BLASTX nr result
ID: Catharanthus22_contig00030329
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Catharanthus22_contig00030329
(266 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AGJ83729.1| gag-pol polyprotein, partial [Caragana korshinskii] 63 5e-08
gb|AAD24600.1| putative retroelement pol polyprotein [Arabidopsi... 62 6e-08
gb|EOY00074.1| Cysteine-rich RLK (RECEPTOR-like protein kinase) ... 62 8e-08
dbj|BAB10743.1| retroelement pol polyprotein-like [Arabidopsis t... 60 2e-07
emb|CAA18107.1| LTR retrotransposon like protein [Arabidopsis th... 60 2e-07
gb|AAG50751.1|AC079733_19 polyprotein, putative [Arabidopsis tha... 60 2e-07
emb|CAN60829.1| hypothetical protein VITISV_012059 [Vitis vinifera] 59 7e-07
gb|ACB45089.1| putative polyprotein [Solanum habrochaites] 57 3e-06
dbj|BAB10837.1| retroelement pol polyprotein-like [Arabidopsis t... 57 3e-06
gb|AAG09097.1|AC009323_8 Putative retroelement polyprotein [Arab... 56 4e-06
gb|ACB45081.1| putative polyprotein [Solanum habrochaites] 56 6e-06
emb|CAN65820.1| hypothetical protein VITISV_042324 [Vitis vinifera] 56 6e-06
ref|XP_004310176.1| PREDICTED: uncharacterized protein LOC101315... 55 7e-06
gb|AAG51258.1|AC025782_3 Ty1/copia-element polyprotein [Arabidop... 55 7e-06
gb|AAD25646.1| putative retroelement pol polyprotein [Arabidopsi... 55 7e-06
emb|CAN64502.1| hypothetical protein VITISV_020342 [Vitis vinifera] 55 1e-05
>gb|AGJ83729.1| gag-pol polyprotein, partial [Caragana korshinskii]
Length = 732
Score = 62.8 bits (151), Expect = 5e-08
Identities = 38/87 (43%), Positives = 46/87 (52%)
Frame = +3
Query: 6 TWILT*LPPGKRALDNK*VYRIK*KASGSVKRYKASWSFSTTPKQKKWILAIIFPLVAKM 185
TW L LPPGKRA+ ++ VY+IK K+ GSV+RYKA +Q F VAKM
Sbjct: 413 TWDLVPLPPGKRAIGSRWVYKIKTKSDGSVERYKARLVAKGFSQQYGMDYEETFAPVAKM 472
Query: 186 XXXXXXXXXXXXRNWFANQMDVYNAFL 266
R W +QMDV NAFL
Sbjct: 473 TTIRTLIAVASIRQWDVSQMDVKNAFL 499
>gb|AAD24600.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1333
Score = 62.4 bits (150), Expect = 6e-08
Identities = 35/87 (40%), Positives = 48/87 (55%)
Frame = +3
Query: 6 TWILT*LPPGKRALDNK*VYRIK*KASGSVKRYKASWSFSTTPKQKKWILAIIFPLVAKM 185
TW + LPPGKRA+ ++ VY++K + GSV+RYKA +++ F VAKM
Sbjct: 852 TWTIEDLPPGKRAIGSQWVYKVKHNSDGSVERYKARLVALGNKQKEGEDYGETFAPVAKM 911
Query: 186 XXXXXXXXXXXXRNWFANQMDVYNAFL 266
RNW +QMDV+NAFL
Sbjct: 912 ATVRLFLDVAVKRNWEIHQMDVHNAFL 938
>gb|EOY00074.1| Cysteine-rich RLK (RECEPTOR-like protein kinase) 8 [Theobroma cacao]
Length = 1494
Score = 62.0 bits (149), Expect = 8e-08
Identities = 36/87 (41%), Positives = 48/87 (55%)
Frame = +3
Query: 6 TWILT*LPPGKRALDNK*VYRIK*KASGSVKRYKASWSFSTTPKQKKWILAIIFPLVAKM 185
TW+L+ LPPGKRA+D+K VY+IK GSV+RYKA + + F VAK+
Sbjct: 914 TWVLSKLPPGKRAIDSKWVYKIKYNLDGSVERYKARLVAKGYTQIEGVDFHETFAPVAKL 973
Query: 186 XXXXXXXXXXXXRNWFANQMDVYNAFL 266
+NW +Q+DV NAFL
Sbjct: 974 VTVRCLLAVASVQNWELHQLDVNNAFL 1000
>dbj|BAB10743.1| retroelement pol polyprotein-like [Arabidopsis thaliana]
Length = 1109
Score = 60.5 bits (145), Expect = 2e-07
Identities = 35/87 (40%), Positives = 49/87 (56%)
Frame = +3
Query: 6 TWILT*LPPGKRALDNK*VYRIK*KASGSVKRYKASWSFSTTPKQKKWILAIIFPLVAKM 185
T+ + LPPGKRAL NK VY+IK ++ G+++RYKA +++ F VAKM
Sbjct: 628 TFSIVNLPPGKRALGNKWVYKIKYRSDGAIERYKARLVVLGNCQKEGVDYDETFAPVAKM 687
Query: 186 XXXXXXXXXXXXRNWFANQMDVYNAFL 266
R+W +QMDV+NAFL
Sbjct: 688 STVRLFLGVAAARDWHVHQMDVHNAFL 714
>emb|CAA18107.1| LTR retrotransposon like protein [Arabidopsis thaliana]
gi|7269049|emb|CAB79159.1| LTR retrotransposon like
protein [Arabidopsis thaliana]
Length = 1109
Score = 60.5 bits (145), Expect = 2e-07
Identities = 35/87 (40%), Positives = 49/87 (56%)
Frame = +3
Query: 6 TWILT*LPPGKRALDNK*VYRIK*KASGSVKRYKASWSFSTTPKQKKWILAIIFPLVAKM 185
T+ + LPPGKRAL NK VY+IK ++ G+++RYKA +++ F VAKM
Sbjct: 628 TFSIVNLPPGKRALGNKWVYKIKYRSDGAIERYKARLVVLGNCQKEGVDYDETFAPVAKM 687
Query: 186 XXXXXXXXXXXXRNWFANQMDVYNAFL 266
R+W +QMDV+NAFL
Sbjct: 688 STVRLFLGVAAARDWHVHQMDVHNAFL 714
>gb|AAG50751.1|AC079733_19 polyprotein, putative [Arabidopsis thaliana]
Length = 1468
Score = 60.5 bits (145), Expect = 2e-07
Identities = 35/87 (40%), Positives = 49/87 (56%)
Frame = +3
Query: 6 TWILT*LPPGKRALDNK*VYRIK*KASGSVKRYKASWSFSTTPKQKKWILAIIFPLVAKM 185
T+ + LPPGKRAL NK VY+IK ++ G+++RYKA +++ F VAKM
Sbjct: 987 TFSIVNLPPGKRALGNKWVYKIKYRSDGAIERYKARLVVLGNCQKEGVDYDETFAPVAKM 1046
Query: 186 XXXXXXXXXXXXRNWFANQMDVYNAFL 266
R+W +QMDV+NAFL
Sbjct: 1047 STVRLFLGVAAARDWHVHQMDVHNAFL 1073
>emb|CAN60829.1| hypothetical protein VITISV_012059 [Vitis vinifera]
Length = 1128
Score = 58.9 bits (141), Expect = 7e-07
Identities = 35/87 (40%), Positives = 45/87 (51%)
Frame = +3
Query: 6 TWILT*LPPGKRALDNK*VYRIK*KASGSVKRYKASWSFSTTPKQKKWILAIIFPLVAKM 185
TW L LPP K A+ K VYR+K KA GSV+RYKA +Q+ + VAKM
Sbjct: 644 TWDLAILPPNKTAIGCKWVYRVKFKADGSVERYKARLVAKGYTQQEGLDFFDTYSPVAKM 703
Query: 186 XXXXXXXXXXXXRNWFANQMDVYNAFL 266
+ W+ +Q+DV NAFL
Sbjct: 704 TTVRVLLAIAAAKQWYLHQLDVNNAFL 730
>gb|ACB45089.1| putative polyprotein [Solanum habrochaites]
Length = 849
Score = 57.0 bits (136), Expect = 3e-06
Identities = 34/87 (39%), Positives = 43/87 (49%)
Frame = +3
Query: 6 TWILT*LPPGKRALDNK*VYRIK*KASGSVKRYKASWSFSTTPKQKKWILAIIFPLVAKM 185
TW L LP GK+A+ K VY++K A G V+RYKA +Q+ F V KM
Sbjct: 704 TWDLVPLPLGKKAIGCKWVYKVKFNAQGEVERYKARLVAKGYTQQEGLDYQETFSPVVKM 763
Query: 186 XXXXXXXXXXXXRNWFANQMDVYNAFL 266
WF +QMDV+NAFL
Sbjct: 764 VTVRVVLSLAAMHGWFLHQMDVFNAFL 790
>dbj|BAB10837.1| retroelement pol polyprotein-like [Arabidopsis thaliana]
Length = 1462
Score = 56.6 bits (135), Expect = 3e-06
Identities = 33/88 (37%), Positives = 48/88 (54%)
Frame = +3
Query: 3 GTWILT*LPPGKRALDNK*VYRIK*KASGSVKRYKASWSFSTTPKQKKWILAIIFPLVAK 182
GTW + LPPGK+AL K V+R+K K+ G+++R+KA + + + F VAK
Sbjct: 966 GTWTVEDLPPGKKALGCKWVFRLKYKSDGTLERHKARLVVLGNKQTEGIDYSETFAPVAK 1025
Query: 183 MXXXXXXXXXXXXRNWFANQMDVYNAFL 266
M +W +QMDV+NAFL
Sbjct: 1026 MVTVRAFLQQVASLDWEVHQMDVHNAFL 1053
>gb|AAG09097.1|AC009323_8 Putative retroelement polyprotein [Arabidopsis thaliana]
Length = 1486
Score = 56.2 bits (134), Expect = 4e-06
Identities = 33/88 (37%), Positives = 47/88 (53%)
Frame = +3
Query: 3 GTWILT*LPPGKRALDNK*VYRIK*KASGSVKRYKASWSFSTTPKQKKWILAIIFPLVAK 182
GTW + LPPGK+AL K V+R+K K+ G+++R+KA + + F VAK
Sbjct: 1004 GTWTVEDLPPGKKALGCKWVFRLKYKSDGTLERHKARLVVLGNNQTEGLDYTETFAPVAK 1063
Query: 183 MXXXXXXXXXXXXRNWFANQMDVYNAFL 266
M +W +QMDV+NAFL
Sbjct: 1064 MVTVRAFLQQVVSLDWEVHQMDVHNAFL 1091
>gb|ACB45081.1| putative polyprotein [Solanum habrochaites]
Length = 559
Score = 55.8 bits (133), Expect = 6e-06
Identities = 34/87 (39%), Positives = 44/87 (50%)
Frame = +3
Query: 6 TWILT*LPPGKRALDNK*VYRIK*KASGSVKRYKASWSFSTTPKQKKWILAIIFPLVAKM 185
TW + LP GK+A+ K VY+IK KA+G V+R+KA +Q+ F V KM
Sbjct: 361 TWEVVTLPIGKKAIGCKWVYKIKYKANGEVERFKARLVAKGYSQQEGLDYQDTFSPVVKM 420
Query: 186 XXXXXXXXXXXXRNWFANQMDVYNAFL 266
+ W QMDVYNAFL
Sbjct: 421 VTVRTVLTLAASKGWDVQQMDVYNAFL 447
>emb|CAN65820.1| hypothetical protein VITISV_042324 [Vitis vinifera]
Length = 1262
Score = 55.8 bits (133), Expect = 6e-06
Identities = 33/87 (37%), Positives = 44/87 (50%)
Frame = +3
Query: 6 TWILT*LPPGKRALDNK*VYRIK*KASGSVKRYKASWSFSTTPKQKKWILAIIFPLVAKM 185
TW L LPP K + K VY++K KA GSV+RYKA +Q+ + VAKM
Sbjct: 950 TWDLAILPPNKTTIGCKWVYQVKFKADGSVERYKARLVAKGYTQQEGLDFFDTYSPVAKM 1009
Query: 186 XXXXXXXXXXXXRNWFANQMDVYNAFL 266
+ W+ +Q+DV NAFL
Sbjct: 1010 TTVRVLLAIAATKQWYLHQLDVNNAFL 1036
>ref|XP_004310176.1| PREDICTED: uncharacterized protein LOC101315202 [Fragaria vesca
subsp. vesca]
Length = 1149
Score = 55.5 bits (132), Expect = 7e-06
Identities = 33/86 (38%), Positives = 44/86 (51%)
Frame = +3
Query: 6 TWILT*LPPGKRALDNK*VYRIK*KASGSVKRYKASWSFSTTPKQKKWILAIIFPLVAKM 185
TW + LPPG R + K VY+IK A GS++RYKA +++ F VAK+
Sbjct: 445 TWSMVPLPPGHRPIGCKWVYKIKYHADGSIERYKARLVAKGFTQREGIDYKDTFAPVAKL 504
Query: 186 XXXXXXXXXXXXRNWFANQMDVYNAF 263
RNW +QMDV+NAF
Sbjct: 505 ITVRCLLAVAAIRNWPLHQMDVHNAF 530
>gb|AAG51258.1|AC025782_3 Ty1/copia-element polyprotein [Arabidopsis thaliana]
Length = 1152
Score = 55.5 bits (132), Expect = 7e-06
Identities = 32/88 (36%), Positives = 48/88 (54%)
Frame = +3
Query: 3 GTWILT*LPPGKRALDNK*VYRIK*KASGSVKRYKASWSFSTTPKQKKWILAIIFPLVAK 182
GTW +T LP G +A+ +K V+RIK ++G+V+RYKA +++ F V K
Sbjct: 962 GTWDITKLPQGVKAIGSKWVFRIKYNSNGTVERYKARLVALGNHQKEGIDFTKTFAPVVK 1021
Query: 183 MXXXXXXXXXXXXRNWFANQMDVYNAFL 266
M ++W +QMDV+NAFL
Sbjct: 1022 MQTVRLLLDVAAAKDWELHQMDVHNAFL 1049
>gb|AAD25646.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1461
Score = 55.5 bits (132), Expect = 7e-06
Identities = 31/87 (35%), Positives = 46/87 (52%)
Frame = +3
Query: 6 TWILT*LPPGKRALDNK*VYRIK*KASGSVKRYKASWSFSTTPKQKKWILAIIFPLVAKM 185
TW +T LPPGK+A+ K V+ +K A GS++R+KA +++ F VAKM
Sbjct: 975 TWEITSLPPGKKAVGCKWVFTVKFHADGSLERFKARIVAKGYTQKEGLDYTETFSPVAKM 1034
Query: 186 XXXXXXXXXXXXRNWFANQMDVYNAFL 266
+ W+ NQ+D+ NAFL
Sbjct: 1035 ATVKLLLKVSASKKWYLNQLDISNAFL 1061
>emb|CAN64502.1| hypothetical protein VITISV_020342 [Vitis vinifera]
Length = 660
Score = 55.1 bits (131), Expect = 1e-05
Identities = 32/87 (36%), Positives = 45/87 (51%)
Frame = +3
Query: 6 TWILT*LPPGKRALDNK*VYRIK*KASGSVKRYKASWSFSTTPKQKKWILAIIFPLVAKM 185
TW L LPP K A+ K VY++K KA GSV+RYKA +Q+ + +AKM
Sbjct: 326 TWDLAILPPNKTAIGCKWVYQVKFKADGSVERYKARLVAKGYTQQEGLDFFNTYSPIAKM 385
Query: 186 XXXXXXXXXXXXRNWFANQMDVYNAFL 266
+ W+ +Q++V NAFL
Sbjct: 386 TIVRVLLAIATAKQWYLHQLNVNNAFL 412