BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Catharanthus22_contig00031281
         (1993 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN66637.1| hypothetical protein VITISV_011340 [Vitis vinifera]   429   0.0  
gb|AAT38766.2| Polyprotein, putative [Solanum demissum]               280   e-169
gb|AAT44162.1| putative polyprotein [Oryza sativa Japonica Group]     315   e-158
gb|AAX96832.1| retrotransposon protein, putative, Ty1-copia sub-...   315   e-158
gb|AAT69606.1| putative polyprotein [Oryza sativa Japonica Group...   315   e-158
gb|ABF98943.1| retrotransposon protein, putative, unclassified, ...   315   e-158
gb|AAN61480.1| Putative polyprotein from transposon TNT [Oryza s...   315   e-158
gb|AAT58810.1| putative polyprotein [Oryza sativa Japonica Group]     316   e-158
gb|AAT38001.1| Putative polyprotein [Oryza sativa Japonica Group]     316   e-158
gb|AAU44026.2| putative polyprotein [Oryza sativa Japonica Group]     315   e-157
gb|ABA97938.1| retrotransposon protein, putative, Ty1-copia subc...   315   e-157
gb|AAP54573.2| retrotransposon protein, putative, Ty1-copia subc...   315   e-157
gb|AAT77367.1| putative polyprotein [Oryza sativa Japonica Group...   315   e-157
emb|CAD40198.2| OSJNBb0043H09.7 [Oryza sativa Japonica Group]         315   e-157
emb|CAE01299.2| OSJNBa0020P07.16 [Oryza sativa Japonica Group]        313   e-157
gb|ABF96953.1| retrotransposon protein, putative, Ty1-copia subc...   312   e-156
gb|AAS01934.1| putative Integrase core domain containing protein...   312   e-156
emb|CAE04792.1| OSJNBb0018J12.5 [Oryza sativa Japonica Group]         315   e-156
gb|AAX96223.1| retrotransposon protein, putative, Ty1-copia sub-...   311   e-156
gb|AAP53927.1| retrotransposon protein, putative, Ty1-copia subc...   313   e-156

>emb|CAN66637.1| hypothetical protein VITISV_011340 [Vitis vinifera]
          Length = 1316

 Score =  429 bits (1104), Expect(2) = 0.0
 Identities = 208/301 (69%), Positives = 246/301 (81%)
 Frame = -2

Query: 1980 KFARTSFYKIERSTEPPELIHSDVCDLKYVQTCGGNKYFITFIDNSTKFYYVYLLKSKDE 1801
            K  R+SF  +ER+TEP +LIHSD+CDLK+VQT GGNKYFITF+D+STK+ YVYLLKSKDE
Sbjct: 512  KLTRSSFQSVERNTEPLDLIHSDICDLKFVQTRGGNKYFITFVDDSTKYCYVYLLKSKDE 571

Query: 1800 ALAKFIIYKNEVENQLGKKIKRLRSDRGGEYEAPIGDFCVQHGIVHEVTTPYSPQSNGVA 1621
            A+ KF++YK EVENQL KKIK LRSDRGGEYE+P  D C QHGI+HE T PYSPQSNGVA
Sbjct: 572  AIEKFVLYKTEVENQLNKKIKVLRSDRGGEYESPFVDICAQHGIIHETTAPYSPQSNGVA 631

Query: 1620 ERKNCTLREMMNAMLISSGLPSNMWGEAILSNNYILNRIPRKKQDKTPYELWSGKKPSYK 1441
            ERKN TL+EMMNAMLISS LP NMWGEAIL+ NY+LN++P+KK +KTPYELW G+KPSY 
Sbjct: 632  ERKNRTLKEMMNAMLISSSLPQNMWGEAILTANYLLNKVPKKKAEKTPYELWKGRKPSYT 691

Query: 1440 YL*VWESLAKVAVLVPKVIKIGLETMDCIFIEYPHNSTAYRFLVHDSKIPDIHKNTVIES 1261
            YL +W  LAKVAV  PK +KIG +T+DCIFI Y HNS AYRFLV++S IPDIHKNT++ES
Sbjct: 692  YLRMWGCLAKVAVPPPKKVKIGPKTIDCIFIGYAHNSNAYRFLVYESNIPDIHKNTIMES 751

Query: 1260 RNASFLENVFPCKSMSGSSSLKRVNEEVQDPTKVQEVELRRSIQPKIAKTFGDDFETYLL 1081
            RNASF E+VFPCKS    SS KR+ E  QD  +  EVE RRS + +  K+FG DF T++L
Sbjct: 752  RNASFFEDVFPCKSKEEPSSSKRMLES-QDQNEEVEVEPRRSKRVRTEKSFGPDFLTFML 810

Query: 1080 E 1078
            E
Sbjct: 811  E 811



 Score =  401 bits (1030), Expect(2) = 0.0
 Identities = 211/357 (59%), Positives = 254/357 (71%)
 Frame = -3

Query: 1073 EPLTYDEAVNSSERHLWKESIKSEVDSIMQNYT*ELVDLPPRCKTLGSKWIFKRKMKPDG 894
            EP T+ EAVNS+E  +WKE+IKSE+DSI+QN+T ELVDLPP CK L SKWIFKRKMK DG
Sbjct: 813  EPQTFKEAVNSTEGLMWKEAIKSEIDSILQNHTWELVDLPPGCKPLSSKWIFKRKMKVDG 872

Query: 893  SIDKYKTRLVIKGYR*KEGLDYFDIYSPVTGINSIKMIHAIASLRNLNVKWMLKQLS*MG 714
            SIDKYK RLVIKGYR  EGLDYFD YSPVT INSI+M+ AIA+LRNL +  M        
Sbjct: 873  SIDKYKARLVIKGYRQTEGLDYFDTYSPVTRINSIRMVLAIAALRNLEIHQMD------- 925

Query: 713  N*MKKFIWSNLRVLDLQVRKRKFVSWLNHCMV*NKRRKSGMRSLTTQ*FLVDLRFNECDK 534
              MK+             +++K    +       +  K               + NECDK
Sbjct: 926  --MKEIYMEQPEGFSAPGQEKKVCKLVKSLYGLKQAPKQWHEKFDNVMLSHGFKINECDK 983

Query: 533  CVYIKEMENEYVILCLYVDDILIVGSNDKIVKSTKNMLNSKFDMKDMRLADVILGIKIIR 354
            CVY+K+ E+ YVI+CLYVDD+LIVGS+DK++ STKNMLNS+FDMKDM LADVILGIKI R
Sbjct: 984  CVYVKDTEHGYVIVCLYVDDMLIVGSDDKMITSTKNMLNSRFDMKDMGLADVILGIKIKR 1043

Query: 353  TTDGLVLNQTHYIDKILENFNKNDSGIARTSLDTSLHLSKNRGEDVSQVEYARIIGSLMY 174
            T++ L+L+Q+HY+DKIL  F+K++SG+ART +D +LHLSKN+GE VSQVEY+RIIGSLMY
Sbjct: 1044 TSNELILSQSHYVDKILGKFDKDNSGVARTPVDVTLHLSKNKGESVSQVEYSRIIGSLMY 1103

Query: 173  LMSYTRPDMAYVVSKLSGYTSNPSAEHWTAXXXXXXXXXXXXXXXLHYTRYPTVLEG 3
            LMS TRPD+AY V KLS YTSNP A+HW                 LHYTRYP VLEG
Sbjct: 1104 LMSCTRPDIAYAVGKLSRYTSNPGAKHWQGIIRVLKYLRFTRDYXLHYTRYPAVLEG 1160


>gb|AAT38766.2| Polyprotein, putative [Solanum demissum]
          Length = 1355

 Score =  280 bits (716), Expect(4) = e-169
 Identities = 145/284 (51%), Positives = 183/284 (64%)
 Frame = -2

Query: 1929 ELIHSDVCDLKYVQTCGGNKYFITFIDNSTKFYYVYLLKSKDEALAKFIIYKNEVENQLG 1750
            E+   ++CD+K   + GG KYFITFID+ T+F YVYLL SKDEA+  F  YKNEVENQL 
Sbjct: 536  EICVENICDMKSTPSRGGKKYFITFIDDCTRFCYVYLLNSKDEAIDAFKQYKNEVENQLN 595

Query: 1749 KKIKRLRSDRGGEYEAPIGDFCVQHGIVHEVTTPYSPQSNGVAERKNCTLREMMNAMLIS 1570
             KIK +RSDRGGEYE+   + C+++GI+H+ T PY+PQSNG+AERKN TL+EMMNA++IS
Sbjct: 596  LKIKMIRSDRGGEYESLFAEICLEYGIIHQTTAPYTPQSNGLAERKNRTLKEMMNALIIS 655

Query: 1569 SGLPSNMWGEAILSNNYILNRIPRKKQDKTPYELWSGKKPSYKYL*VWESLAKVAVLVPK 1390
            SG P N+WGE IL+ N ILNR+PR K    PYELW G+KP+ KY  VW  LAKV V +PK
Sbjct: 656  SGSPRNLWGETILTANKILNRVPRSKTQSIPYELWKGRKPNLKYFKVWGCLAKVEVPLPK 715

Query: 1389 VIKIGLETMDCIFIEYPHNSTAYRFLVHDSKIPDIHKNTVIESRNASFLENVFPCKSMSG 1210
             +KIG + +DC+FI Y  NS A RFLVH S  P+IH NT     N               
Sbjct: 716  RVKIGPKIVDCVFIGYAVNSKACRFLVHKSDNPEIHVNTEKAQPN--------------- 760

Query: 1209 SSSLKRVNEEVQDPTKVQEVELRRSIQPKIAKTFGDDFETYLLE 1078
                       +DP        RRS + + + +FG DF  +LLE
Sbjct: 761  -----------EDP--------RRSTRQRKSTSFGPDFVAFLLE 785



 Score =  185 bits (470), Expect(4) = e-169
 Identities = 90/184 (48%), Positives = 125/184 (67%)
 Frame = -3

Query: 554  RFNECDKCVYIKEMENEYVILCLYVDDILIVGSNDKIVKSTKNMLNSKFDMKDMRLADVI 375
            + NECDKCVYIK + N  VI+ LYVDD+LI+  +   + +TK ML+SKF MKD+ +ADVI
Sbjct: 923  KINECDKCVYIKNVLNHEVIVFLYVDDMLIMSKDIDDINATKRMLSSKFAMKDLGVADVI 982

Query: 374  LGIKIIRTTDGLVLNQTHYIDKILENFNKNDSGIARTSLDTSLHLSKNRGEDVSQVEYAR 195
            LGI+I++T  GL L+Q+HYI+KIL+ F   +  + +  +D S    KN GE  SQ+EYAR
Sbjct: 983  LGIRILKTPQGLALSQSHYIEKILDKFKYLNFNVVKIPIDLSCTFQKNVGESDSQLEYAR 1042

Query: 194  IIGSLMYLMSYTRPDMAYVVSKLSGYTSNPSAEHWTAXXXXXXXXXXXXXXXLHYTRYPT 15
            ++GSLMY+M+ TRPD++  +SKLS +TSNP+  HW A               LHY +YP 
Sbjct: 1043 VLGSLMYIMNCTRPDISCAISKLSRFTSNPNQTHWMAMKHVLGYLKHSQHYALHYNKYPA 1102

Query: 14   VLEG 3
            ++EG
Sbjct: 1103 MIEG 1106



 Score =  107 bits (266), Expect(4) = e-169
 Identities = 50/80 (62%), Positives = 63/80 (78%)
 Frame = -3

Query: 1079 KKEPLTYDEAVNSSERHLWKESIKSEVDSIMQNYT*ELVDLPPRCKTLGSKWIFKRKMKP 900
            + EP T+   ++SSE   WKE++ SE++SI+ N+T EL DLPP  K+LGSKWIFKRKMK 
Sbjct: 785  ENEPPTFKATMSSSESIYWKEAVNSEIESILSNHTWELADLPPGNKSLGSKWIFKRKMKV 844

Query: 899  DGSIDKYKTRLVIKGYR*KE 840
            DG+IDKYK RLV+KGYR KE
Sbjct: 845  DGTIDKYKARLVVKGYRQKE 864



 Score = 97.1 bits (240), Expect(4) = e-169
 Identities = 44/62 (70%), Positives = 52/62 (83%)
 Frame = -2

Query: 735  KTAFLNGELDEKIYMEQPEGFRSPSTEKKVCKLVKSLYGLK*APKKWHEKFDYAMISSGF 556
            K AFLNGEL+E+IYMEQPEGF  P  E+KVC+LVKS YGLK APK+WH KFD  M+++GF
Sbjct: 863  KEAFLNGELEEEIYMEQPEGFVVPGKEEKVCRLVKSFYGLKQAPKQWHAKFDQTMLANGF 922

Query: 555  KI 550
            KI
Sbjct: 923  KI 924


>gb|AAT44162.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1302

 Score =  315 bits (808), Expect(2) = e-158
 Identities = 158/305 (51%), Positives = 219/305 (71%), Gaps = 14/305 (4%)
 Frame = -2

Query: 1950 ERSTEPPELIHSDVCDLKYVQTCGGNKYFITFIDNSTKFYYVYLLKSKDEALAKFIIYKN 1771
            ER+  P EL+HSD+C++  V T GG +YF+TFID++T+F YVYLLK+KDEAL  F IYK 
Sbjct: 484  ERNLAPLELLHSDLCEMNGVLTKGGKRYFMTFIDDATRFCYVYLLKTKDEALDYFKIYKA 543

Query: 1770 EVENQLGKKIKRLRSDRGGEYEAPIGD-FCVQHGIVHEVTTPYSPQSNGVAERKNCTLRE 1594
            EVENQL +KIKRLRSDRGGE+ +   D FC +HGI+HE T PYSP+SNG+A+RKN TL +
Sbjct: 544  EVENQLDRKIKRLRSDRGGEFFSNEFDLFCEEHGIIHERTPPYSPESNGIAKRKNRTLTD 603

Query: 1593 MMNAMLISSGLPSNMWGEAILSNNYILNRIPRKKQDKTPYELWSGKKPSYKYL*VWESLA 1414
            ++NAML ++GLP   WGEA+L++N++LNR+P + +DKTPYE+W G+KPS  YL  W  LA
Sbjct: 604  LVNAMLDTAGLPKAWWGEALLTSNHVLNRVPNRNKDKTPYEIWIGRKPSLSYLRTWGCLA 663

Query: 1413 KVAVLVPKVIKIGLETMDCIFIEYPHNSTAYRFLVHDSKIPDIHKNTVIESRNASFLENV 1234
            KV V + K  K+G +T+DC+F+ Y H+S AYRFL+  S++PD+H  T++ESR+A+F E+ 
Sbjct: 664  KVNVPITKKHKLGPKTVDCVFLGYAHHSIAYRFLIVKSEVPDMHVGTIMESRDATFFESF 723

Query: 1233 FPCK-SMSGSSSLKRV----------NEEVQDPTKVQEVE--LRRSIQPKIAKTFGDDFE 1093
            FP K + SGS+    +           E   +    ++V    RRS + + AK+FGDDF 
Sbjct: 724  FPMKDTHSGSNQPSEIIPSSITPPEQTEHTHELVSEEDVSEAPRRSKRQRTAKSFGDDFT 783

Query: 1092 TYLLE 1078
             YL++
Sbjct: 784  VYLVD 788



 Score =  273 bits (698), Expect(2) = e-158
 Identities = 156/361 (43%), Positives = 222/361 (61%), Gaps = 5/361 (1%)
 Frame = -3

Query: 1070 PLTYDEAVNSSERHLWKESIKSEVDSIMQNYT*ELVDLPPRCKTLGSKWIFKRKMKPDGS 891
            P +  EA  S +   WKE+++SE+DSI+ N T E+ + P  CK +G KW+FK+K++PDG+
Sbjct: 791  PKSISEAYASPDADYWKEAVRSEMDSIIANGTWEVTERPYGCKPVGCKWVFKKKLRPDGT 850

Query: 890  IDKYKTRLVIKGYR*KEGLDYFDIYSPVTGINSIKMIHAIASLRNLNVKWMLKQLS*MGN 711
            I+KYK RLV KGY  KEG D+FD YSPV  + +I+++ ++A+   L V  M  + + +  
Sbjct: 851  IEKYKARLVAKGYTQKEGEDFFDTYSPVARLTTIRVLLSLAASHGLLVHQMDVKTAFLNG 910

Query: 710  *MKKFIWSNLR---VLDLQVRK--RKFVSWLNHCMV*NKRRKSGMRSLTTQ*FLVDLRFN 546
             + + I+ +     V++ Q  K  +   S         +  +   ++LT+  F V    N
Sbjct: 911  ELDEEIYMDQPDGFVVEGQEGKVCKLLKSLYGLKQAPKQWHEKFDKTLTSAGFAV----N 966

Query: 545  ECDKCVYIKEMENEYVILCLYVDDILIVGSNDKIVKSTKNMLNSKFDMKDMRLADVILGI 366
            E DKCVY +    E VILCLYVDDILI G+N +++   K+ L+  FDMKD+ +ADVIL I
Sbjct: 967  EADKCVYYRHGGGEGVILCLYVDDILIFGTNLEVINEVKSFLSQNFDMKDLGVADVILNI 1026

Query: 365  KIIRTTDGLVLNQTHYIDKILENFNKNDSGIARTSLDTSLHLSKNRGEDVSQVEYARIIG 186
            K+IR  +G+ L Q+HY++KIL  F   DS  + T  D SL L KN+    +Q+EY++IIG
Sbjct: 1027 KLIRGENGITLLQSHYVEKILNRFGYIDSKPSPTPYDPSLLLRKNKRIARNQLEYSQIIG 1086

Query: 185  SLMYLMSYTRPDMAYVVSKLSGYTSNPSAEHWTAXXXXXXXXXXXXXXXLHYTRYPTVLE 6
            SLMYL S TRPD+++ VSKLS +TSNP  +HW A               LHYTRYP VLE
Sbjct: 1087 SLMYLASATRPDISFAVSKLSRFTSNPGDDHWRALERVMRYLKGTVELGLHYTRYPAVLE 1146

Query: 5    G 3
            G
Sbjct: 1147 G 1147


>gb|AAX96832.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
            Japonica Group]
          Length = 1320

 Score =  315 bits (806), Expect(2) = e-158
 Identities = 158/305 (51%), Positives = 218/305 (71%), Gaps = 14/305 (4%)
 Frame = -2

Query: 1950 ERSTEPPELIHSDVCDLKYVQTCGGNKYFITFIDNSTKFYYVYLLKSKDEALAKFIIYKN 1771
            ER+  P EL+HSD+C++  V T GG +YF+T ID++T+F YVYLLK+KDEAL  F IYK 
Sbjct: 484  ERNLAPLELLHSDLCEMNGVLTKGGKRYFMTLIDDATRFCYVYLLKTKDEALDYFKIYKA 543

Query: 1770 EVENQLGKKIKRLRSDRGGEYEAPIGD-FCVQHGIVHEVTTPYSPQSNGVAERKNCTLRE 1594
            EVENQL +KIKRLRSDRGGE+ +   D FC +HGI+HE T PYSP+SNG+AERKN TL +
Sbjct: 544  EVENQLDRKIKRLRSDRGGEFFSNEFDLFCEEHGIIHERTPPYSPESNGIAERKNRTLTD 603

Query: 1593 MMNAMLISSGLPSNMWGEAILSNNYILNRIPRKKQDKTPYELWSGKKPSYKYL*VWESLA 1414
            ++NAML ++GLP   WGEA+L++N++LNR+P + +DKTPYE+W G+KPS  YL  W  LA
Sbjct: 604  LVNAMLDTAGLPKAWWGEALLTSNHVLNRVPNRNKDKTPYEIWIGRKPSLSYLRTWGCLA 663

Query: 1413 KVAVLVPKVIKIGLETMDCIFIEYPHNSTAYRFLVHDSKIPDIHKNTVIESRNASFLENV 1234
            KV V + K  K+G +T+DC+F+ Y H+S AYRFL+  S++PD+H  T++ESR+A+F E+ 
Sbjct: 664  KVNVPITKKRKLGPKTVDCVFLGYAHHSIAYRFLIVKSEVPDMHVGTIMESRDATFFESF 723

Query: 1233 FPCK-SMSGSSSLKRV----------NEEVQDPTKVQEVE--LRRSIQPKIAKTFGDDFE 1093
            FP K + SGS+    +           E   +    ++V    RRS + + AK+FGDDF 
Sbjct: 724  FPMKDTHSGSNQPSEIIPSSITPPEQTEHTHELVSEEDVSEAPRRSKRQRTAKSFGDDFT 783

Query: 1092 TYLLE 1078
             YL++
Sbjct: 784  VYLVD 788



 Score =  273 bits (697), Expect(2) = e-158
 Identities = 156/361 (43%), Positives = 221/361 (61%), Gaps = 5/361 (1%)
 Frame = -3

Query: 1070 PLTYDEAVNSSERHLWKESIKSEVDSIMQNYT*ELVDLPPRCKTLGSKWIFKRKMKPDGS 891
            P +  EA  S +   WKE+++SE+DSI+ N T E+ + P  CK +G KW+FK+K++PDG+
Sbjct: 791  PKSISEAYASPDADYWKEAVRSEMDSIIANGTWEVTERPYGCKPVGCKWVFKKKLRPDGT 850

Query: 890  IDKYKTRLVIKGYR*KEGLDYFDIYSPVTGINSIKMIHAIASLRNLNVKWMLKQLS*MGN 711
            I+KYK RLV KGY  KEG D+FD YSPV  + +I+++ ++A+   L V  M  + + +  
Sbjct: 851  IEKYKARLVAKGYTQKEGEDFFDTYSPVARLTTIRVLLSLAASHGLLVHQMDVKTAFLNG 910

Query: 710  *MKKFIWSNLR---VLDLQVRK--RKFVSWLNHCMV*NKRRKSGMRSLTTQ*FLVDLRFN 546
             + + I+ +     VL+ Q  K  +   S         +  +   ++LT+  F V    N
Sbjct: 911  ELDEEIYMDQPDGFVLEGQEGKVCKLLKSLYGLKQAPKQWHEKFDKTLTSAGFAV----N 966

Query: 545  ECDKCVYIKEMENEYVILCLYVDDILIVGSNDKIVKSTKNMLNSKFDMKDMRLADVILGI 366
            E DKCVY +    E VILCLYVDDILI G+N +++   K+ L+  FDMKD+ +ADVIL I
Sbjct: 967  EADKCVYYRHGGGEGVILCLYVDDILIFGTNIEVINEVKSFLSQNFDMKDLGVADVILNI 1026

Query: 365  KIIRTTDGLVLNQTHYIDKILENFNKNDSGIARTSLDTSLHLSKNRGEDVSQVEYARIIG 186
            K+IR  +G+ L Q+HY++KIL  F   DS  + T  D SL L KN+    +Q+EY++IIG
Sbjct: 1027 KLIRGENGITLLQSHYVEKILNRFGYIDSKPSPTPYDPSLSLRKNKRIARNQLEYSQIIG 1086

Query: 185  SLMYLMSYTRPDMAYVVSKLSGYTSNPSAEHWTAXXXXXXXXXXXXXXXLHYTRYPTVLE 6
            SLMYL S TRPD+++ VSKLS +TSNP  +HW A               LHYT YP VLE
Sbjct: 1087 SLMYLASATRPDISFAVSKLSRFTSNPGDDHWRALERVMRYLKGTVELGLHYTGYPAVLE 1146

Query: 5    G 3
            G
Sbjct: 1147 G 1147


>gb|AAT69606.1| putative polyprotein [Oryza sativa Japonica Group]
            gi|53749238|gb|AAU90098.1| putative polyprotein [Oryza
            sativa Japonica Group]
          Length = 1320

 Score =  315 bits (806), Expect(2) = e-158
 Identities = 158/305 (51%), Positives = 218/305 (71%), Gaps = 14/305 (4%)
 Frame = -2

Query: 1950 ERSTEPPELIHSDVCDLKYVQTCGGNKYFITFIDNSTKFYYVYLLKSKDEALAKFIIYKN 1771
            ER+  P EL+HSD+C++  V T GG +YF+T ID++T+F YVYLLK+KDEAL  F IYK 
Sbjct: 484  ERNLAPLELLHSDLCEMNGVLTKGGKRYFMTLIDDATRFCYVYLLKTKDEALDYFKIYKA 543

Query: 1770 EVENQLGKKIKRLRSDRGGEYEAPIGD-FCVQHGIVHEVTTPYSPQSNGVAERKNCTLRE 1594
            EVENQL +KIKRLRSDRGGE+ +   D FC +HGI+HE T PYSP+SNG+AERKN TL +
Sbjct: 544  EVENQLDRKIKRLRSDRGGEFFSNEFDLFCEEHGIIHERTPPYSPESNGIAERKNRTLTD 603

Query: 1593 MMNAMLISSGLPSNMWGEAILSNNYILNRIPRKKQDKTPYELWSGKKPSYKYL*VWESLA 1414
            ++NAML ++GLP   WGEA+L++N++LNR+P + +DKTPYE+W G+KPS  YL  W  LA
Sbjct: 604  LVNAMLDTAGLPKAWWGEALLTSNHVLNRVPNRNKDKTPYEIWIGRKPSLSYLRTWGCLA 663

Query: 1413 KVAVLVPKVIKIGLETMDCIFIEYPHNSTAYRFLVHDSKIPDIHKNTVIESRNASFLENV 1234
            KV V + K  K+G +T+DC+F+ Y H+S AYRFL+  S++PD+H  T++ESR+A+F E+ 
Sbjct: 664  KVNVPITKKRKLGPKTVDCVFLGYAHHSIAYRFLIVKSEVPDMHVGTIMESRDATFFESF 723

Query: 1233 FPCK-SMSGSSSLKRV----------NEEVQDPTKVQEVE--LRRSIQPKIAKTFGDDFE 1093
            FP K + SGS+    +           E   +    ++V    RRS + + AK+FGDDF 
Sbjct: 724  FPMKDTHSGSNQPSEIIPSSITPPEQTEHTHELVSEEDVSEAPRRSKRQRTAKSFGDDFT 783

Query: 1092 TYLLE 1078
             YL++
Sbjct: 784  VYLVD 788



 Score =  273 bits (697), Expect(2) = e-158
 Identities = 156/361 (43%), Positives = 222/361 (61%), Gaps = 5/361 (1%)
 Frame = -3

Query: 1070 PLTYDEAVNSSERHLWKESIKSEVDSIMQNYT*ELVDLPPRCKTLGSKWIFKRKMKPDGS 891
            P +  EA  S + + WKE+++SE+DSI+ N T E+ + P  CK +G KW+FK+K++PDG+
Sbjct: 791  PKSISEAYASPDANYWKEAVRSEMDSIIANGTWEVTERPYGCKPVGCKWVFKKKLRPDGT 850

Query: 890  IDKYKTRLVIKGYR*KEGLDYFDIYSPVTGINSIKMIHAIASLRNLNVKWMLKQLS*MGN 711
            I+KYK RLV KGY  KEG D+FD YSPV  + +I+++ ++A+   L V  M  + + +  
Sbjct: 851  IEKYKARLVAKGYTQKEGEDFFDTYSPVARLTTIRVLLSLAASHGLLVHQMDVKTAFLNG 910

Query: 710  *MKKFIWSNLR---VLDLQVRK--RKFVSWLNHCMV*NKRRKSGMRSLTTQ*FLVDLRFN 546
             + + I+ +     VL+ Q  K  +   S         +  +   ++LT+  F V    N
Sbjct: 911  ELDEEIYMDQPDGFVLEGQECKVCKLLKSLYGLKQAPKQWHEKFDKTLTSAGFAV----N 966

Query: 545  ECDKCVYIKEMENEYVILCLYVDDILIVGSNDKIVKSTKNMLNSKFDMKDMRLADVILGI 366
            E DKCVY +    E VILCLYVDDILI G+N +++   K+ L+  FDMKD+ +ADVIL I
Sbjct: 967  EADKCVYYRHGGGEGVILCLYVDDILIFGTNLEVINEVKSFLSQNFDMKDLGVADVILNI 1026

Query: 365  KIIRTTDGLVLNQTHYIDKILENFNKNDSGIARTSLDTSLHLSKNRGEDVSQVEYARIIG 186
            K+IR  +G+ L Q+HY++KIL  F   DS  + T  D SL L KN+    +Q+EY++IIG
Sbjct: 1027 KLIRGENGITLLQSHYVEKILNRFGYIDSKPSPTPYDPSLSLRKNKRIARNQLEYSQIIG 1086

Query: 185  SLMYLMSYTRPDMAYVVSKLSGYTSNPSAEHWTAXXXXXXXXXXXXXXXLHYTRYPTVLE 6
            SLMYL S TRPD+++ VSKLS +TSNP  +HW A               LHYT YP VLE
Sbjct: 1087 SLMYLASATRPDISFAVSKLSRFTSNPGDDHWRALERVMRYLKGTVELGLHYTGYPAVLE 1146

Query: 5    G 3
            G
Sbjct: 1147 G 1147


>gb|ABF98943.1| retrotransposon protein, putative, unclassified, expressed [Oryza
            sativa Japonica Group]
          Length = 1460

 Score =  315 bits (806), Expect(2) = e-158
 Identities = 158/305 (51%), Positives = 218/305 (71%), Gaps = 14/305 (4%)
 Frame = -2

Query: 1950 ERSTEPPELIHSDVCDLKYVQTCGGNKYFITFIDNSTKFYYVYLLKSKDEALAKFIIYKN 1771
            ER+  P EL+HSD+C++  V T GG +YF+T ID++T+F YVYLLK+KDEAL  F IYK 
Sbjct: 484  ERNLAPLELLHSDLCEMNGVLTKGGKRYFMTLIDDATRFCYVYLLKTKDEALDYFKIYKA 543

Query: 1770 EVENQLGKKIKRLRSDRGGEYEAPIGD-FCVQHGIVHEVTTPYSPQSNGVAERKNCTLRE 1594
            EVENQL +KIKRLRSDRGGE+ +   D FC +HGI+HE T PYSP+SNG+AERKN TL +
Sbjct: 544  EVENQLDRKIKRLRSDRGGEFFSNEFDLFCEEHGIIHERTPPYSPESNGIAERKNRTLTD 603

Query: 1593 MMNAMLISSGLPSNMWGEAILSNNYILNRIPRKKQDKTPYELWSGKKPSYKYL*VWESLA 1414
            ++NAML ++GLP   WGEA+L++N++LNR+P + +DKTPYE+W G+KPS  YL  W  LA
Sbjct: 604  LVNAMLDTAGLPKAWWGEALLTSNHVLNRVPNRNKDKTPYEIWIGRKPSLSYLRTWGCLA 663

Query: 1413 KVAVLVPKVIKIGLETMDCIFIEYPHNSTAYRFLVHDSKIPDIHKNTVIESRNASFLENV 1234
            KV V + K  K+G +T+DC+F+ Y H+S AYRFL+  S++PD+H  T++ESR+A+F E+ 
Sbjct: 664  KVNVPITKKRKLGPKTVDCVFLGYAHHSIAYRFLIVKSEVPDMHVGTIMESRDATFFESF 723

Query: 1233 FPCK-SMSGSSSLKRV----------NEEVQDPTKVQEVE--LRRSIQPKIAKTFGDDFE 1093
            FP K + SGS+    +           E   +    ++V    RRS + + AK+FGDDF 
Sbjct: 724  FPMKDTHSGSNQPSEIIPSSITPPEQTEHTHELVSEEDVSEAPRRSKRQRTAKSFGDDFT 783

Query: 1092 TYLLE 1078
             YL++
Sbjct: 784  VYLVD 788



 Score =  272 bits (696), Expect(2) = e-158
 Identities = 156/361 (43%), Positives = 221/361 (61%), Gaps = 5/361 (1%)
 Frame = -3

Query: 1070 PLTYDEAVNSSERHLWKESIKSEVDSIMQNYT*ELVDLPPRCKTLGSKWIFKRKMKPDGS 891
            P +  EA  S +   WKE+++SE+DSI+ N T E+ + P  CK +G KW+FK+K++PDG+
Sbjct: 791  PKSISEAYASPDADYWKEAVRSEMDSIIANGTWEVTERPYGCKPVGCKWVFKKKLRPDGT 850

Query: 890  IDKYKTRLVIKGYR*KEGLDYFDIYSPVTGINSIKMIHAIASLRNLNVKWMLKQLS*MGN 711
            I+KYK RLV KGY  KEG D+FD YSPV  + +I+++ ++A+   L V  M  + + +  
Sbjct: 851  IEKYKARLVAKGYTQKEGEDFFDTYSPVARLTTIRVLLSLAASHGLLVHQMDVKTAFLNG 910

Query: 710  *MKKFIWSNLR---VLDLQVRK--RKFVSWLNHCMV*NKRRKSGMRSLTTQ*FLVDLRFN 546
             + + I+ +     VL+ Q  K  +   S         +  +   ++LT+  F V    N
Sbjct: 911  ELDEEIYMDQPDGFVLEGQEGKVCKLLKSLYGLKQAPKQWHEKFDKTLTSAGFAV----N 966

Query: 545  ECDKCVYIKEMENEYVILCLYVDDILIVGSNDKIVKSTKNMLNSKFDMKDMRLADVILGI 366
            E DKCVY +    E VILCLYVDDILI G+N +++   K+ L+  FDMKD+ +ADVIL I
Sbjct: 967  EADKCVYYRHGGGEGVILCLYVDDILIFGTNLEVINEVKSFLSQNFDMKDLGVADVILNI 1026

Query: 365  KIIRTTDGLVLNQTHYIDKILENFNKNDSGIARTSLDTSLHLSKNRGEDVSQVEYARIIG 186
            K+IR  +G+ L Q+HY++KIL  F   DS  + T  D SL L KN+    +Q+EY++IIG
Sbjct: 1027 KLIRGENGITLLQSHYVEKILNRFGYIDSKPSPTPYDPSLSLRKNKRIARNQLEYSQIIG 1086

Query: 185  SLMYLMSYTRPDMAYVVSKLSGYTSNPSAEHWTAXXXXXXXXXXXXXXXLHYTRYPTVLE 6
            SLMYL S TRPD+++ VSKLS +TSNP  +HW A               LHYT YP VLE
Sbjct: 1087 SLMYLASATRPDISFAVSKLSRFTSNPGDDHWRALERVMRYLKGTVELGLHYTGYPAVLE 1146

Query: 5    G 3
            G
Sbjct: 1147 G 1147


>gb|AAN61480.1| Putative polyprotein from transposon TNT [Oryza sativa Japonica
            Group]
          Length = 1911

 Score =  315 bits (806), Expect(2) = e-158
 Identities = 158/305 (51%), Positives = 218/305 (71%), Gaps = 14/305 (4%)
 Frame = -2

Query: 1950 ERSTEPPELIHSDVCDLKYVQTCGGNKYFITFIDNSTKFYYVYLLKSKDEALAKFIIYKN 1771
            ER+  P EL+HSD+C++  V T GG +YF+T ID++T+F YVYLLK+KDEAL  F IYK 
Sbjct: 484  ERNLAPLELLHSDLCEMNGVLTKGGKRYFMTLIDDATRFCYVYLLKTKDEALDYFKIYKA 543

Query: 1770 EVENQLGKKIKRLRSDRGGEYEAPIGD-FCVQHGIVHEVTTPYSPQSNGVAERKNCTLRE 1594
            EVENQL +KIKRLRSDRGGE+ +   D FC +HGI+HE T PYSP+SNG+AERKN TL +
Sbjct: 544  EVENQLDRKIKRLRSDRGGEFFSNEFDLFCEEHGIIHERTPPYSPESNGIAERKNRTLTD 603

Query: 1593 MMNAMLISSGLPSNMWGEAILSNNYILNRIPRKKQDKTPYELWSGKKPSYKYL*VWESLA 1414
            ++NAML ++GLP   WGEA+L++N++LNR+P + +DKTPYE+W G+KPS  YL  W  LA
Sbjct: 604  LVNAMLDTAGLPKAWWGEALLTSNHVLNRVPNRNKDKTPYEIWIGRKPSLSYLRTWGCLA 663

Query: 1413 KVAVLVPKVIKIGLETMDCIFIEYPHNSTAYRFLVHDSKIPDIHKNTVIESRNASFLENV 1234
            KV V + K  K+G +T+DC+F+ Y H+S AYRFL+  S++PD+H  T++ESR+A+F E+ 
Sbjct: 664  KVNVPITKKRKLGPKTVDCVFLGYAHHSIAYRFLIVKSEVPDMHVGTIMESRDATFFESF 723

Query: 1233 FPCK-SMSGSSSLKRV----------NEEVQDPTKVQEVE--LRRSIQPKIAKTFGDDFE 1093
            FP K + SGS+    +           E   +    ++V    RRS + + AK+FGDDF 
Sbjct: 724  FPMKDTHSGSNQPSEIIPSSITPPEQTEHTHELVSEEDVSEAPRRSKRQRTAKSFGDDFT 783

Query: 1092 TYLLE 1078
             YL++
Sbjct: 784  VYLVD 788



 Score =  272 bits (695), Expect(2) = e-158
 Identities = 151/357 (42%), Positives = 213/357 (59%), Gaps = 1/357 (0%)
 Frame = -3

Query: 1070 PLTYDEAVNSSERHLWKESIKSEVDSIMQNYT*ELVDLPPRCKTLGSKWIFKRKMKPDGS 891
            P +  EA  S +   WKE+++SE+DSI+ N T E+ + P  CK +G KW+FK+K++PDG+
Sbjct: 791  PKSISEAYASPDADYWKEAVRSEMDSIIANGTWEVTERPYGCKPVGCKWVFKKKLRPDGT 850

Query: 890  IDKYKTRLVIKGYR*KEGLDYFDIYSPVTGINSIKMIHAIASLRNLNVKWMLKQLS*MGN 711
            I+KYK RLV KGY  KEG D+FD YSPV  + +I+++ ++A+   L V  M  + + +  
Sbjct: 851  IEKYKARLVAKGYTQKEGEDFFDTYSPVARLTTIRVLLSLAASHGLLVHQMDVKTAFLNG 910

Query: 710  *MKKFIWSNLRV-LDLQVRKRKFVSWLNHCMV*NKRRKSGMRSLTTQ*FLVDLRFNECDK 534
             + + I+ +      L+ ++ K    L       +  K                 NE DK
Sbjct: 911  ELDEEIYMDQPDGFVLEGQEGKVCKLLKSLYGLKQAPKQWHEKFDKTLTFAGFAVNEADK 970

Query: 533  CVYIKEMENEYVILCLYVDDILIVGSNDKIVKSTKNMLNSKFDMKDMRLADVILGIKIIR 354
            CVY +    E VILCLYVDDILI G+N +++   K+ L+  FDMKD+ +ADVIL IK+IR
Sbjct: 971  CVYYRHGGGEGVILCLYVDDILIFGTNIEVINEVKSFLSQNFDMKDLGVADVILNIKLIR 1030

Query: 353  TTDGLVLNQTHYIDKILENFNKNDSGIARTSLDTSLHLSKNRGEDVSQVEYARIIGSLMY 174
              +G+ L Q+HY++KIL  F   DS  + T  D SL L KN+    +Q+EY++IIGSLMY
Sbjct: 1031 GENGITLLQSHYVEKILNRFGYIDSKPSPTPYDPSLSLRKNKRIARNQLEYSQIIGSLMY 1090

Query: 173  LMSYTRPDMAYVVSKLSGYTSNPSAEHWTAXXXXXXXXXXXXXXXLHYTRYPTVLEG 3
            L S TRPD+++ VSKLS +TSNP  +HW A               LHYT YP VLEG
Sbjct: 1091 LASATRPDISFAVSKLSRFTSNPGDDHWRALERVMRYLKGTVELGLHYTGYPAVLEG 1147


>gb|AAT58810.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1320

 Score =  316 bits (810), Expect(2) = e-158
 Identities = 160/305 (52%), Positives = 220/305 (72%), Gaps = 14/305 (4%)
 Frame = -2

Query: 1950 ERSTEPPELIHSDVCDLKYVQTCGGNKYFITFIDNSTKFYYVYLLKSKDEALAKFIIYKN 1771
            ER+  P EL+HSD+C++  V T GG +YF+T ID++T+F YVYLLK+KDEAL  F IYK 
Sbjct: 484  ERNLAPLELLHSDLCEMNGVLTKGGKRYFMTLIDDATRFCYVYLLKTKDEALDYFKIYKA 543

Query: 1770 EVENQLGKKIKRLRSDRGGEYEAPIGD-FCVQHGIVHEVTTPYSPQSNGVAERKNCTLRE 1594
            EVENQL +KIKRLRSDRGGE+ +   D FC +HGI+HE T PYSP+SNG+AERKN TL +
Sbjct: 544  EVENQLDRKIKRLRSDRGGEFFSNEFDLFCEEHGIIHERTPPYSPESNGIAERKNRTLTD 603

Query: 1593 MMNAMLISSGLPSNMWGEAILSNNYILNRIPRKKQDKTPYELWSGKKPSYKYL*VWESLA 1414
            ++NAML ++GLP   WGEA+L++N++LNR+P + +DKTPYE+W G+KPS  YL  W  LA
Sbjct: 604  LVNAMLDTAGLPKAWWGEALLTSNHVLNRVPNRNKDKTPYEIWIGRKPSLSYLRTWGCLA 663

Query: 1413 KVAVLVPKVIKIGLETMDCIFIEYPHNSTAYRFLVHDSKIPDIHKNTVIESRNASFLENV 1234
            KV V + K  K+G +T+DC+F+ Y H+S AYRFL+  S+IPD+H  T++ESR+A+F E+ 
Sbjct: 664  KVNVPITKKRKLGPKTVDCVFLGYAHHSIAYRFLIVKSEIPDMHVGTIMESRDATFFESF 723

Query: 1233 FPCK-SMSGSSSLKRVNEEVQDPTK--------VQEVEL----RRSIQPKIAKTFGDDFE 1093
            FP K + SGS+    +   +  P +        V E ++    RRS + + AK+FGDDF 
Sbjct: 724  FPMKDTHSGSNQPSEIIPSLITPPEQTEHTHELVSEEDVSEAPRRSKRQRTAKSFGDDFT 783

Query: 1092 TYLLE 1078
             YL++
Sbjct: 784  VYLVD 788



 Score =  270 bits (690), Expect(2) = e-158
 Identities = 155/361 (42%), Positives = 221/361 (61%), Gaps = 5/361 (1%)
 Frame = -3

Query: 1070 PLTYDEAVNSSERHLWKESIKSEVDSIMQNYT*ELVDLPPRCKTLGSKWIFKRKMKPDGS 891
            P +  EA  S +   WKE+++SE+DSI+ N T E+ + P  CK +G KW+FK+K++PDG+
Sbjct: 791  PKSISEAYASPDADYWKEAVRSEMDSIIANGTWEVTERPYGCKPVGCKWVFKKKLRPDGT 850

Query: 890  IDKYKTRLVIKGYR*KEGLDYFDIYSPVTGINSIKMIHAIASLRNLNVKWMLKQLS*MGN 711
            I+KYK RLV KGY  KEG D+FD YSPV  + +I+++ ++A+   L V  M  + + +  
Sbjct: 851  IEKYKARLVAKGYTQKEGEDFFDTYSPVARLTTIRVLLSLAASHGLLVHQMDVKTAFLNG 910

Query: 710  *MKKFIWSNLR---VLDLQVRK--RKFVSWLNHCMV*NKRRKSGMRSLTTQ*FLVDLRFN 546
             + + I+ +     V++ Q  K  +   S         +  +   ++LT+  F V    N
Sbjct: 911  ELDEEIYMDQPDGFVVEGQEGKVCKLLKSLYGLKQAPKQWHEKFDKTLTSAGFAV----N 966

Query: 545  ECDKCVYIKEMENEYVILCLYVDDILIVGSNDKIVKSTKNMLNSKFDMKDMRLADVILGI 366
            E DKCVY +    E VILCLYVDDILI G+N +++   K+ L+  FDMKD+ +ADVIL I
Sbjct: 967  EADKCVYYRHGGGEGVILCLYVDDILIFGTNLEVINEVKSFLSQNFDMKDLGVADVILNI 1026

Query: 365  KIIRTTDGLVLNQTHYIDKILENFNKNDSGIARTSLDTSLHLSKNRGEDVSQVEYARIIG 186
            K+IR  +G+ L Q+HY++KIL  F   DS  + T  D SL L KN+    +Q+EY++IIG
Sbjct: 1027 KLIRGENGITLLQSHYVEKILNRFGYIDSKPSPTPYDHSLLLRKNKRIARNQLEYSQIIG 1086

Query: 185  SLMYLMSYTRPDMAYVVSKLSGYTSNPSAEHWTAXXXXXXXXXXXXXXXLHYTRYPTVLE 6
            SLMYL S TRPD+++ VSKLS +TSNP  +HW A               LHYT YP VLE
Sbjct: 1087 SLMYLASATRPDISFAVSKLSRFTSNPGDDHWRALERVMRYLKGTVELGLHYTGYPVVLE 1146

Query: 5    G 3
            G
Sbjct: 1147 G 1147


>gb|AAT38001.1| Putative polyprotein [Oryza sativa Japonica Group]
          Length = 1297

 Score =  316 bits (810), Expect(2) = e-158
 Identities = 160/305 (52%), Positives = 220/305 (72%), Gaps = 14/305 (4%)
 Frame = -2

Query: 1950 ERSTEPPELIHSDVCDLKYVQTCGGNKYFITFIDNSTKFYYVYLLKSKDEALAKFIIYKN 1771
            ER+  P EL+HSD+C++  V T GG +YF+T ID++T+F YVYLLK+KDEAL  F IYK 
Sbjct: 484  ERNLAPLELLHSDLCEMNGVLTKGGKRYFMTLIDDATRFCYVYLLKTKDEALDYFKIYKA 543

Query: 1770 EVENQLGKKIKRLRSDRGGEYEAPIGD-FCVQHGIVHEVTTPYSPQSNGVAERKNCTLRE 1594
            EVENQL +KIKRLRSDRGGE+ +   D FC +HGI+HE T PYSP+SNG+AERKN TL +
Sbjct: 544  EVENQLDRKIKRLRSDRGGEFFSNEFDLFCEEHGIIHERTPPYSPESNGIAERKNRTLTD 603

Query: 1593 MMNAMLISSGLPSNMWGEAILSNNYILNRIPRKKQDKTPYELWSGKKPSYKYL*VWESLA 1414
            ++NAML ++GLP   WGEA+L++N++LNR+P + +DKTPYE+W G+KPS  YL  W  LA
Sbjct: 604  LVNAMLDTAGLPKAWWGEALLTSNHVLNRVPNRNKDKTPYEIWIGRKPSLSYLRTWGCLA 663

Query: 1413 KVAVLVPKVIKIGLETMDCIFIEYPHNSTAYRFLVHDSKIPDIHKNTVIESRNASFLENV 1234
            KV V + K  K+G +T+DC+F+ Y H+S AYRFL+  S+IPD+H  T++ESR+A+F E+ 
Sbjct: 664  KVNVPITKKRKLGPKTVDCVFLGYAHHSIAYRFLIVKSEIPDMHVGTIMESRDATFFESF 723

Query: 1233 FPCK-SMSGSSSLKRVNEEVQDPTK--------VQEVEL----RRSIQPKIAKTFGDDFE 1093
            FP K + SGS+    +   +  P +        V E ++    RRS + + AK+FGDDF 
Sbjct: 724  FPMKDTHSGSNQPSEIIPSLITPPEQTEHTHELVSEEDVSEAPRRSKRQRTAKSFGDDFT 783

Query: 1092 TYLLE 1078
             YL++
Sbjct: 784  VYLVD 788



 Score =  270 bits (690), Expect(2) = e-158
 Identities = 155/361 (42%), Positives = 221/361 (61%), Gaps = 5/361 (1%)
 Frame = -3

Query: 1070 PLTYDEAVNSSERHLWKESIKSEVDSIMQNYT*ELVDLPPRCKTLGSKWIFKRKMKPDGS 891
            P +  EA  S +   WKE+++SE+DSI+ N T E+ + P  CK +G KW+FK+K++PDG+
Sbjct: 791  PKSISEAYASPDADYWKEAVRSEMDSIIANGTWEVTERPYGCKPVGCKWVFKKKLRPDGT 850

Query: 890  IDKYKTRLVIKGYR*KEGLDYFDIYSPVTGINSIKMIHAIASLRNLNVKWMLKQLS*MGN 711
            I+KYK RLV KGY  KEG D+FD YSPV  + +I+++ ++A+   L V  M  + + +  
Sbjct: 851  IEKYKARLVAKGYTQKEGEDFFDTYSPVARLTTIRVLLSLAASHGLLVHQMDVKTAFLNG 910

Query: 710  *MKKFIWSNLR---VLDLQVRK--RKFVSWLNHCMV*NKRRKSGMRSLTTQ*FLVDLRFN 546
             + + I+ +     V++ Q  K  +   S         +  +   ++LT+  F V    N
Sbjct: 911  ELDEEIYMDQPDGFVVEGQEGKVCKLLKSLYGLKQAPKQWHEKFDKTLTSAGFAV----N 966

Query: 545  ECDKCVYIKEMENEYVILCLYVDDILIVGSNDKIVKSTKNMLNSKFDMKDMRLADVILGI 366
            E DKCVY +    E VILCLYVDDILI G+N +++   K+ L+  FDMKD+ +ADVIL I
Sbjct: 967  EADKCVYYRHGGGEGVILCLYVDDILIFGTNLEVINEVKSFLSQNFDMKDLGVADVILNI 1026

Query: 365  KIIRTTDGLVLNQTHYIDKILENFNKNDSGIARTSLDTSLHLSKNRGEDVSQVEYARIIG 186
            K+IR  +G+ L Q+HY++KIL  F   DS  + T  D SL L KN+    +Q+EY++IIG
Sbjct: 1027 KLIRGENGITLLQSHYVEKILNRFGYIDSKPSPTPYDHSLLLRKNKRIARNQLEYSQIIG 1086

Query: 185  SLMYLMSYTRPDMAYVVSKLSGYTSNPSAEHWTAXXXXXXXXXXXXXXXLHYTRYPTVLE 6
            SLMYL S TRPD+++ VSKLS +TSNP  +HW A               LHYT YP VLE
Sbjct: 1087 SLMYLASATRPDISFAVSKLSRFTSNPGDDHWRALERVMRYLKGTVELGLHYTGYPVVLE 1146

Query: 5    G 3
            G
Sbjct: 1147 G 1147


>gb|AAU44026.2| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1391

 Score =  315 bits (807), Expect(2) = e-157
 Identities = 159/305 (52%), Positives = 218/305 (71%), Gaps = 14/305 (4%)
 Frame = -2

Query: 1950 ERSTEPPELIHSDVCDLKYVQTCGGNKYFITFIDNSTKFYYVYLLKSKDEALAKFIIYKN 1771
            ER+  P EL+HSD+C++  V T GG +YF+T ID++T+F YVYLLK+KDEAL  F IYK 
Sbjct: 573  ERNLAPLELLHSDLCEMNGVLTKGGKRYFMTLIDDATRFCYVYLLKTKDEALDYFKIYKA 632

Query: 1770 EVENQLGKKIKRLRSDRGGEYEAPIGD-FCVQHGIVHEVTTPYSPQSNGVAERKNCTLRE 1594
            EVENQL +KIKRLRSDRGGE+ +   D FC +HGI+HE T PYSP+SNG+AERKN TL +
Sbjct: 633  EVENQLDRKIKRLRSDRGGEFFSNEFDLFCEEHGIIHERTPPYSPESNGIAERKNRTLTD 692

Query: 1593 MMNAMLISSGLPSNMWGEAILSNNYILNRIPRKKQDKTPYELWSGKKPSYKYL*VWESLA 1414
            ++NAML ++GLP   WGEA+L++N++LNRIP + +DKTPYE+W G+KPS  YL  W  LA
Sbjct: 693  LVNAMLDTAGLPKAWWGEALLTSNHVLNRIPNRNKDKTPYEIWIGRKPSLSYLRTWGCLA 752

Query: 1413 KVAVLVPKVIKIGLETMDCIFIEYPHNSTAYRFLVHDSKIPDIHKNTVIESRNASFLENV 1234
            KV V + K  K+G +T+DC+F+ Y H+S AYRFL+  S++PD+H  T++ESR+A+F E+ 
Sbjct: 753  KVNVPITKKRKLGPKTVDCVFLGYAHHSIAYRFLIVKSEVPDMHVGTIMESRDATFFESF 812

Query: 1233 FPCK-SMSGSSSLKRV----------NEEVQDPTKVQEVE--LRRSIQPKIAKTFGDDFE 1093
            FP K + SGS+    +           E   +    ++V    RRS + + AK+FGDDF 
Sbjct: 813  FPMKDTHSGSNQPSEIIPSSITPPEQTEHTHELVSEEDVSEAPRRSKRQRTAKSFGDDFT 872

Query: 1092 TYLLE 1078
             YL++
Sbjct: 873  VYLVD 877



 Score =  270 bits (691), Expect(2) = e-157
 Identities = 155/361 (42%), Positives = 221/361 (61%), Gaps = 5/361 (1%)
 Frame = -3

Query: 1070 PLTYDEAVNSSERHLWKESIKSEVDSIMQNYT*ELVDLPPRCKTLGSKWIFKRKMKPDGS 891
            P +  EA  S +   WKE+++SE+DSI+ N T E+ + P  CK +G KW+FK+K++PDG+
Sbjct: 880  PKSISEAYASPDADYWKEAVRSEMDSIIANGTWEVTERPYGCKPVGCKWVFKKKLRPDGT 939

Query: 890  IDKYKTRLVIKGYR*KEGLDYFDIYSPVTGINSIKMIHAIASLRNLNVKWMLKQLS*MGN 711
            I+KYK RLV KGY  KEG D+FD YSPV  + +I+++ ++A+   L V  M  + + +  
Sbjct: 940  IEKYKARLVAKGYTQKEGEDFFDTYSPVARLTTIRVLLSLAASHGLLVHQMDVKTAFLNG 999

Query: 710  *MKKFIWSNLR---VLDLQVRK--RKFVSWLNHCMV*NKRRKSGMRSLTTQ*FLVDLRFN 546
             + + I+ +     V++ Q  K  +   S         +  +   ++LT+  F V    N
Sbjct: 1000 ELDEEIYMDQPDGFVVEGQEGKVCKLLKSLYGLKQAPKQWHEKFDKTLTSAGFAV----N 1055

Query: 545  ECDKCVYIKEMENEYVILCLYVDDILIVGSNDKIVKSTKNMLNSKFDMKDMRLADVILGI 366
            E DKCVY +    E VILCLYVDDILI G+N +++   K+ L+  FDMKD+ +ADVIL I
Sbjct: 1056 EADKCVYYRHGGGEGVILCLYVDDILIFGTNLEVINEVKSFLSQNFDMKDLGVADVILNI 1115

Query: 365  KIIRTTDGLVLNQTHYIDKILENFNKNDSGIARTSLDTSLHLSKNRGEDVSQVEYARIIG 186
            K+IR  +G+ L Q+HY++KIL  F   DS  + T  D SL L KN+    +Q+EY++IIG
Sbjct: 1116 KLIRGENGITLLQSHYVEKILNRFGYIDSKPSPTPYDPSLLLRKNKRIARNQLEYSQIIG 1175

Query: 185  SLMYLMSYTRPDMAYVVSKLSGYTSNPSAEHWTAXXXXXXXXXXXXXXXLHYTRYPTVLE 6
            SLMYL S TRPD+++ VSKLS +TSNP  +HW A               LHYT YP VLE
Sbjct: 1176 SLMYLASATRPDISFAVSKLSRFTSNPGDDHWRALERVMRYLKGTVELGLHYTGYPAVLE 1235

Query: 5    G 3
            G
Sbjct: 1236 G 1236


>gb|ABA97938.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1320

 Score =  315 bits (806), Expect(2) = e-157
 Identities = 158/305 (51%), Positives = 218/305 (71%), Gaps = 14/305 (4%)
 Frame = -2

Query: 1950 ERSTEPPELIHSDVCDLKYVQTCGGNKYFITFIDNSTKFYYVYLLKSKDEALAKFIIYKN 1771
            ER+  P EL+HSD+C++  V T GG +YF+T ID++T+F YVYLLK+KDEAL  F IYK 
Sbjct: 484  ERNLAPLELLHSDLCEMNGVLTKGGKRYFMTLIDDATRFCYVYLLKTKDEALDYFKIYKA 543

Query: 1770 EVENQLGKKIKRLRSDRGGEYEAPIGD-FCVQHGIVHEVTTPYSPQSNGVAERKNCTLRE 1594
            EVENQL +KIKRLRSDRGGE+ +   D FC +HGI+HE T PYSP+SNG+AERKN TL +
Sbjct: 544  EVENQLDRKIKRLRSDRGGEFFSNEFDLFCEEHGIIHERTPPYSPESNGIAERKNRTLTD 603

Query: 1593 MMNAMLISSGLPSNMWGEAILSNNYILNRIPRKKQDKTPYELWSGKKPSYKYL*VWESLA 1414
            ++NAML ++GLP   WGEA+L++N++LNR+P + +DKTPYE+W G+KPS  YL  W  LA
Sbjct: 604  LVNAMLDTAGLPKAWWGEALLTSNHVLNRVPNRNKDKTPYEIWIGRKPSLSYLRTWGCLA 663

Query: 1413 KVAVLVPKVIKIGLETMDCIFIEYPHNSTAYRFLVHDSKIPDIHKNTVIESRNASFLENV 1234
            KV V + K  K+G +T+DC+F+ Y H+S AYRFL+  S++PD+H  T++ESR+A+F E+ 
Sbjct: 664  KVNVPITKKRKLGPKTVDCVFLGYAHHSIAYRFLIVKSEVPDMHVGTIMESRDATFFESF 723

Query: 1233 FPCK-SMSGSSSLKRV----------NEEVQDPTKVQEVE--LRRSIQPKIAKTFGDDFE 1093
            FP K + SGS+    +           E   +    ++V    RRS + + AK+FGDDF 
Sbjct: 724  FPMKDTHSGSNQPSEIIPSSITPPEQTEHTHELVSEEDVSEAPRRSKRQRTAKSFGDDFT 783

Query: 1092 TYLLE 1078
             YL++
Sbjct: 784  VYLVD 788



 Score =  270 bits (691), Expect(2) = e-157
 Identities = 155/361 (42%), Positives = 221/361 (61%), Gaps = 5/361 (1%)
 Frame = -3

Query: 1070 PLTYDEAVNSSERHLWKESIKSEVDSIMQNYT*ELVDLPPRCKTLGSKWIFKRKMKPDGS 891
            P +  EA  S +   WKE+++SE+DSI+ N T E+ + P  CK +G KW+FK+K++PDG+
Sbjct: 791  PKSISEAYASPDADYWKEAVRSEMDSIIANGTWEVTERPYGCKPVGCKWVFKKKLRPDGT 850

Query: 890  IDKYKTRLVIKGYR*KEGLDYFDIYSPVTGINSIKMIHAIASLRNLNVKWMLKQLS*MGN 711
            I+KYK RLV KGY  KEG D+FD YSPV  + +I+++ ++A+   L V  M  + + +  
Sbjct: 851  IEKYKARLVAKGYTQKEGEDFFDTYSPVARLTTIRVLLSLAASHGLLVHQMDVKTAFLNG 910

Query: 710  *MKKFIWSNLR---VLDLQVRK--RKFVSWLNHCMV*NKRRKSGMRSLTTQ*FLVDLRFN 546
             + + I+ +     V++ Q  K  +   S         +  +   ++LT+  F V    N
Sbjct: 911  ELDEEIYMDQPDGFVVEGQEGKVCKLLKSLYGLKQAPKQWHEKFDKTLTSAGFAV----N 966

Query: 545  ECDKCVYIKEMENEYVILCLYVDDILIVGSNDKIVKSTKNMLNSKFDMKDMRLADVILGI 366
            E DKCVY +    E VILCLYVDDILI G+N +++   K+ L+  FDMKD+ +ADVIL I
Sbjct: 967  EADKCVYYRHGGGEGVILCLYVDDILIFGTNLEVINEVKSFLSQNFDMKDLGVADVILNI 1026

Query: 365  KIIRTTDGLVLNQTHYIDKILENFNKNDSGIARTSLDTSLHLSKNRGEDVSQVEYARIIG 186
            K+IR  +G+ L Q+HY++KIL  F   DS  + T  D SL L KN+    +Q+EY++IIG
Sbjct: 1027 KLIRGENGITLLQSHYVEKILNRFGYIDSKPSPTPYDPSLLLRKNKRIARNQLEYSQIIG 1086

Query: 185  SLMYLMSYTRPDMAYVVSKLSGYTSNPSAEHWTAXXXXXXXXXXXXXXXLHYTRYPTVLE 6
            SLMYL S TRPD+++ VSKLS +TSNP  +HW A               LHYT YP VLE
Sbjct: 1087 SLMYLASATRPDISFAVSKLSRFTSNPGDDHWRALELVMRYLKGTVELGLHYTGYPAVLE 1146

Query: 5    G 3
            G
Sbjct: 1147 G 1147


>gb|AAP54573.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1320

 Score =  315 bits (806), Expect(2) = e-157
 Identities = 158/305 (51%), Positives = 218/305 (71%), Gaps = 14/305 (4%)
 Frame = -2

Query: 1950 ERSTEPPELIHSDVCDLKYVQTCGGNKYFITFIDNSTKFYYVYLLKSKDEALAKFIIYKN 1771
            ER+  P EL+HSD+C++  V T GG +YF+T ID++T+F YVYLLK+KDEAL  F IYK 
Sbjct: 484  ERNLAPLELLHSDLCEMNGVLTKGGKRYFMTLIDDATRFCYVYLLKTKDEALDYFKIYKA 543

Query: 1770 EVENQLGKKIKRLRSDRGGEYEAPIGD-FCVQHGIVHEVTTPYSPQSNGVAERKNCTLRE 1594
            EVENQL +KIKRLRSDRGGE+ +   D FC +HGI+HE T PYSP+SNG+AERKN TL +
Sbjct: 544  EVENQLDRKIKRLRSDRGGEFFSNEFDLFCEEHGIIHERTPPYSPESNGIAERKNRTLTD 603

Query: 1593 MMNAMLISSGLPSNMWGEAILSNNYILNRIPRKKQDKTPYELWSGKKPSYKYL*VWESLA 1414
            ++NAML ++GLP   WGEA+L++N++LNR+P + +DKTPYE+W G+KPS  YL  W  LA
Sbjct: 604  LVNAMLDTAGLPKAWWGEALLTSNHVLNRVPNRNKDKTPYEIWIGRKPSLSYLRTWGCLA 663

Query: 1413 KVAVLVPKVIKIGLETMDCIFIEYPHNSTAYRFLVHDSKIPDIHKNTVIESRNASFLENV 1234
            KV V + K  K+G +T+DC+F+ Y H+S AYRFL+  S++PD+H  T++ESR+A+F E+ 
Sbjct: 664  KVNVPITKKRKLGPKTVDCVFLGYAHHSIAYRFLIVKSEVPDMHVGTIMESRDATFFESF 723

Query: 1233 FPCK-SMSGSSSLKRV----------NEEVQDPTKVQEVE--LRRSIQPKIAKTFGDDFE 1093
            FP K + SGS+    +           E   +    ++V    RRS + + AK+FGDDF 
Sbjct: 724  FPMKDTHSGSNQPSEIIPSSITPPEQTEHTHELVSEEDVSEAPRRSKRQRTAKSFGDDFT 783

Query: 1092 TYLLE 1078
             YL++
Sbjct: 784  VYLVD 788



 Score =  270 bits (691), Expect(2) = e-157
 Identities = 155/361 (42%), Positives = 221/361 (61%), Gaps = 5/361 (1%)
 Frame = -3

Query: 1070 PLTYDEAVNSSERHLWKESIKSEVDSIMQNYT*ELVDLPPRCKTLGSKWIFKRKMKPDGS 891
            P +  EA  S +   WKE+++SE+DSI+ N T E+ + P  CK +G KW+FK+K++PDG+
Sbjct: 791  PKSISEAYASPDADYWKEAVRSEMDSIIANGTWEVTERPYGCKPVGCKWVFKKKLRPDGT 850

Query: 890  IDKYKTRLVIKGYR*KEGLDYFDIYSPVTGINSIKMIHAIASLRNLNVKWMLKQLS*MGN 711
            I+KYK RLV KGY  KEG D+FD YSPV  + +I+++ ++A+   L V  M  + + +  
Sbjct: 851  IEKYKARLVAKGYTQKEGEDFFDTYSPVARLTTIRVLLSLAASHGLLVHQMDVKTAFLNG 910

Query: 710  *MKKFIWSNLR---VLDLQVRK--RKFVSWLNHCMV*NKRRKSGMRSLTTQ*FLVDLRFN 546
             + + I+ +     V++ Q  K  +   S         +  +   ++LT+  F V    N
Sbjct: 911  ELDEEIYMDQPDGFVVEGQEGKVCKLLKSLYGLKQAPKQWHEKFDKTLTSAGFAV----N 966

Query: 545  ECDKCVYIKEMENEYVILCLYVDDILIVGSNDKIVKSTKNMLNSKFDMKDMRLADVILGI 366
            E DKCVY +    E VILCLYVDDILI G+N +++   K+ L+  FDMKD+ +ADVIL I
Sbjct: 967  EADKCVYYRHGGGEGVILCLYVDDILIFGTNLEVINEVKSFLSQNFDMKDLGVADVILNI 1026

Query: 365  KIIRTTDGLVLNQTHYIDKILENFNKNDSGIARTSLDTSLHLSKNRGEDVSQVEYARIIG 186
            K+IR  +G+ L Q+HY++KIL  F   DS  + T  D SL L KN+    +Q+EY++IIG
Sbjct: 1027 KLIRGENGITLLQSHYVEKILNRFGYIDSKPSPTPYDPSLLLRKNKRIARNQLEYSQIIG 1086

Query: 185  SLMYLMSYTRPDMAYVVSKLSGYTSNPSAEHWTAXXXXXXXXXXXXXXXLHYTRYPTVLE 6
            SLMYL S TRPD+++ VSKLS +TSNP  +HW A               LHYT YP VLE
Sbjct: 1087 SLMYLASATRPDISFAVSKLSRFTSNPGDDHWRALERVMRYLKGTVELGLHYTGYPAVLE 1146

Query: 5    G 3
            G
Sbjct: 1147 G 1147


>gb|AAT77367.1| putative polyprotein [Oryza sativa Japonica Group]
            gi|51854387|gb|AAU10767.1| hypothetical protein [Oryza
            sativa Japonica Group]
          Length = 1320

 Score =  315 bits (806), Expect(2) = e-157
 Identities = 158/305 (51%), Positives = 218/305 (71%), Gaps = 14/305 (4%)
 Frame = -2

Query: 1950 ERSTEPPELIHSDVCDLKYVQTCGGNKYFITFIDNSTKFYYVYLLKSKDEALAKFIIYKN 1771
            ER+  P EL+HSD+C++  V T GG +YF+T ID++T+F YVYLLK+KDEAL  F IYK 
Sbjct: 484  ERNLAPLELLHSDLCEMNGVLTKGGKRYFMTLIDDATRFCYVYLLKTKDEALDYFKIYKA 543

Query: 1770 EVENQLGKKIKRLRSDRGGEYEAPIGD-FCVQHGIVHEVTTPYSPQSNGVAERKNCTLRE 1594
            EVENQL +KIKRLRSDRGGE+ +   D FC +HGI+HE T PYSP+SNG+AERKN TL +
Sbjct: 544  EVENQLDRKIKRLRSDRGGEFFSNEFDLFCEEHGIIHERTPPYSPESNGIAERKNRTLTD 603

Query: 1593 MMNAMLISSGLPSNMWGEAILSNNYILNRIPRKKQDKTPYELWSGKKPSYKYL*VWESLA 1414
            ++NAML ++GLP   WGEA+L++N++LNR+P + +DKTPYE+W G+KPS  YL  W  LA
Sbjct: 604  LVNAMLDTAGLPKAWWGEALLTSNHVLNRVPNRNKDKTPYEIWIGRKPSLSYLRTWGCLA 663

Query: 1413 KVAVLVPKVIKIGLETMDCIFIEYPHNSTAYRFLVHDSKIPDIHKNTVIESRNASFLENV 1234
            KV V + K  K+G +T+DC+F+ Y H+S AYRFL+  S++PD+H  T++ESR+A+F E+ 
Sbjct: 664  KVNVPITKKRKLGPKTVDCVFLGYAHHSIAYRFLIVKSEVPDMHVGTIMESRDATFFESF 723

Query: 1233 FPCK-SMSGSSSLKRV----------NEEVQDPTKVQEVE--LRRSIQPKIAKTFGDDFE 1093
            FP K + SGS+    +           E   +    ++V    RRS + + AK+FGDDF 
Sbjct: 724  FPMKDTHSGSNQPSEIIPSSITPPEQTEHTHELVSEEDVSEAPRRSKRQRTAKSFGDDFT 783

Query: 1092 TYLLE 1078
             YL++
Sbjct: 784  VYLVD 788



 Score =  270 bits (691), Expect(2) = e-157
 Identities = 155/361 (42%), Positives = 221/361 (61%), Gaps = 5/361 (1%)
 Frame = -3

Query: 1070 PLTYDEAVNSSERHLWKESIKSEVDSIMQNYT*ELVDLPPRCKTLGSKWIFKRKMKPDGS 891
            P +  EA  S +   WKE+++SE+DSI+ N T E+ + P  CK +G KW+FK+K++PDG+
Sbjct: 791  PKSISEAYASPDADYWKEAVRSEMDSIIANGTWEVTERPYGCKPVGCKWVFKKKLRPDGT 850

Query: 890  IDKYKTRLVIKGYR*KEGLDYFDIYSPVTGINSIKMIHAIASLRNLNVKWMLKQLS*MGN 711
            I+KYK RLV KGY  KEG D+FD YSPV  + +I+++ ++A+   L V  M  + + +  
Sbjct: 851  IEKYKARLVAKGYTQKEGEDFFDTYSPVARLTTIRVLLSLAASHGLLVHQMDVKTAFLNG 910

Query: 710  *MKKFIWSNLR---VLDLQVRK--RKFVSWLNHCMV*NKRRKSGMRSLTTQ*FLVDLRFN 546
             + + I+ +     V++ Q  K  +   S         +  +   ++LT+  F V    N
Sbjct: 911  ELDEEIYMDQPDGFVVEGQEGKVCKLLKSLYGLKQAPKQWHEKFDKTLTSAGFAV----N 966

Query: 545  ECDKCVYIKEMENEYVILCLYVDDILIVGSNDKIVKSTKNMLNSKFDMKDMRLADVILGI 366
            E DKCVY +    E VILCLYVDDILI G+N +++   K+ L+  FDMKD+ +ADVIL I
Sbjct: 967  EADKCVYYRHGGGEGVILCLYVDDILIFGTNLEVINEVKSFLSQNFDMKDLGVADVILNI 1026

Query: 365  KIIRTTDGLVLNQTHYIDKILENFNKNDSGIARTSLDTSLHLSKNRGEDVSQVEYARIIG 186
            K+IR  +G+ L Q+HY++KIL  F   DS  + T  D SL L KN+    +Q+EY++IIG
Sbjct: 1027 KLIRGENGITLLQSHYVEKILNRFGYIDSKPSPTPYDPSLLLRKNKRIARNQLEYSQIIG 1086

Query: 185  SLMYLMSYTRPDMAYVVSKLSGYTSNPSAEHWTAXXXXXXXXXXXXXXXLHYTRYPTVLE 6
            SLMYL S TRPD+++ VSKLS +TSNP  +HW A               LHYT YP VLE
Sbjct: 1087 SLMYLASATRPDISFAVSKLSRFTSNPGDDHWRALERVMRYLKGTMELGLHYTGYPAVLE 1146

Query: 5    G 3
            G
Sbjct: 1147 G 1147


>emb|CAD40198.2| OSJNBb0043H09.7 [Oryza sativa Japonica Group]
          Length = 1302

 Score =  315 bits (807), Expect(2) = e-157
 Identities = 158/305 (51%), Positives = 220/305 (72%), Gaps = 14/305 (4%)
 Frame = -2

Query: 1950 ERSTEPPELIHSDVCDLKYVQTCGGNKYFITFIDNSTKFYYVYLLKSKDEALAKFIIYKN 1771
            ER+  P EL+HSD+C++  V T GG +YF+T ID++T+F YVYLLK+KDEAL  F IYK 
Sbjct: 484  ERNLAPLELLHSDLCEMNGVLTKGGKRYFMTLIDDATRFCYVYLLKTKDEALDYFKIYKA 543

Query: 1770 EVENQLGKKIKRLRSDRGGEYEAPIGD-FCVQHGIVHEVTTPYSPQSNGVAERKNCTLRE 1594
            E+ENQL +KIKRLRSDRGGE+ +   D FC +HGI+HE T PYSP+SNG+AERKN TL +
Sbjct: 544  EIENQLDRKIKRLRSDRGGEFFSNEFDLFCEEHGIIHERTPPYSPESNGIAERKNRTLTD 603

Query: 1593 MMNAMLISSGLPSNMWGEAILSNNYILNRIPRKKQDKTPYELWSGKKPSYKYL*VWESLA 1414
            ++NAML ++GLP   WGEA+L++N++LNR+P + +DKTPYE+W G+KPS  YL  W  LA
Sbjct: 604  LVNAMLDTAGLPKAWWGEALLTSNHVLNRVPNRNKDKTPYEIWIGRKPSLSYLRTWGCLA 663

Query: 1413 KVAVLVPKVIKIGLETMDCIFIEYPHNSTAYRFLVHDSKIPDIHKNTVIESRNASFLENV 1234
            KV V + K  K+G +T+DC+F+ Y H+S AYRFL+  S++PD+H  T++ESR+A+F E+ 
Sbjct: 664  KVNVPITKKRKLGPKTVDCVFLGYAHHSIAYRFLIVKSEVPDMHVGTIMESRDATFFESF 723

Query: 1233 FPCK-SMSGSSSLKRVNEEVQDPTK--------VQEVEL----RRSIQPKIAKTFGDDFE 1093
            FP K + SGS+    +      P++        V E ++    RRS + + AK+FGDDF 
Sbjct: 724  FPMKDTHSGSNQPSEIIPSSITPSEQTEHTHELVSEEDVSEAPRRSKRQRTAKSFGDDFT 783

Query: 1092 TYLLE 1078
             YL++
Sbjct: 784  VYLVD 788



 Score =  268 bits (685), Expect(2) = e-157
 Identities = 150/357 (42%), Positives = 211/357 (59%), Gaps = 1/357 (0%)
 Frame = -3

Query: 1070 PLTYDEAVNSSERHLWKESIKSEVDSIMQNYT*ELVDLPPRCKTLGSKWIFKRKMKPDGS 891
            P +  EA  S +   WKE+I SE+DSI+ N T E+ + P  CK +G KW+FK+K++PDG+
Sbjct: 791  PKSISEAYASPDADYWKEAICSEMDSIIANGTWEVTERPYGCKPVGCKWVFKKKLRPDGT 850

Query: 890  IDKYKTRLVIKGYR*KEGLDYFDIYSPVTGINSIKMIHAIASLRNLNVKWMLKQLS*MGN 711
            I+KYK RLV KGY  KEG D+FD YSPV  + +I+++ ++A+   L V  M  + + +  
Sbjct: 851  IEKYKARLVAKGYTQKEGEDFFDTYSPVARLTTIRVLLSLAASHGLLVHQMDVKTAFLNG 910

Query: 710  *MKKFIWSNLRV-LDLQVRKRKFVSWLNHCMV*NKRRKSGMRSLTTQ*FLVDLRFNECDK 534
             + + I+ +      ++ ++ K    L       +  K                 NE DK
Sbjct: 911  ELDEEIYMDQPDGFVVEGQEGKVCKLLKSLYGLKQAPKQWHEKFDKTLISAGFAVNEADK 970

Query: 533  CVYIKEMENEYVILCLYVDDILIVGSNDKIVKSTKNMLNSKFDMKDMRLADVILGIKIIR 354
            CVY +    E VILCLYVDDILI G+N +++   K+ L+  FDMKD+ +ADVIL IK+IR
Sbjct: 971  CVYYRHGGGEGVILCLYVDDILIFGTNLEVINEVKSFLSQNFDMKDLGVADVILNIKLIR 1030

Query: 353  TTDGLVLNQTHYIDKILENFNKNDSGIARTSLDTSLHLSKNRGEDVSQVEYARIIGSLMY 174
              +G+ L Q+HY++KIL  F   DS  + T  D SL L KN+    +Q+EY++IIGSLMY
Sbjct: 1031 GENGITLLQSHYVEKILNRFGYIDSKPSPTPYDPSLLLRKNKRIARNQLEYSQIIGSLMY 1090

Query: 173  LMSYTRPDMAYVVSKLSGYTSNPSAEHWTAXXXXXXXXXXXXXXXLHYTRYPTVLEG 3
            L S TRPD+++ VSKLS +TSNP  +HW A                HYT YP VLEG
Sbjct: 1091 LASATRPDISFAVSKLSRFTSNPGDDHWRALERVMRYLKGTVELGFHYTGYPAVLEG 1147


>emb|CAE01299.2| OSJNBa0020P07.16 [Oryza sativa Japonica Group]
          Length = 1314

 Score =  313 bits (803), Expect(2) = e-157
 Identities = 157/305 (51%), Positives = 216/305 (70%), Gaps = 14/305 (4%)
 Frame = -2

Query: 1950 ERSTEPPELIHSDVCDLKYVQTCGGNKYFITFIDNSTKFYYVYLLKSKDEALAKFIIYKN 1771
            ER+  P EL+HSD+C++  V T GG +YF+TFID++T+F YVYLLK KDEAL  F IYK 
Sbjct: 456  ERNLAPLELLHSDLCEMNGVLTKGGKRYFMTFIDDATRFCYVYLLKKKDEALDYFKIYKA 515

Query: 1770 EVENQLGKKIKRLRSDRGGEYEAPIGD-FCVQHGIVHEVTTPYSPQSNGVAERKNCTLRE 1594
            EVENQL +KIKRLRSDRGGE+ +   D FC +HGI+HE T PYSP+SNG+AERKNCTL +
Sbjct: 516  EVENQLDRKIKRLRSDRGGEFFSNEFDLFCEEHGIIHERTPPYSPESNGIAERKNCTLTD 575

Query: 1593 MMNAMLISSGLPSNMWGEAILSNNYILNRIPRKKQDKTPYELWSGKKPSYKYL*VWESLA 1414
            ++NAML ++GLP   WGE +L++N++LNR+P + +DKTPYE+W G+KPS  YL  W  LA
Sbjct: 576  LVNAMLDTAGLPKAWWGEVLLTSNHVLNRVPNRNKDKTPYEIWIGRKPSLSYLRTWGCLA 635

Query: 1413 KVAVLVPKVIKIGLETMDCIFIEYPHNSTAYRFLVHDSKIPDIHKNTVIESRNASFLENV 1234
            KV V + K  K+G +T+DC+F+ Y H+S AYRFL+  S++ D+H   ++ESR+A+F E+ 
Sbjct: 636  KVNVPITKKRKLGPKTVDCVFLGYAHHSIAYRFLIVKSEVLDMHVGIIMESRDATFFESF 695

Query: 1233 FPCK-SMSGSSSLKRV----------NEEVQDPTKVQEVE--LRRSIQPKIAKTFGDDFE 1093
            FP K + SGS+    +           E   +    ++V    RRS + + AK+FGDDF 
Sbjct: 696  FPMKDTHSGSNQPSEIIPSSIIPPEQTEHTHELVSEEDVSEAPRRSKRQRTAKSFGDDFT 755

Query: 1092 TYLLE 1078
             YL++
Sbjct: 756  VYLVD 760



 Score =  269 bits (688), Expect(2) = e-157
 Identities = 155/361 (42%), Positives = 221/361 (61%), Gaps = 5/361 (1%)
 Frame = -3

Query: 1070 PLTYDEAVNSSERHLWKESIKSEVDSIMQNYT*ELVDLPPRCKTLGSKWIFKRKMKPDGS 891
            P +  EA  S +   WKE+++SE+DSI+ N T E+ + P  CK +G KW+FK+K++PDG+
Sbjct: 763  PKSISEAYASPDADYWKEAVRSEMDSIIANGTWEVTEQPYGCKPVGCKWVFKKKLRPDGT 822

Query: 890  IDKYKTRLVIKGYR*KEGLDYFDIYSPVTGINSIKMIHAIASLRNLNVKWMLKQLS*MGN 711
            I+KYK RLV KGY  KEG D+FD YSPV  + +I+++ ++A+   L V  M  + + +  
Sbjct: 823  IEKYKARLVAKGYTQKEGEDFFDTYSPVARLTTIRVLLSLAASHGLLVHQMDVKTAFLNG 882

Query: 710  *MKKFIWSNLR---VLDLQVRK--RKFVSWLNHCMV*NKRRKSGMRSLTTQ*FLVDLRFN 546
             + + I+ +     V++ Q  K  +   S         +  +   ++LT+  F V    N
Sbjct: 883  ELDEEIYMDQPDGFVVEGQEGKVCKLLKSLYGLKQAPKQWHEKFDKTLTSAGFGV----N 938

Query: 545  ECDKCVYIKEMENEYVILCLYVDDILIVGSNDKIVKSTKNMLNSKFDMKDMRLADVILGI 366
            E DKCVY +    E VILCLYVDDILI G+N +++   K+ L+  FDMKD+ +ADVIL I
Sbjct: 939  EADKCVYYRHGGGEGVILCLYVDDILIFGTNLEVINEVKSFLSQNFDMKDLGVADVILNI 998

Query: 365  KIIRTTDGLVLNQTHYIDKILENFNKNDSGIARTSLDTSLHLSKNRGEDVSQVEYARIIG 186
            K+IR  +G+ L Q+HY++KIL  F   DS  + T  D SL L KN+    +Q+EY++IIG
Sbjct: 999  KLIRGENGITLLQSHYVEKILNRFGYIDSKPSPTPYDPSLLLRKNKRIARNQLEYSQIIG 1058

Query: 185  SLMYLMSYTRPDMAYVVSKLSGYTSNPSAEHWTAXXXXXXXXXXXXXXXLHYTRYPTVLE 6
            SLMYL S TRPD+++ VSKLS +TSNP  +HW A               LHYT YP VLE
Sbjct: 1059 SLMYLASATRPDISFAVSKLSRFTSNPGDDHWRALERVMRYLKGTVELGLHYTGYPAVLE 1118

Query: 5    G 3
            G
Sbjct: 1119 G 1119


>gb|ABF96953.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1197

 Score =  312 bits (799), Expect(2) = e-156
 Identities = 156/305 (51%), Positives = 218/305 (71%), Gaps = 14/305 (4%)
 Frame = -2

Query: 1950 ERSTEPPELIHSDVCDLKYVQTCGGNKYFITFIDNSTKFYYVYLLKSKDEALAKFIIYKN 1771
            ER+  P EL+HSD+C++  V T GG +YF+T ID++T+F YVYLLK+KDEAL  F IYK 
Sbjct: 379  ERNLAPLELLHSDLCEMNGVLTKGGKRYFMTLIDDATRFCYVYLLKTKDEALDYFKIYKA 438

Query: 1770 EVENQLGKKIKRLRSDRGGEYEAPIGD-FCVQHGIVHEVTTPYSPQSNGVAERKNCTLRE 1594
            EVENQL +KIKRLRSDRGGE+ +   D FC +HGI+HE + PYSP+SNG+AERKN TL +
Sbjct: 439  EVENQLDRKIKRLRSDRGGEFFSNEFDLFCEEHGIIHERSPPYSPESNGIAERKNRTLTD 498

Query: 1593 MMNAMLISSGLPSNMWGEAILSNNYILNRIPRKKQDKTPYELWSGKKPSYKYL*VWESLA 1414
            ++NAML ++GLP   WGEA+L++N++LNR+P + +DKTPYE+W G+KPS  YL  W  LA
Sbjct: 499  LVNAMLDTAGLPKAWWGEALLTSNHVLNRVPNRNKDKTPYEIWIGRKPSLSYLRTWGCLA 558

Query: 1413 KVAVLVPKVIKIGLETMDCIFIEYPHNSTAYRFLVHDSKIPDIHKNTVIESRNASFLENV 1234
            KV V + K  K+G +T+DC+F+ Y H+S AYRFL+  S++PD+H  T++ESR+A+F E+ 
Sbjct: 559  KVNVPITKKRKLGPKTVDCVFLGYAHHSIAYRFLIVKSEVPDMHVGTIMESRDATFFESF 618

Query: 1233 FPCK-SMSGSSSLKRV----------NEEVQDPTKVQEVE--LRRSIQPKIAKTFGDDFE 1093
            FP K + SGS+    +           E   +    ++V    R+S + + AK+FGDDF 
Sbjct: 619  FPMKDTHSGSNQPSEIIPSSITPPEQTEHTHELVSEEDVSEAPRKSKRQRTAKSFGDDFT 678

Query: 1092 TYLLE 1078
             YL++
Sbjct: 679  VYLVD 683



 Score =  270 bits (691), Expect(2) = e-156
 Identities = 151/357 (42%), Positives = 214/357 (59%), Gaps = 1/357 (0%)
 Frame = -3

Query: 1070 PLTYDEAVNSSERHLWKESIKSEVDSIMQNYT*ELVDLPPRCKTLGSKWIFKRKMKPDGS 891
            P +  EA  S +   WKE+++SE+DSI+ N T E+ + P  CK +G KW+FK+K++PDG+
Sbjct: 686  PKSISEAYASPDADYWKEAVRSEMDSIIANGTWEVTERPYGCKPVGCKWVFKKKLRPDGT 745

Query: 890  IDKYKTRLVIKGYR*KEGLDYFDIYSPVTGINSIKMIHAIASLRNLNVKWMLKQLS*MGN 711
            I+KYK RLV KGY  KEG D+FD YSPV  + +I+++ ++A+   L V  M  + + +  
Sbjct: 746  IEKYKARLVAKGYTQKEGEDFFDTYSPVARLTTIRVLLSLAASHGLLVHQMDVKTAFLNG 805

Query: 710  *MKKFIWSNLRV-LDLQVRKRKFVSWLNHCMV*NKRRKSGMRSLTTQ*FLVDLRFNECDK 534
             + + I+ +      ++ ++ K    L       +  K                 NE DK
Sbjct: 806  ELDEEIYMDQPDGFVVEGQEGKVCKLLKSLYGLKQAPKQWHEKFDKTFTSAGFAVNEADK 865

Query: 533  CVYIKEMENEYVILCLYVDDILIVGSNDKIVKSTKNMLNSKFDMKDMRLADVILGIKIIR 354
            CVY +    E VILCLYVDDILI G+N +++   K+ L+  FDMKD+ +ADVIL IK+IR
Sbjct: 866  CVYYRHGGGEGVILCLYVDDILIFGTNLEVINEVKSFLSQNFDMKDLGVADVILNIKLIR 925

Query: 353  TTDGLVLNQTHYIDKILENFNKNDSGIARTSLDTSLHLSKNRGEDVSQVEYARIIGSLMY 174
              +G+ L Q+HY++KIL  F   DS  + T  D SL L KN+    +Q+EY++IIGSLMY
Sbjct: 926  GENGITLLQSHYVEKILNRFGYIDSKPSPTPYDPSLLLRKNKRIAGNQLEYSQIIGSLMY 985

Query: 173  LMSYTRPDMAYVVSKLSGYTSNPSAEHWTAXXXXXXXXXXXXXXXLHYTRYPTVLEG 3
            L S TRPD+++VVSKLS +TSNP  +HW A               LHYT YP VLEG
Sbjct: 986  LASATRPDISFVVSKLSRFTSNPGDDHWRALERVMCYLKGTVELGLHYTGYPAVLEG 1042


>gb|AAS01934.1| putative Integrase core domain containing protein [Oryza sativa
            Japonica Group]
          Length = 1180

 Score =  312 bits (799), Expect(2) = e-156
 Identities = 156/305 (51%), Positives = 218/305 (71%), Gaps = 14/305 (4%)
 Frame = -2

Query: 1950 ERSTEPPELIHSDVCDLKYVQTCGGNKYFITFIDNSTKFYYVYLLKSKDEALAKFIIYKN 1771
            ER+  P EL+HSD+C++  V T GG +YF+T ID++T+F YVYLLK+KDEAL  F IYK 
Sbjct: 362  ERNLAPLELLHSDLCEMNGVLTKGGKRYFMTLIDDATRFCYVYLLKTKDEALDYFKIYKA 421

Query: 1770 EVENQLGKKIKRLRSDRGGEYEAPIGD-FCVQHGIVHEVTTPYSPQSNGVAERKNCTLRE 1594
            EVENQL +KIKRLRSDRGGE+ +   D FC +HGI+HE + PYSP+SNG+AERKN TL +
Sbjct: 422  EVENQLDRKIKRLRSDRGGEFFSNEFDLFCEEHGIIHERSPPYSPESNGIAERKNRTLTD 481

Query: 1593 MMNAMLISSGLPSNMWGEAILSNNYILNRIPRKKQDKTPYELWSGKKPSYKYL*VWESLA 1414
            ++NAML ++GLP   WGEA+L++N++LNR+P + +DKTPYE+W G+KPS  YL  W  LA
Sbjct: 482  LVNAMLDTAGLPKAWWGEALLTSNHVLNRVPNRNKDKTPYEIWIGRKPSLSYLRTWGCLA 541

Query: 1413 KVAVLVPKVIKIGLETMDCIFIEYPHNSTAYRFLVHDSKIPDIHKNTVIESRNASFLENV 1234
            KV V + K  K+G +T+DC+F+ Y H+S AYRFL+  S++PD+H  T++ESR+A+F E+ 
Sbjct: 542  KVNVPITKKRKLGPKTVDCVFLGYAHHSIAYRFLIVKSEVPDMHVGTIMESRDATFFESF 601

Query: 1233 FPCK-SMSGSSSLKRV----------NEEVQDPTKVQEVE--LRRSIQPKIAKTFGDDFE 1093
            FP K + SGS+    +           E   +    ++V    R+S + + AK+FGDDF 
Sbjct: 602  FPMKDTHSGSNQPSEIIPSSITPPEQTEHTHELVSEEDVSEAPRKSKRQRTAKSFGDDFT 661

Query: 1092 TYLLE 1078
             YL++
Sbjct: 662  VYLVD 666



 Score =  270 bits (691), Expect(2) = e-156
 Identities = 151/357 (42%), Positives = 214/357 (59%), Gaps = 1/357 (0%)
 Frame = -3

Query: 1070 PLTYDEAVNSSERHLWKESIKSEVDSIMQNYT*ELVDLPPRCKTLGSKWIFKRKMKPDGS 891
            P +  EA  S +   WKE+++SE+DSI+ N T E+ + P  CK +G KW+FK+K++PDG+
Sbjct: 669  PKSISEAYASPDADYWKEAVRSEMDSIIANGTWEVTERPYGCKPVGCKWVFKKKLRPDGT 728

Query: 890  IDKYKTRLVIKGYR*KEGLDYFDIYSPVTGINSIKMIHAIASLRNLNVKWMLKQLS*MGN 711
            I+KYK RLV KGY  KEG D+FD YSPV  + +I+++ ++A+   L V  M  + + +  
Sbjct: 729  IEKYKARLVAKGYTQKEGEDFFDTYSPVARLTTIRVLLSLAASHGLLVHQMDVKTAFLNG 788

Query: 710  *MKKFIWSNLRV-LDLQVRKRKFVSWLNHCMV*NKRRKSGMRSLTTQ*FLVDLRFNECDK 534
             + + I+ +      ++ ++ K    L       +  K                 NE DK
Sbjct: 789  ELDEEIYMDQPDGFVVEGQEGKVCKLLKSLYGLKQAPKQWHEKFDKTFTSAGFAVNEADK 848

Query: 533  CVYIKEMENEYVILCLYVDDILIVGSNDKIVKSTKNMLNSKFDMKDMRLADVILGIKIIR 354
            CVY +    E VILCLYVDDILI G+N +++   K+ L+  FDMKD+ +ADVIL IK+IR
Sbjct: 849  CVYYRHGGGEGVILCLYVDDILIFGTNLEVINEVKSFLSQNFDMKDLGVADVILNIKLIR 908

Query: 353  TTDGLVLNQTHYIDKILENFNKNDSGIARTSLDTSLHLSKNRGEDVSQVEYARIIGSLMY 174
              +G+ L Q+HY++KIL  F   DS  + T  D SL L KN+    +Q+EY++IIGSLMY
Sbjct: 909  GENGITLLQSHYVEKILNRFGYIDSKPSPTPYDPSLLLRKNKRIAGNQLEYSQIIGSLMY 968

Query: 173  LMSYTRPDMAYVVSKLSGYTSNPSAEHWTAXXXXXXXXXXXXXXXLHYTRYPTVLEG 3
            L S TRPD+++VVSKLS +TSNP  +HW A               LHYT YP VLEG
Sbjct: 969  LASATRPDISFVVSKLSRFTSNPGDDHWRALERVMCYLKGTVELGLHYTGYPAVLEG 1025


>emb|CAE04792.1| OSJNBb0018J12.5 [Oryza sativa Japonica Group]
          Length = 1320

 Score =  315 bits (808), Expect(2) = e-156
 Identities = 159/305 (52%), Positives = 219/305 (71%), Gaps = 14/305 (4%)
 Frame = -2

Query: 1950 ERSTEPPELIHSDVCDLKYVQTCGGNKYFITFIDNSTKFYYVYLLKSKDEALAKFIIYKN 1771
            ER+  P EL+HSD+C++  V T GG +YF+TFID++T+F YVYLLK+KDEAL  F IYK 
Sbjct: 484  ERNLAPLELLHSDLCEMNGVLTKGGKRYFMTFIDDATRFCYVYLLKTKDEALDYFKIYKA 543

Query: 1770 EVENQLGKKIKRLRSDRGGEYEAPIGD-FCVQHGIVHEVTTPYSPQSNGVAERKNCTLRE 1594
            EVENQL +KIKRLRSDRGGE+ +   D FC +HGI+HE T PYSP+SNG+AERKN TL +
Sbjct: 544  EVENQLDRKIKRLRSDRGGEFFSNEFDLFCEEHGIIHERTPPYSPESNGIAERKNRTLTD 603

Query: 1593 MMNAMLISSGLPSNMWGEAILSNNYILNRIPRKKQDKTPYELWSGKKPSYKYL*VWESLA 1414
            ++NAML ++GLP   WGEA+L++N++LNR+P + +DKTPYE+W G+KPS  YL +W  LA
Sbjct: 604  LVNAMLDTAGLPKAWWGEALLTSNHVLNRVPNRNKDKTPYEIWIGRKPSLSYLRIWGCLA 663

Query: 1413 KVAVLVPKVIKIGLETMDCIFIEYPHNSTAYRFLVHDSKIPDIHKNTVIESRNASFLENV 1234
            KV V + K  K+G +T+DC+F+ Y H+S AYRFL+  S++ D+H  T+IESR+A+F E+ 
Sbjct: 664  KVNVPITKKRKLGPKTVDCVFLGYAHHSIAYRFLIVKSEVLDMHVGTIIESRDATFFESF 723

Query: 1233 FPCK-SMSGSSSLKRV----------NEEVQDPTKVQEVE--LRRSIQPKIAKTFGDDFE 1093
            FP K + SGS+    +           E   +    ++V    RRS + + AK+FGDDF 
Sbjct: 724  FPMKDTHSGSNQPSEIIPSSITPPEQTEHTHELVSEEDVSEAPRRSKRQRTAKSFGDDFT 783

Query: 1092 TYLLE 1078
             YL++
Sbjct: 784  VYLVD 788



 Score =  266 bits (681), Expect(2) = e-156
 Identities = 149/357 (41%), Positives = 212/357 (59%), Gaps = 1/357 (0%)
 Frame = -3

Query: 1070 PLTYDEAVNSSERHLWKESIKSEVDSIMQNYT*ELVDLPPRCKTLGSKWIFKRKMKPDGS 891
            P +  EA  S +   WKE+++SE+DSI+ N T E+ + P  CK +G KW+FK+K++PDG+
Sbjct: 791  PKSISEAYASPDADYWKEAVRSEMDSIIANGTWEVTERPYGCKPVGCKWVFKKKLRPDGT 850

Query: 890  IDKYKTRLVIKGYR*KEGLDYFDIYSPVTGINSIKMIHAIASLRNLNVKWMLKQLS*MGN 711
            I+KYK RLV KGY  KEG D+FD YSPV  + +I+++ ++A+   L V  M  + + +  
Sbjct: 851  IEKYKARLVAKGYTQKEGEDFFDTYSPVARLTTIRVLLSLAASHGLLVHQMDVKTAFLNG 910

Query: 710  *MKKFIWSNLRV-LDLQVRKRKFVSWLNHCMV*NKRRKSGMRSLTTQ*FLVDLRFNECDK 534
             + + I+ +      ++ ++ K    L       +  K                 NE DK
Sbjct: 911  ELDEEIYMDQPDGFVVEGQEGKVCKLLKSLYGLKQAPKQWHEKFDKTLISAGFAVNEADK 970

Query: 533  CVYIKEMENEYVILCLYVDDILIVGSNDKIVKSTKNMLNSKFDMKDMRLADVILGIKIIR 354
            CVY +    E VILCLYVDDILI G+N +++   K+ L+  FDMKD+ +ADVIL IK+IR
Sbjct: 971  CVYYRHGGGEGVILCLYVDDILIFGTNLEVINEVKSFLSKNFDMKDLGVADVILNIKLIR 1030

Query: 353  TTDGLVLNQTHYIDKILENFNKNDSGIARTSLDTSLHLSKNRGEDVSQVEYARIIGSLMY 174
              + + L Q+HY++KIL  F   DS  + T  D SL L KN+    +Q+EY++IIGSLMY
Sbjct: 1031 GENEITLLQSHYVEKILNRFGYIDSKPSPTPYDPSLLLRKNKRIARNQLEYSQIIGSLMY 1090

Query: 173  LMSYTRPDMAYVVSKLSGYTSNPSAEHWTAXXXXXXXXXXXXXXXLHYTRYPTVLEG 3
            L S TRPD+++ VSKLS +TSNP  +HW A               LHYT YP VLEG
Sbjct: 1091 LASATRPDISFAVSKLSRFTSNPGDDHWRALERVMRYLKGTVELGLHYTGYPAVLEG 1147


>gb|AAX96223.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
            Japonica Group] gi|77549882|gb|ABA92679.1|
            retrotransposon protein, putative, Ty1-copia subclass
            [Oryza sativa Japonica Group]
          Length = 1302

 Score =  311 bits (797), Expect(2) = e-156
 Identities = 156/305 (51%), Positives = 216/305 (70%), Gaps = 14/305 (4%)
 Frame = -2

Query: 1950 ERSTEPPELIHSDVCDLKYVQTCGGNKYFITFIDNSTKFYYVYLLKSKDEALAKFIIYKN 1771
            ER+  P EL+HSD+C++  V T G  +YF+T ID++T+F YVYLLK+KDEAL  F IYK 
Sbjct: 484  ERNLAPLELLHSDLCEMNGVLTKGAKRYFMTLIDDATRFCYVYLLKTKDEALDYFKIYKA 543

Query: 1770 EVENQLGKKIKRLRSDRGGEYEAPIGD-FCVQHGIVHEVTTPYSPQSNGVAERKNCTLRE 1594
            EVENQL +KIKRLRSDRGGE+ +   D FC +HGI+HE T PYSP+SNG+AERKN TL +
Sbjct: 544  EVENQLDRKIKRLRSDRGGEFFSNEFDLFCAEHGIIHERTPPYSPESNGIAERKNRTLTD 603

Query: 1593 MMNAMLISSGLPSNMWGEAILSNNYILNRIPRKKQDKTPYELWSGKKPSYKYL*VWESLA 1414
            ++NAML ++GLP   WGEA+L++N++LNR+P + +DKTPYE+W G+KPS  YL  W  L 
Sbjct: 604  LVNAMLDTAGLPKAWWGEALLTSNHVLNRVPNRNKDKTPYEIWIGRKPSLSYLRTWGYLV 663

Query: 1413 KVAVLVPKVIKIGLETMDCIFIEYPHNSTAYRFLVHDSKIPDIHKNTVIESRNASFLENV 1234
            KV V + K  K+G +T+DC+F+ Y H+S AYRFL+  S++PD+H  T++ESR+A+F E+ 
Sbjct: 664  KVNVPITKKRKLGPKTVDCVFLGYAHHSIAYRFLIVKSEVPDMHVGTIMESRDATFFESF 723

Query: 1233 FPCK-SMSGSSSLKRV----------NEEVQDPTKVQEVE--LRRSIQPKIAKTFGDDFE 1093
            FP K + SGS+    +           E   +    ++V    RRS + + AK+FGDDF 
Sbjct: 724  FPMKDTHSGSNQPSEIIPNSITPPEQTEHTHELVSEEDVSEAPRRSKRQRTAKSFGDDFT 783

Query: 1092 TYLLE 1078
             YL++
Sbjct: 784  VYLVD 788



 Score =  271 bits (692), Expect(2) = e-156
 Identities = 152/357 (42%), Positives = 213/357 (59%), Gaps = 1/357 (0%)
 Frame = -3

Query: 1070 PLTYDEAVNSSERHLWKESIKSEVDSIMQNYT*ELVDLPPRCKTLGSKWIFKRKMKPDGS 891
            P +  EA  S +   WKE+++SE+DSI+ N T E+ + P  CK +G KW+FK+K++PDG+
Sbjct: 791  PKSISEAYASPDADYWKEALRSEMDSIIANGTWEVTERPYGCKPVGCKWVFKKKLRPDGT 850

Query: 890  IDKYKTRLVIKGYR*KEGLDYFDIYSPVTGINSIKMIHAIASLRNLNVKWMLKQLS*MGN 711
            I+KYK RLV KGY  KEG D+FD YSPV  + +I+++ ++A+   L V  M  + + +  
Sbjct: 851  IEKYKARLVAKGYTQKEGEDFFDTYSPVARLTTIRVLLSLAASHGLLVHQMDVKTTFLNG 910

Query: 710  *MKKFIWS-NLRVLDLQVRKRKFVSWLNHCMV*NKRRKSGMRSLTTQ*FLVDLRFNECDK 534
             + K I+        ++ ++ K    L       +  K            V    NE DK
Sbjct: 911  ELDKEIYMYQPDGFVVEGQEGKVCKLLKSLYGLKQAPKQWHEKFDKTLTSVGFAVNEADK 970

Query: 533  CVYIKEMENEYVILCLYVDDILIVGSNDKIVKSTKNMLNSKFDMKDMRLADVILGIKIIR 354
            CVY +    E VILCLYVDDILI G+N +++   K+ L+  FDMKD+ +ADVIL IK+IR
Sbjct: 971  CVYYRHGGGEGVILCLYVDDILIFGTNLEVINEVKSFLSQNFDMKDLGVADVILNIKLIR 1030

Query: 353  TTDGLVLNQTHYIDKILENFNKNDSGIARTSLDTSLHLSKNRGEDVSQVEYARIIGSLMY 174
              +G+ L Q+HY++KIL  F   DS  + T  D SL L KN+    +Q+EY++IIGSLMY
Sbjct: 1031 GENGITLLQSHYVEKILNRFGYIDSKPSPTPYDPSLLLRKNKRIARNQLEYSQIIGSLMY 1090

Query: 173  LMSYTRPDMAYVVSKLSGYTSNPSAEHWTAXXXXXXXXXXXXXXXLHYTRYPTVLEG 3
            L S TRPD+++ VSKLS +TSNP  +HW A               LHYT YP VLEG
Sbjct: 1091 LASATRPDISFAVSKLSRFTSNPGDDHWRALERVMRYLKGTVELGLHYTGYPAVLEG 1147


>gb|AAP53927.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1297

 Score =  313 bits (803), Expect(2) = e-156
 Identities = 157/305 (51%), Positives = 218/305 (71%), Gaps = 14/305 (4%)
 Frame = -2

Query: 1950 ERSTEPPELIHSDVCDLKYVQTCGGNKYFITFIDNSTKFYYVYLLKSKDEALAKFIIYKN 1771
            ER+  P EL+HSD+C++  V T GG +YF+T ID++T+F Y+YLLK+KDEAL  F IYK 
Sbjct: 484  ERNLAPLELLHSDLCEMNGVLTKGGKRYFMTLIDDATRFCYMYLLKTKDEALDYFKIYKA 543

Query: 1770 EVENQLGKKIKRLRSDRGGEYEAPIGD-FCVQHGIVHEVTTPYSPQSNGVAERKNCTLRE 1594
            EVENQL +KIKRLRSDRGGE+ +   D FC +HGI+HE T PYSP+SNG+AERKN TL +
Sbjct: 544  EVENQLDRKIKRLRSDRGGEFFSNKFDLFCEEHGIIHERTPPYSPESNGIAERKNRTLTD 603

Query: 1593 MMNAMLISSGLPSNMWGEAILSNNYILNRIPRKKQDKTPYELWSGKKPSYKYL*VWESLA 1414
            ++NAML ++GLP   WGEA+L++N++LNR+P + +DKTPYE+W G+KPS  YL  W  LA
Sbjct: 604  LVNAMLDTAGLPKAWWGEALLTSNHVLNRVPNRNKDKTPYEIWIGRKPSLSYLRTWGCLA 663

Query: 1413 KVAVLVPKVIKIGLETMDCIFIEYPHNSTAYRFLVHDSKIPDIHKNTVIESRNASFLENV 1234
            KV V + K  K+G +T+DC+F+ Y H+S AYRFL+  S++PD+H  T++ESR+A+F E+ 
Sbjct: 664  KVNVPITKKRKLGPKTVDCVFLGYAHHSIAYRFLIVKSEVPDMHVGTIMESRDATFFESF 723

Query: 1233 FPCK-SMSGSSSLKRV----------NEEVQDPTKVQEVE--LRRSIQPKIAKTFGDDFE 1093
            FP K + SGS+    +           E   +    ++V    RRS + + AK+FGDDF 
Sbjct: 724  FPMKDTHSGSNQPSEIIPSSITPPEQTEHTHELVSEEDVSEAPRRSKRQRTAKSFGDDFT 783

Query: 1092 TYLLE 1078
             YL++
Sbjct: 784  VYLVD 788



 Score =  268 bits (686), Expect(2) = e-156
 Identities = 155/361 (42%), Positives = 219/361 (60%), Gaps = 5/361 (1%)
 Frame = -3

Query: 1070 PLTYDEAVNSSERHLWKESIKSEVDSIMQNYT*ELVDLPPRCKTLGSKWIFKRKMKPDGS 891
            P +  EA  S +   WKE+++SE+DSI+ N T E+ + P  CK +G KW+FK+K++PDG+
Sbjct: 791  PKSISEAYASPDADYWKEAVRSEMDSIIANGTWEVTERPYGCKPVGCKWVFKKKLRPDGT 850

Query: 890  IDKYKTRLVIKGYR*KEGLDYFDIYSPVTGINSIKMIHAIASLRNLNVKWMLKQLS*MGN 711
            I+KYK RLV KGY  KEG D+FD YSPV  + +I+++ ++A    L V  M  + + +  
Sbjct: 851  IEKYKARLVAKGYTQKEGEDFFDTYSPVARLTTIRVLLSLAVSHGLLVHQMDVKTAFLNG 910

Query: 710  *MKKFIWSNLR---VLDLQVRK--RKFVSWLNHCMV*NKRRKSGMRSLTTQ*FLVDLRFN 546
             + + I+ +     V++ Q  K  +   S         +  +   + LT+  F V    N
Sbjct: 911  ELDEEIYMDQPDGFVVEGQEGKVCKLLKSLYGLKQAPKQCHEKFDKPLTSAGFAV----N 966

Query: 545  ECDKCVYIKEMENEYVILCLYVDDILIVGSNDKIVKSTKNMLNSKFDMKDMRLADVILGI 366
            E DKCVY +    E VILCLYVDDILI G+N +++   K+ L+  FDMKD+ +ADVIL I
Sbjct: 967  EADKCVYYRHGGGEGVILCLYVDDILIFGTNLEVINEVKSFLSQNFDMKDLGVADVILNI 1026

Query: 365  KIIRTTDGLVLNQTHYIDKILENFNKNDSGIARTSLDTSLHLSKNRGEDVSQVEYARIIG 186
            K+IR  +G+ L Q+HY++KIL  F   DS  + T  D SL L KN+    +Q+EY++IIG
Sbjct: 1027 KLIRGENGITLLQSHYVEKILNRFGYIDSKPSPTPYDPSLLLHKNKRIARNQLEYSQIIG 1086

Query: 185  SLMYLMSYTRPDMAYVVSKLSGYTSNPSAEHWTAXXXXXXXXXXXXXXXLHYTRYPTVLE 6
            SLMYL S TRPD+++ VSKLS +TSNP  +HW A               LHYT YP VLE
Sbjct: 1087 SLMYLASATRPDISFAVSKLSRFTSNPGDDHWRALERVMRYLKGTVELGLHYTGYPAVLE 1146

Query: 5    G 3
            G
Sbjct: 1147 G 1147