGVCAILDAEAWALFHGLKLA-S 64

Query: 512 KGH 520
           K H
Sbjct: 65  KLH 67



 Score = 40.8 bits (94), Expect(2) = 5e-09
 Identities = 25/97 (25%), Positives = 39/97 (40%)
 Frame = +3

Query: 519 IQLLIVEADSTLLIDFLK*NNDDTHTLLPIISDCRFMMDSFTECRFLHVYSEEKMRVAFL 698
           I  L +E+DS +L+  +  +N  +H L  ++  C  MM    + +  H++ E  M    L
Sbjct: 68  ISCLEIESDSAILVQLMNCSNLSSHPLGSLLGGCSSMMTEMDDVKLFHIFREANMTADSL 127

Query: 699 AKLGGSTSFLVEGRMVVTPFIIFDSPSFSVSQGLADD 809
           AK   S              IIF+ P         DD
Sbjct: 128 AKCSISNEL---------GLIIFEDPPVHAIPAYLDD 155


>gb|EMJ13927.1| hypothetical protein PRUPE_ppa019009mg, partial [Prunus persica]
          Length = 259

 Score = 42.0 bits (97), Expect(2) = 1e-07
 Identities = 21/56 (37%), Positives = 30/56 (53%)
 Frame = +2

Query: 338 KLNTNGSTLGNPCLEGAGGLFQNSQA*WTRGFFRKLGVTNNMVAELWAIRDGVTVS 505
           K+NT+G   G      AG + ++S   W RGF   LGV   + AELW I  G+ ++
Sbjct: 42  KINTDGCRKGEDGRNAAGSVLRDSSGQWMRGFAVNLGVGQVLEAELWGIYLGLKIA 97



 Score = 41.2 bits (95), Expect(2) = 1e-07
 Identities = 22/65 (33%), Positives = 35/65 (53%)
 Frame = +3

Query: 516 GIQLLIVEADSTLLIDFLK*NNDDTHTLLPIISDCRFMMDSFTECRFLHVYSEEKMRVAF 695
           G   +++E+DST  +  L  N +D H L+ ++  C+  ++    C   HVY E  M V  
Sbjct: 101 GCSAVVLESDSTTAVHLLHKNVEDLHPLVAMLWGCQDYINKNWVCSIHHVYRECNMLVDK 160

Query: 696 LAKLG 710
           LA+LG
Sbjct: 161 LAELG 165


>ref|XP_004298044.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Fragaria
           vesca subsp. vesca]
          Length = 168

 Score = 49.3 bits (116), Expect(2) = 2e-06
 Identities = 24/69 (34%), Positives = 38/69 (55%)
 Frame = +3

Query: 528 LIVEADSTLLIDFLK*NNDDTHTLLPIISDCRFMMDSFTECRFLHVYSEEKMRVAFLAKL 707
           L++E+DS +++  LK   DD H L  ++  C+F+MD    C   HV+ E  M    L+K 
Sbjct: 70  LLIESDSNVIVQMLKKGVDDLHPLYSVLGRCKFLMDKLFMCDVSHVHREINMVANILSKS 129

Query: 708 GGSTSFLVE 734
             S+ F V+
Sbjct: 130 RLSSEFGVQ 138



 Score = 30.4 bits (67), Expect(2) = 2e-06
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +2

Query: 374 CLEGAGGLFQNSQA*WTRGFFRKLGVTNNMVAELWAI 484
           C  GAGG+ ++S   W  GF   LG  + + A+ W +
Sbjct: 19  CCIGAGGVLRDSNGNWISGFAASLGNGSVLDAKAWGL 55


>gb|AAF19536.1|AC007190_4 F23N19.5 [Arabidopsis thaliana]
          Length = 233

 Score = 46.2 bits (108), Expect(2) = 3e-06
 Identities = 24/62 (38%), Positives = 35/62 (56%)
 Frame = +2

Query: 338 KLNTNGSTLGNPCLEGAGGLFQNSQA*WTRGFFRKLGVTNNMVAELWAIRDGVTVS*SKG 517
           KLNT+G++ GNP L  AGG  +N    W  GF   +G     +AELW +  G+ ++  +G
Sbjct: 74  KLNTDGASHGNPGLATAGGALRNEYGEWCFGFALNIGRCLAPLAELWGVYYGLFMAWDRG 133

Query: 518 HT 523
            T
Sbjct: 134 IT 135



 Score = 32.3 bits (72), Expect(2) = 3e-06
 Identities = 29/109 (26%), Positives = 42/109 (38%)
 Frame = +3

Query: 513 KGIQLLIVEADSTLLIDFLK*NNDDTHTLLPIISDCRFMMDSFTECRFLHVYSEEKMRVA 692
           +GI  L +E DS +++ FL+     +H L  ++  C   +      R  HVY E      
Sbjct: 132 RGITRLELEVDSEMVVGFLRTGIGSSHPLSFLVRMCHGFLSRDWIVRIGHVYREANRLAD 191

Query: 693 FLAKLGGSTSFLVEGRMVVTPFIIFDSPSFSVSQGLADDAYGTMPTRLV 839
            LA              +   +  F SP  S+   L DD  G    RLV
Sbjct: 192 GLANYAFD---------LPLGYHAFASPPNSLDSILRDDELGISVPRLV 231


>gb|EOY02505.1| RNA-binding (RRM/RBD/RNP motifs) family protein isoform 1
           [Theobroma cacao] gi|508710609|gb|EOY02506.1|
           RNA-binding (RRM/RBD/RNP motifs) family protein isoform
           1 [Theobroma cacao]
          Length = 344

 Score = 58.5 bits (140), Expect = 4e-06
 Identities = 25/62 (40%), Positives = 39/62 (62%)
 Frame = +2

Query: 332 YYKLNTNGSTLGNPCLEGAGGLFQNSQA*WTRGFFRKLGVTNNMVAELWAIRDGVTVS*S 511
           ++KLN+ GS+  +P   GAGG+ +N Q  W  G+ RKLG   +  AE W +RDG+ ++  
Sbjct: 70  FFKLNSGGSSAADPGKAGAGGIIRNDQGEWNVGYSRKLGQATSTCAEHWGLRDGLQLAVK 129

Query: 512 KG 517
           +G
Sbjct: 130 RG 131


>gb|EMJ25605.1| hypothetical protein PRUPE_ppa021713mg, partial [Prunus persica]
          Length = 406

 Score = 45.4 bits (106), Expect(2) = 6e-06
 Identities = 22/56 (39%), Positives = 36/56 (64%)
 Frame = +2

Query: 338 KLNTNGSTLGNPCLEGAGGLFQNSQA*WTRGFFRKLGVTNNMVAELWAIRDGVTVS 505
           K+NT+GS   +    GAGGL +++   W++GF   LG+ + + AELW I  G+T++
Sbjct: 295 KINTDGSRSPSSGSIGAGGLLRDTTGEWSKGFSVNLGIGSVLEAELWGILWGLTLA 350



 Score = 32.3 bits (72), Expect(2) = 6e-06
 Identities = 17/47 (36%), Positives = 22/47 (46%)
 Frame = +3

Query: 534 VEADSTLLIDFLK*NNDDTHTLLPIISDCRFMMDSFTECRFLHVYSE 674
           VE+DS   +  L      TH LL II  C+ M+     C   H+Y E
Sbjct: 360 VESDSCDAVSMLNSPTIPTHPLLSIICCCKLMIKKDWRCSINHIYCE 406