BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Catharanthus22_contig00028581
         (694 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|BAB10743.1| retroelement pol polyprotein-like [Arabidopsis t...   204   2e-50
emb|CAA18107.1| LTR retrotransposon like protein [Arabidopsis th...   204   2e-50
gb|AAG50751.1|AC079733_19 polyprotein, putative [Arabidopsis tha...   203   5e-50
emb|CAN83015.1| hypothetical protein VITISV_041694 [Vitis vinifera]   197   2e-48
gb|AAD24600.1| putative retroelement pol polyprotein [Arabidopsi...   197   2e-48
emb|CAN61658.1| hypothetical protein VITISV_040310 [Vitis vinifera]   197   3e-48
emb|CAN73272.1| hypothetical protein VITISV_013115 [Vitis vinifera]   196   4e-48
emb|CAN80919.1| hypothetical protein VITISV_002640 [Vitis vinifera]   195   1e-47
gb|AAG09097.1|AC009323_8 Putative retroelement polyprotein [Arab...   194   2e-47
dbj|BAA97287.1| retroelement pol polyprotein-like [Arabidopsis t...   193   5e-47
dbj|BAB10837.1| retroelement pol polyprotein-like [Arabidopsis t...   192   1e-46
emb|CAN82171.1| hypothetical protein VITISV_040546 [Vitis vinifera]   191   1e-46
gb|AAB87099.1| putative retroelement pol polyprotein [Arabidopsi...   191   2e-46
gb|AAM98191.1| unknown protein [Arabidopsis thaliana] gi|3860380...   191   2e-46
emb|CAN76645.1| hypothetical protein VITISV_004685 [Vitis vinifera]   190   4e-46
gb|AAD19784.1| putative retroelement pol polyprotein [Arabidopsi...   185   1e-44
gb|AAD23883.1| putative retroelement pol polyprotein [Arabidopsi...   181   3e-43
emb|CAN81016.1| hypothetical protein VITISV_025518 [Vitis vinifera]   179   1e-42
gb|AAC98469.1| putative retroelement pol polyprotein [Arabidopsi...   174   2e-41
emb|CAN82073.1| hypothetical protein VITISV_036538 [Vitis vinifera]   174   3e-41

>dbj|BAB10743.1| retroelement pol polyprotein-like [Arabidopsis thaliana]
          Length = 1109

 Score =  204 bits (520), Expect = 2e-50
 Identities = 116/251 (46%), Positives = 147/251 (58%), Gaps = 20/251 (7%)
 Frame = -1

Query: 694  RLVFIGNTQREGKDYTETFAPIAKIVIVRTLLSITAARRWEVHQMDVHNAFLHGDLTEEV 515
            RLV +GN Q+EG DY ETFAP+AK+  VR  L + AAR W VHQMDVHNAFLHGDL EEV
Sbjct: 663  RLVVLGNCQKEGVDYDETFAPVAKMSTVRLFLGVAAARDWHVHQMDVHNAFLHGDLKEEV 722

Query: 514  YMS-PK*FS*WSLPDTARLVLKTNSLLASIRVYSVLFGLLVIYSSAAHCISLYFNLC**L 338
            YM  P+ F         RL      L  + R +       +        +S Y      L
Sbjct: 723  YMKLPQGFQCDDPSKVCRLHKSLYGLKQAPRCWFSKLSSALKQYGFTQSLSDYS-----L 777

Query: 337  IDF*NDSAYI-------------------AHLKSYLSSCFHMKDLGTLKYFLSIEVARSP 215
              + ND  ++                   A  KSYL SCFHMKDLG LKYFL IEV+R+ 
Sbjct: 778  FSYNNDGVFVHVLVYVDDLIISGSCPDAVAQFKSYLESCFHMKDLGLLKYFLGIEVSRNA 837

Query: 214  SGFYLSQHKYALELISEVCLLGAKPASTPIEPNHHLATTFDDFLLQDDRYRRLICKLIYL 35
             GFYLSQ KY L++ISE+ LLGA+P++ P+E NH L+ +    L    RYRRL+ +LIYL
Sbjct: 838  QGFYLSQRKYVLDIISEMGLLGARPSAFPLEQNHKLSLSTSPLLSDSSRYRRLVGRLIYL 897

Query: 34   SITRPDLAYTV 2
            ++TRP+L+Y+V
Sbjct: 898  AVTRPELSYSV 908


>emb|CAA18107.1| LTR retrotransposon like protein [Arabidopsis thaliana]
            gi|7269049|emb|CAB79159.1| LTR retrotransposon like
            protein [Arabidopsis thaliana]
          Length = 1109

 Score =  204 bits (520), Expect = 2e-50
 Identities = 116/251 (46%), Positives = 147/251 (58%), Gaps = 20/251 (7%)
 Frame = -1

Query: 694  RLVFIGNTQREGKDYTETFAPIAKIVIVRTLLSITAARRWEVHQMDVHNAFLHGDLTEEV 515
            RLV +GN Q+EG DY ETFAP+AK+  VR  L + AAR W VHQMDVHNAFLHGDL EEV
Sbjct: 663  RLVVLGNCQKEGVDYDETFAPVAKMSTVRLFLGVAAARDWHVHQMDVHNAFLHGDLKEEV 722

Query: 514  YMS-PK*FS*WSLPDTARLVLKTNSLLASIRVYSVLFGLLVIYSSAAHCISLYFNLC**L 338
            YM  P+ F         RL      L  + R +       +        +S Y      L
Sbjct: 723  YMKLPQGFQCDDPSKVCRLHKSLYGLKQAPRCWFSKLSSALKQYGFTQSLSDYS-----L 777

Query: 337  IDF*NDSAYI-------------------AHLKSYLSSCFHMKDLGTLKYFLSIEVARSP 215
              + ND  ++                   A  KSYL SCFHMKDLG LKYFL IEV+R+ 
Sbjct: 778  FSYNNDGVFVHVLVYVDDLIISGSCPDAVAQFKSYLESCFHMKDLGLLKYFLGIEVSRNA 837

Query: 214  SGFYLSQHKYALELISEVCLLGAKPASTPIEPNHHLATTFDDFLLQDDRYRRLICKLIYL 35
             GFYLSQ KY L++ISE+ LLGA+P++ P+E NH L+ +    L    RYRRL+ +LIYL
Sbjct: 838  QGFYLSQRKYVLDIISEMGLLGARPSAFPLEQNHKLSLSTSPLLSDSSRYRRLVGRLIYL 897

Query: 34   SITRPDLAYTV 2
            ++TRP+L+Y+V
Sbjct: 898  AVTRPELSYSV 908


>gb|AAG50751.1|AC079733_19 polyprotein, putative [Arabidopsis thaliana]
          Length = 1468

 Score =  203 bits (516), Expect = 5e-50
 Identities = 116/251 (46%), Positives = 146/251 (58%), Gaps = 20/251 (7%)
 Frame = -1

Query: 694  RLVFIGNTQREGKDYTETFAPIAKIVIVRTLLSITAARRWEVHQMDVHNAFLHGDLTEEV 515
            RLV +GN Q+EG DY ETFAP+AK+  VR  L + AAR W VHQMDVHNAFLHGDL EEV
Sbjct: 1022 RLVVLGNCQKEGVDYDETFAPVAKMSTVRLFLGVAAARDWHVHQMDVHNAFLHGDLKEEV 1081

Query: 514  YMS-PK*FS*WSLPDTARLVLKTNSLLASIRVYSVLFGLLVIYSSAAHCISLYFNLC**L 338
            YM  P+ F         RL      L  + R +       +        +S Y      L
Sbjct: 1082 YMKLPQGFQCDDPSKVCRLHKSLYGLKQAPRCWFSKLSSALKQYGFTQSLSDYS-----L 1136

Query: 337  IDF*NDSAYI-------------------AHLKSYLSSCFHMKDLGTLKYFLSIEVARSP 215
              + ND  ++                   A  KSYL SCFHMKDLG LKYFL IEV+R+ 
Sbjct: 1137 FSYNNDGIFVHVLVYVDDLIISGSCPDAVAQFKSYLESCFHMKDLGLLKYFLGIEVSRNA 1196

Query: 214  SGFYLSQHKYALELISEVCLLGAKPASTPIEPNHHLATTFDDFLLQDDRYRRLICKLIYL 35
             GFYLSQ KY L++ISE+ LLGA+P++ P+E NH L+ +    L    RYRRL+ +LIYL
Sbjct: 1197 QGFYLSQRKYVLDIISEMGLLGARPSAFPLEQNHKLSLSTSPLLSDSSRYRRLVGRLIYL 1256

Query: 34   SITRPDLAYTV 2
             +TRP+L+Y+V
Sbjct: 1257 VVTRPELSYSV 1267


>emb|CAN83015.1| hypothetical protein VITISV_041694 [Vitis vinifera]
          Length = 1099

 Score =  197 bits (502), Expect = 2e-48
 Identities = 116/248 (46%), Positives = 153/248 (61%), Gaps = 17/248 (6%)
 Frame = -1

Query: 694  RLVFIGNTQREGKDYTETFAPIAKIVIVRTLLSITAARRWEVHQMDVHNAFLHGDLTEEV 515
            RLV +GN Q  G DY ETF+P+AK+ +VR  L+I A++ WE+HQMDVHNAFLHGDL EEV
Sbjct: 653  RLVVLGNHQEAGIDYHETFSPVAKMTMVRAFLAIAASKNWELHQMDVHNAFLHGDLEEEV 712

Query: 514  YMS-PK*FS*WSLPDTARLVLKT------------NSLLASIRVYSVLFGL----LVIYS 386
            YM  P  F   S P+    + K+            + L+ +++ Y  L       L  Y+
Sbjct: 713  YMKLPPGFE-RSDPNLVCRLRKSLYGLKQAPRCWFSKLVTALKGYGFLQSYSDYSLFTYT 771

Query: 385  SAAHCISLYFNLC**LIDF*NDSAYIAHLKSYLSSCFHMKDLGTLKYFLSIEVARSPSGF 206
            +    I++   +   +I   NDSA +   K+YLS CF MKDLG LKYFL IEVARS +G 
Sbjct: 772  TGNVQINVLVYVDDLIISG-NDSAALKTFKAYLSDCFKMKDLGVLKYFLGIEVARSSAGL 830

Query: 205  YLSQHKYALELISEVCLLGAKPASTPIEPNHHLATTFDDFLLQDDRYRRLICKLIYLSIT 26
            +L Q KY L+++SE  LLGAKP   PIE NH L     + L   + YRRL+ +LIYL++T
Sbjct: 831  FLCQRKYTLDIVSEAGLLGAKPCGFPIEQNHRLGLANGELLSNPESYRRLVGRLIYLAVT 890

Query: 25   RPDLAYTV 2
            RPDLAY+V
Sbjct: 891  RPDLAYSV 898


>gb|AAD24600.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1333

 Score =  197 bits (502), Expect = 2e-48
 Identities = 117/252 (46%), Positives = 144/252 (57%), Gaps = 21/252 (8%)
 Frame = -1

Query: 694  RLVFIGNTQREGKDYTETFAPIAKIVIVRTLLSITAARRWEVHQMDVHNAFLHGDLTEEV 515
            RLV +GN Q+EG+DY ETFAP+AK+  VR  L +   R WE+HQMDVHNAFLHGDL EEV
Sbjct: 887  RLVALGNKQKEGEDYGETFAPVAKMATVRLFLDVAVKRNWEIHQMDVHNAFLHGDLREEV 946

Query: 514  YMS-PK*FS*WSLPDTARL--------------------VLKTNSLLASIRVYSVLFGLL 398
            YM  P  F         RL                     LK      S+  YS+     
Sbjct: 947  YMKLPPGFEASHPNKVCRLRKALYGLKQAPRCWFEKLTTALKRYGFQQSLADYSLF---T 1003

Query: 397  VIYSSAAHCISLYFNLC**LIDF*NDSAYIAHLKSYLSSCFHMKDLGTLKYFLSIEVARS 218
            ++  S    I +Y +    LI   N        K YL+SCFHMKDLG LKYFL IEVARS
Sbjct: 1004 LVKGSVRIKILIYVDD---LIITGNSQRATQQFKEYLASCFHMKDLGPLKYFLGIEVARS 1060

Query: 217  PSGFYLSQHKYALELISEVCLLGAKPASTPIEPNHHLATTFDDFLLQDDRYRRLICKLIY 38
             +G Y+ Q KYAL++ISE  LLG KPA+ P+E NH L  +    L    RYRRL+ +LIY
Sbjct: 1061 TTGIYICQRKYALDIISETGLLGVKPANFPLEQNHKLGLSTSPLLTDPQRYRRLVGRLIY 1120

Query: 37   LSITRPDLAYTV 2
            L++TR DLA++V
Sbjct: 1121 LAVTRLDLAFSV 1132


>emb|CAN61658.1| hypothetical protein VITISV_040310 [Vitis vinifera]
          Length = 1461

 Score =  197 bits (501), Expect = 3e-48
 Identities = 120/252 (47%), Positives = 148/252 (58%), Gaps = 21/252 (8%)
 Frame = -1

Query: 694  RLVFIGNTQREGKDYTETFAPIAKIVIVRTLLSITAARRWEVHQMDVHNAFLHGDLTEEV 515
            RLV +GN Q  G DY ETF+P+AK+  VRT L+I A++ WE+HQMDVHNAFLHGDL EEV
Sbjct: 1015 RLVVLGNHQEAGIDYHETFSPVAKMTTVRTFLAIAASKNWELHQMDVHNAFLHGDLEEEV 1074

Query: 514  YMS-PK*F-------------S*WSLPDTARL-------VLKTNSLLASIRVYSVLFGLL 398
            YM  P  F             S + L    R         LK    L S   YS     L
Sbjct: 1075 YMKLPPGFERSDPNLVCRLRKSLYGLKQAPRCWFAKLVTALKGYGFLQSYSDYS-----L 1129

Query: 397  VIYSSAAHCISLYFNLC**LIDF*NDSAYIAHLKSYLSSCFHMKDLGTLKYFLSIEVARS 218
              Y+     I++   +   +I   NDSA +   K+YLS CF MKDLG LKYFL IEVARS
Sbjct: 1130 FTYTKGNVQINVLVYVDDLIISG-NDSAALKTFKAYLSDCFKMKDLGVLKYFLGIEVARS 1188

Query: 217  PSGFYLSQHKYALELISEVCLLGAKPASTPIEPNHHLATTFDDFLLQDDRYRRLICKLIY 38
             +G +L Q KY L+++SE  LLGAKP   PIE NH L     + L   + YRRL+ +LIY
Sbjct: 1189 SAGLFLCQRKYTLDIVSEAGLLGAKPCGFPIEQNHRLGLANGELLSNLESYRRLVGRLIY 1248

Query: 37   LSITRPDLAYTV 2
            L++TRPDLAY+V
Sbjct: 1249 LAVTRPDLAYSV 1260


>emb|CAN73272.1| hypothetical protein VITISV_013115 [Vitis vinifera]
          Length = 1178

 Score =  196 bits (499), Expect = 4e-48
 Identities = 116/248 (46%), Positives = 152/248 (61%), Gaps = 17/248 (6%)
 Frame = -1

Query: 694  RLVFIGNTQREGKDYTETFAPIAKIVIVRTLLSITAARRWEVHQMDVHNAFLHGDLTEEV 515
            RLV +GN Q  G DY ETF+P+AK+  VR  L+I A++ WE+HQMDVHNAFLHGDL EEV
Sbjct: 732  RLVVLGNHQEAGIDYHETFSPVAKMTTVRAFLAIAASKNWELHQMDVHNAFLHGDLEEEV 791

Query: 514  YMS-PK*FS*WSLPDTARLVLKT------------NSLLASIRVYSVLFGL----LVIYS 386
            YM  P  F   S P+    + K+            + L+ +++ Y  L       L  Y+
Sbjct: 792  YMKLPPGFE-RSDPNLVCRLRKSLYGLKQAPRCWFSKLVTALKGYGFLQSYSDYSLFTYT 850

Query: 385  SAAHCISLYFNLC**LIDF*NDSAYIAHLKSYLSSCFHMKDLGTLKYFLSIEVARSPSGF 206
            +    I++   +   +I   NDSA +   K+YLS CF MKDLG LKYFL IEVARS +G 
Sbjct: 851  TGNVQINVLVYVDDLIISG-NDSAALKTFKAYLSDCFKMKDLGVLKYFLGIEVARSSAGL 909

Query: 205  YLSQHKYALELISEVCLLGAKPASTPIEPNHHLATTFDDFLLQDDRYRRLICKLIYLSIT 26
            +L Q KY L+++SE  LLGAKP   PIE NH L     + L   + YRRL+ +LIYL++T
Sbjct: 910  FLCQRKYTLDIVSEAGLLGAKPCGFPIEQNHRLXLANGELLSNPESYRRLVGRLIYLAVT 969

Query: 25   RPDLAYTV 2
            RPDLAY+V
Sbjct: 970  RPDLAYSV 977


>emb|CAN80919.1| hypothetical protein VITISV_002640 [Vitis vinifera]
          Length = 1450

 Score =  195 bits (496), Expect = 1e-47
 Identities = 116/246 (47%), Positives = 145/246 (58%), Gaps = 15/246 (6%)
 Frame = -1

Query: 694  RLVFIGNTQREGKDYTETFAPIAKIVIVRTLLSITAARRWEVHQMDVHNAFLHGDLTEEV 515
            RLV +GN Q  G DY ETF+P+AK+  VR  L+I A++ WE+HQMDVHNAFLHGDL EEV
Sbjct: 1015 RLVVLGNHQEAGIDYHETFSPVAKMTTVRAFLAIAASKNWELHQMDVHNAFLHGDLEEEV 1074

Query: 514  YMS-PK*FS*WSLPDTARLVLKTNSLLASIRVYSVL-------FGLLVIYSSAAHCISLY 359
            YM  P  F         RL      L  + R +          +G L  YS+ +      
Sbjct: 1075 YMKLPPGFESSDPNLVCRLRKSLYGLKQAPRCWFAKLVTALKGYGFLQSYSNYSLFTYTK 1134

Query: 358  FNL-------C**LIDF*NDSAYIAHLKSYLSSCFHMKDLGTLKYFLSIEVARSPSGFYL 200
             N+          LI   NDSA +   K+YL+ CF MKDLG LKYFL IEVARS +G +L
Sbjct: 1135 GNVQINVLVYVDDLIISRNDSAALKTFKAYLNDCFKMKDLGVLKYFLGIEVARSSAGLFL 1194

Query: 199  SQHKYALELISEVCLLGAKPASTPIEPNHHLATTFDDFLLQDDRYRRLICKLIYLSITRP 20
             Q KY L+++SE  LLGAKP   PIE NH L     + L   + YRRL+ +LIYL++TRP
Sbjct: 1195 CQRKYTLDIVSETGLLGAKPCGFPIEQNHRLGLANGELLSNPESYRRLVGRLIYLAVTRP 1254

Query: 19   DLAYTV 2
            DLAY+V
Sbjct: 1255 DLAYSV 1260


>gb|AAG09097.1|AC009323_8 Putative retroelement polyprotein [Arabidopsis thaliana]
          Length = 1486

 Score =  194 bits (493), Expect = 2e-47
 Identities = 117/252 (46%), Positives = 142/252 (56%), Gaps = 21/252 (8%)
 Frame = -1

Query: 694  RLVFIGNTQREGKDYTETFAPIAKIVIVRTLLSITAARRWEVHQMDVHNAFLHGDLTEEV 515
            RLV +GN Q EG DYTETFAP+AK+V VR  L    +  WEVHQMDVHNAFLHGDL EEV
Sbjct: 1040 RLVVLGNNQTEGLDYTETFAPVAKMVTVRAFLQQVVSLDWEVHQMDVHNAFLHGDLDEEV 1099

Query: 514  YMS-PK*FS*WSLPDTARL--------------------VLKTNSLLASIRVYSVLFGLL 398
            YM  P  F         RL                     LK    +  I  YS    L 
Sbjct: 1100 YMQFPPGFRTGDKTKVCRLRKSLYGLKQAPRCWFAKLTSALKNYGFIQDISDYS----LF 1155

Query: 397  VIYSSAAHCISLYFNLC**LIDF*NDSAYIAHLKSYLSSCFHMKDLGTLKYFLSIEVARS 218
            + + +      L +     LI      A I   K YLSSCF+MKDLG L+YFL IEVARS
Sbjct: 1156 IFHKNGVRLHVLVY--VDDLIITGTTIAVITEFKHYLSSCFYMKDLGILRYFLGIEVARS 1213

Query: 217  PSGFYLSQHKYALELISEVCLLGAKPASTPIEPNHHLATTFDDFLLQDDRYRRLICKLIY 38
            P G YL Q KYAL++I+E  LLG KPAS P++ NH LA    + +    RYRRL+ ++IY
Sbjct: 1214 PEGIYLCQRKYALDIITETGLLGVKPASFPLDQNHKLAFATGETIDDPLRYRRLVGRIIY 1273

Query: 37   LSITRPDLAYTV 2
            L+ TRP+L+Y +
Sbjct: 1274 LATTRPELSYVI 1285


>dbj|BAA97287.1| retroelement pol polyprotein-like [Arabidopsis thaliana]
          Length = 1491

 Score =  193 bits (490), Expect = 5e-47
 Identities = 115/247 (46%), Positives = 149/247 (60%), Gaps = 16/247 (6%)
 Frame = -1

Query: 694  RLVFIGNTQREGKDYTETFAPIAKIVIVRTLLSITAARRWEVHQMDVHNAFLHGDLTEEV 515
            RLV  GN Q EG+DYTETFAP+ K+  VRTLL + AA +WEV+QMDVHNAFLHGDL EEV
Sbjct: 1045 RLVVQGNNQIEGEDYTETFAPVVKMTTVRTLLRLVAANQWEVYQMDVHNAFLHGDLEEEV 1104

Query: 514  YMSPK*FS*WSLPDTARLVLKT------------NSLLASIRVYSVLFGLLVIYSSAAHC 371
            YM        S PD    + K+              L  +++ +  + G       +  C
Sbjct: 1105 YMKLPPGFRHSHPDKVCRLRKSLYGLKQAPRCWFKKLSDALKRFGFIQGYEDYSFFSYSC 1164

Query: 370  ISLYFNLC**LIDF*---NDSAYIAHLKSYLSSCFHMKDLGTLKYFLSIEVARSPSGFYL 200
              +   +   + D     ND   +   K YL  CF MKDLG LKYFL IEV+R P G +L
Sbjct: 1165 KGIELRVLVYVDDLIICGNDEYMVQKFKEYLGRCFSMKDLGKLKYFLGIEVSRGPDGIFL 1224

Query: 199  SQHKYALELISEVCLLGAKPASTPIEPNHHLATTFDDFLLQDDR-YRRLICKLIYLSITR 23
            SQ KYAL++IS+   LGA+PA TP+E NHHLA+  D  LLQD + +RRL+ +L+YL  TR
Sbjct: 1225 SQRKYALDIISDSGTLGARPAYTPLEQNHHLASD-DGPLLQDPKPFRRLVGRLLYLLHTR 1283

Query: 22   PDLAYTV 2
            P+L+Y+V
Sbjct: 1284 PELSYSV 1290


>dbj|BAB10837.1| retroelement pol polyprotein-like [Arabidopsis thaliana]
          Length = 1462

 Score =  192 bits (487), Expect = 1e-46
 Identities = 116/250 (46%), Positives = 150/250 (60%), Gaps = 19/250 (7%)
 Frame = -1

Query: 694  RLVFIGNTQREGKDYTETFAPIAKIVIVRTLLSITAARRWEVHQMDVHNAFLHGDLTEEV 515
            RLV +GN Q EG DY+ETFAP+AK+V VR  L   A+  WEVHQMDVHNAFLHGDL EEV
Sbjct: 1002 RLVVLGNKQTEGIDYSETFAPVAKMVTVRAFLQQVASLDWEVHQMDVHNAFLHGDLDEEV 1061

Query: 514  YMS-PK*FS*WSLPDTARLVLKTNSLLASIRV-----YSVL------FGLLV------IY 389
            Y+  P  F      D  R V +    L  ++      ++ L      +G +       ++
Sbjct: 1062 YIKFPPGFG----SDDNRKVCRLRKALYGLKQAPRCWFAKLTTALNDYGFIQDISDYSLF 1117

Query: 388  SSAAHCISLYFNL-C**LIDF*NDSAYIAHLKSYLSSCFHMKDLGTLKYFLSIEVARSPS 212
            +   + I L+  +    LI   +    I   K YLSSCF+MKDLG L+YFL IEVARSP+
Sbjct: 1118 TMERNGIRLHILVYVDDLIITGSSLDVITKFKGYLSSCFYMKDLGILRYFLGIEVARSPA 1177

Query: 211  GFYLSQHKYALELISEVCLLGAKPASTPIEPNHHLATTFDDFLLQDDRYRRLICKLIYLS 32
            G YL Q KYA+++I+E  LLG  PAS P+E NH LA  F D +    RYRRL+ +LIYL 
Sbjct: 1178 GIYLCQRKYAIDIITETGLLGVWPASHPLEQNHKLALAFGDTISDPSRYRRLVGRLIYLG 1237

Query: 31   ITRPDLAYTV 2
             TRP+L+Y +
Sbjct: 1238 TTRPELSYAI 1247


>emb|CAN82171.1| hypothetical protein VITISV_040546 [Vitis vinifera]
          Length = 1129

 Score =  191 bits (486), Expect = 1e-46
 Identities = 117/252 (46%), Positives = 146/252 (57%), Gaps = 21/252 (8%)
 Frame = -1

Query: 694  RLVFIGNTQREGKDYTETFAPIAKIVIVRTLLSITAARRWEVHQMDVHNAFLHGDLTEEV 515
            RLV +GN Q  G DY ETF+P+AK+  VR  L+I A++ WE+HQMDVHNAFLHGDL EEV
Sbjct: 683  RLVVLGNHQEAGIDYHETFSPVAKMTTVRAFLAIAASKNWELHQMDVHNAFLHGDLEEEV 742

Query: 514  YMS-PK*F-------------S*WSLPDTARL-------VLKTNSLLASIRVYSVLFGLL 398
            YM  P  F             S + L    R         LK    L S   YS     L
Sbjct: 743  YMKLPPGFESSDPNLVCRLWKSLYGLKQAPRCWFAKLVTALKGYGFLQSYSDYS-----L 797

Query: 397  VIYSSAAHCISLYFNLC**LIDF*NDSAYIAHLKSYLSSCFHMKDLGTLKYFLSIEVARS 218
              Y+     I++   +   +I   NDSA +   K+YLS CF MKDLG LKYFL IEVARS
Sbjct: 798  FTYTKGNVQINVLVYVDDLIISG-NDSAALKTFKAYLSDCFKMKDLGVLKYFLGIEVARS 856

Query: 217  PSGFYLSQHKYALELISEVCLLGAKPASTPIEPNHHLATTFDDFLLQDDRYRRLICKLIY 38
             +G +L Q KY L+++SE  LLGAKP    IE NH L     + L   + YRRL+ +LIY
Sbjct: 857  SAGLFLCQRKYTLDIVSEAGLLGAKPCGFSIEQNHRLGLANGELLSNPESYRRLVGRLIY 916

Query: 37   LSITRPDLAYTV 2
            L++TRP+LAY+V
Sbjct: 917  LAVTRPNLAYSV 928


>gb|AAB87099.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1496

 Score =  191 bits (485), Expect = 2e-46
 Identities = 115/246 (46%), Positives = 146/246 (59%), Gaps = 15/246 (6%)
 Frame = -1

Query: 694  RLVFIGNTQREGKDYTETFAPIAKIVIVRTLLSITAARRWEVHQMDVHNAFLHGDLTEEV 515
            RLV +GN Q+EG D+ ETFAP+AK+  VRT+L++ AA+ WEVHQMDVHNAFLHGDL EEV
Sbjct: 1050 RLVVMGNHQKEGVDFKETFAPVAKLTTVRTILAVAAAKDWEVHQMDVHNAFLHGDLEEEV 1109

Query: 514  YMS-PK*FS*WSLPDTARLVLKTNSLLASIRV-YSVLFGLL--VIYSSAAHCISLY---- 359
            YM  P  F         RL      L  + R  +S L   L  + ++ +    SL+    
Sbjct: 1110 YMRLPPGFKCSDPSKVCRLRKSLYGLKQAPRCWFSKLSTALRNIGFTQSYEDYSLFSLKN 1169

Query: 358  -------FNLC**LIDF*NDSAYIAHLKSYLSSCFHMKDLGTLKYFLSIEVARSPSGFYL 200
                         LI   N+   I   KS L  CFHMKDLG LKYFL +EV+R P GF L
Sbjct: 1170 GDTIIHVLVYVDDLIVAGNNLDAIDRFKSQLHKCFHMKDLGKLKYFLGLEVSRGPDGFCL 1229

Query: 199  SQHKYALELISEVCLLGAKPASTPIEPNHHLATTFDDFLLQDDRYRRLICKLIYLSITRP 20
            SQ KYAL+++ E  LLG KP++ PI  NH LA+         ++YRRL+ + IYL+ITRP
Sbjct: 1230 SQRKYALDIVKETGLLGCKPSAVPIALNHKLASITGPVFTNPEQYRRLVGRFIYLTITRP 1289

Query: 19   DLAYTV 2
            DL+Y V
Sbjct: 1290 DLSYAV 1295


>gb|AAM98191.1| unknown protein [Arabidopsis thaliana] gi|38603804|gb|AAR24647.1|
            At2g23330 [Arabidopsis thaliana]
            gi|110742535|dbj|BAE99183.1| putative retroelement pol
            polyprotein [Arabidopsis thaliana]
          Length = 776

 Score =  191 bits (485), Expect = 2e-46
 Identities = 115/246 (46%), Positives = 146/246 (59%), Gaps = 15/246 (6%)
 Frame = -1

Query: 694  RLVFIGNTQREGKDYTETFAPIAKIVIVRTLLSITAARRWEVHQMDVHNAFLHGDLTEEV 515
            RLV +GN Q+EG D+ ETFAP+AK+  VRT+L++ AA+ WEVHQMDVHNAFLHGDL EEV
Sbjct: 330  RLVVMGNHQKEGVDFKETFAPVAKLTTVRTILAVAAAKDWEVHQMDVHNAFLHGDLEEEV 389

Query: 514  YMS-PK*FS*WSLPDTARLVLKTNSLLASIRV-YSVLFGLL--VIYSSAAHCISLY---- 359
            YM  P  F         RL      L  + R  +S L   L  + ++ +    SL+    
Sbjct: 390  YMRLPPGFKCSDPSKVCRLRKSLYGLKQAPRCWFSKLSTALRNIGFTQSYEDYSLFSLKN 449

Query: 358  -------FNLC**LIDF*NDSAYIAHLKSYLSSCFHMKDLGTLKYFLSIEVARSPSGFYL 200
                         LI   N+   I   KS L  CFHMKDLG LKYFL +EV+R P GF L
Sbjct: 450  GDTIIHVLVYVDDLIVAGNNLDAIDRFKSQLHKCFHMKDLGKLKYFLGLEVSRGPDGFCL 509

Query: 199  SQHKYALELISEVCLLGAKPASTPIEPNHHLATTFDDFLLQDDRYRRLICKLIYLSITRP 20
            SQ KYAL+++ E  LLG KP++ PI  NH LA+         ++YRRL+ + IYL+ITRP
Sbjct: 510  SQRKYALDIVKETGLLGCKPSAVPIALNHKLASITGPVFTNPEQYRRLVGRFIYLTITRP 569

Query: 19   DLAYTV 2
            DL+Y V
Sbjct: 570  DLSYAV 575


>emb|CAN76645.1| hypothetical protein VITISV_004685 [Vitis vinifera]
          Length = 1196

 Score =  190 bits (482), Expect = 4e-46
 Identities = 115/246 (46%), Positives = 142/246 (57%), Gaps = 15/246 (6%)
 Frame = -1

Query: 694  RLVFIGNTQREGKDYTETFAPIAKIVIVRTLLSITAARRWEVHQMDVHNAFLHGDLTEEV 515
            RLV +GN Q    DY ETF+PIAK+  VR  L+I A++ WE+HQMDVHNAFLHGDL EEV
Sbjct: 859  RLVVLGNHQEADIDYHETFSPIAKMTTVRAFLAIAASKNWELHQMDVHNAFLHGDLEEEV 918

Query: 514  YMS-PK*FS*WSLPDTARLVLKTNSLLASIRVYSVL-------FGLLVIYSSAAHCISLY 359
            YM  P  F         RL      L  + R +          +G L  YS  +      
Sbjct: 919  YMKLPPGFESXDPNLVCRLRKSLYGLKQAPRCWFAKLVTXLKGYGFLQSYSDYSLFTYTK 978

Query: 358  FNL-------C**LIDF*NDSAYIAHLKSYLSSCFHMKDLGTLKYFLSIEVARSPSGFYL 200
             N+          LI   NDSA +   K+YLS CF MK+LG LKYFL IEVARS +G +L
Sbjct: 979  GNVQINVLVYVDDLIISGNDSAALKTFKAYLSDCFKMKBLGVLKYFLGIEVARSSAGLFL 1038

Query: 199  SQHKYALELISEVCLLGAKPASTPIEPNHHLATTFDDFLLQDDRYRRLICKLIYLSITRP 20
             Q KY L+++SE  LLGAKP    IE NH L     + L   + YRRL+ +LIYL++TRP
Sbjct: 1039 CQXKYTLDIVSEXGLLGAKPCGFXIEQNHRLGLANGELLSNPESYRRLVGRLIYLAVTRP 1098

Query: 19   DLAYTV 2
            DLAY+V
Sbjct: 1099 DLAYSV 1104


>gb|AAD19784.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1501

 Score =  185 bits (469), Expect = 1e-44
 Identities = 115/246 (46%), Positives = 145/246 (58%), Gaps = 15/246 (6%)
 Frame = -1

Query: 694  RLVFIGNTQREGKDYTETFAPIAKIVIVRTLLSITAARRWEVHQMDVHNAFLHGDLTEEV 515
            RLV  GN Q EG+DY ETFAP+ ++  VRTLL   AA +WEV+QMDVHNAFLHGDL EEV
Sbjct: 1055 RLVVQGNKQVEGEDYKETFAPVVRMTTVRTLLRNVAANQWEVYQMDVHNAFLHGDLEEEV 1114

Query: 514  YMSPK*FS*WSLPD-TARLVLKTNSLLASIRVY------SVL-FGLLVIYSSAAHCISLY 359
            YM        S PD   RL      L  + R +      S+L FG +  Y   +      
Sbjct: 1115 YMKLPPGFRHSHPDKVCRLRKSLYGLKQAPRCWFKKLSDSLLRFGFVQSYEDYSLFSYTR 1174

Query: 358  FNL-------C**LIDF*NDSAYIAHLKSYLSSCFHMKDLGTLKYFLSIEVARSPSGFYL 200
             N+          L+   ND   +   K YLS CF MKDLG LKYFL IEV+R P G +L
Sbjct: 1175 NNIELRVLIYVDDLLICGNDGYMLQKFKDYLSRCFSMKDLGKLKYFLGIEVSRGPEGIFL 1234

Query: 199  SQHKYALELISEVCLLGAKPASTPIEPNHHLATTFDDFLLQDDRYRRLICKLIYLSITRP 20
            SQ KYAL++I++   LG++PA TP+E NHHLA+     L     YRRL+ +L+YL  TRP
Sbjct: 1235 SQRKYALDVIADSGNLGSRPAHTPLEQNHHLASDDGPLLSDPKPYRRLVGRLLYLLHTRP 1294

Query: 19   DLAYTV 2
            +L+Y+V
Sbjct: 1295 ELSYSV 1300


>gb|AAD23883.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1156

 Score =  181 bits (458), Expect = 3e-43
 Identities = 113/246 (45%), Positives = 143/246 (58%), Gaps = 15/246 (6%)
 Frame = -1

Query: 694  RLVFIGNTQREGKDYTETFAPIAKIVIVRTLLSITAARRWEVHQMDVHNAFLHGDLTEEV 515
            RLV  GN Q EG+DY ETFAP+ K+  VRTLL + AA +WEV+QMDV+NAFLHGDL EEV
Sbjct: 702  RLVVQGNKQVEGEDYNETFAPVVKMTTVRTLLRLVAANQWEVYQMDVNNAFLHGDLDEEV 761

Query: 514  YMSPK*FS*WSLPD-TARLVLKTNSLLASIRVYS-------VLFGLLV------IYSSAA 377
            YM        S PD   RL      L  + R +        + FG +        +S   
Sbjct: 762  YMKLPPGFRHSHPDKVCRLRKSLYGLKQAPRCWFKKLSDALLRFGFVQGHEDYSFFSYTR 821

Query: 376  HCISLYFNL-C**LIDF*NDSAYIAHLKSYLSSCFHMKDLGTLKYFLSIEVARSPSGFYL 200
            + I L   +    L+   ND   +   K YL  CF MKDLG LKYFL IEV+R   G +L
Sbjct: 822  NGIELRVLVYVDDLLICGNDGYMLQKFKEYLGRCFSMKDLGKLKYFLGIEVSRGSEGIFL 881

Query: 199  SQHKYALELISEVCLLGAKPASTPIEPNHHLATTFDDFLLQDDRYRRLICKLIYLSITRP 20
            SQ KYAL++I++   LG +PA TP+E NHHLAT     L     YRRL+ +L+YL  TRP
Sbjct: 882  SQRKYALDIITDSGNLGCRPALTPLEQNHHLATDDGPLLADAKPYRRLVGRLLYLLHTRP 941

Query: 19   DLAYTV 2
            +L+Y+V
Sbjct: 942  ELSYSV 947


>emb|CAN81016.1| hypothetical protein VITISV_025518 [Vitis vinifera]
          Length = 1461

 Score =  179 bits (453), Expect = 1e-42
 Identities = 112/250 (44%), Positives = 142/250 (56%), Gaps = 19/250 (7%)
 Frame = -1

Query: 694  RLVFIGNTQREGKDYTETFAPIAKIVIVRTLLSITAARRWEVHQMDVHNAFLHGDLTEEV 515
            RLV  G TQREG DY ETF+P+AK+  VR LL+I A R W +HQMDV NAFLHGDL EEV
Sbjct: 1014 RLVAKGFTQREGIDYKETFSPVAKLTTVRCLLAIAAVRHWSLHQMDVQNAFLHGDLLEEV 1073

Query: 514  YMS-PK*F-S*WSLPDTARLVLKTNSLLASIRVYSVLFGLLV-----------------I 392
            YM  P  F      P   RL      L  + R +   F   +                 I
Sbjct: 1074 YMQLPLGFRQQGETPMVCRLNKSLYGLKQASRSWFRKFSATIQQDGFHQSRADYSLFTKI 1133

Query: 391  YSSAAHCISLYFNLC**LIDF*NDSAYIAHLKSYLSSCFHMKDLGTLKYFLSIEVARSPS 212
              ++   + +Y +    +I   ND   IA LK  L + F +KDLG L+YFL IEVARS  
Sbjct: 1134 SGNSFTAVLIYVDD---MIITGNDENVIAALKESLHTKFRIKDLGQLRYFLGIEVARSTD 1190

Query: 211  GFYLSQHKYALELISEVCLLGAKPASTPIEPNHHLATTFDDFLLQDDRYRRLICKLIYLS 32
            G  +SQ KY L+++ E  LLGAKP STP+E N+ L  T  D L     YRRL+ +LIYL+
Sbjct: 1191 GISISQRKYTLDILDEAGLLGAKPLSTPMEENNKLLPTVGDLLKNPSTYRRLVGQLIYLT 1250

Query: 31   ITRPDLAYTV 2
            ITRP+++Y+V
Sbjct: 1251 ITRPEISYSV 1260


>gb|AAC98469.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1102

 Score =  174 bits (442), Expect = 2e-41
 Identities = 102/234 (43%), Positives = 139/234 (59%), Gaps = 3/234 (1%)
 Frame = -1

Query: 694  RLVFIGNTQREGKDYTETFAPIAKIVIVRTLLSITAARRWEVHQMDVHNAFLHGDLTEEV 515
            RLV +GN Q+EG D+ ETFAP+AK+  VR LL++ AA+ W+V QMDVHNAFLHGDL +E 
Sbjct: 682  RLVVMGNHQKEGIDFKETFAPVAKMTTVRLLLAVAAAKDWDVFQMDVHNAFLHGDLEQE- 740

Query: 514  YMSPK*FS*WSLPDTARLVLKTNSLLASIRVYSVLFGLLVIYSSAAHCISLYFNLC**LI 335
                   S + L    R      S       ++  +    ++S       ++F +   + 
Sbjct: 741  -------SLYGLKQAPRCWFAKLSTALRKLGFTQSYEDYSLFSLNRDGTVIHFLVY--VD 791

Query: 334  DF*---NDSAYIAHLKSYLSSCFHMKDLGTLKYFLSIEVARSPSGFYLSQHKYALELISE 164
            DF    N+   I H K +L  CFHMKDLG LKYFL +EV+R   GF LSQ KYAL++I+E
Sbjct: 792  DFIIVGNNLKAIDHFKEHLHKCFHMKDLGKLKYFLGLEVSRGADGFCLSQQKYALDIINE 851

Query: 163  VCLLGAKPASTPIEPNHHLATTFDDFLLQDDRYRRLICKLIYLSITRPDLAYTV 2
              LLG KP++ P+E +H L +          +YRRL+ + IYL+ITRPDL+Y V
Sbjct: 852  AGLLGYKPSAVPMELHHKLGSISSPVFDNPAQYRRLVDRFIYLTITRPDLSYAV 905


>emb|CAN82073.1| hypothetical protein VITISV_036538 [Vitis vinifera]
          Length = 1157

 Score =  174 bits (440), Expect = 3e-41
 Identities = 115/253 (45%), Positives = 143/253 (56%), Gaps = 22/253 (8%)
 Frame = -1

Query: 694  RLVFIGNTQREGKDYTETFAPIAKIVIVRTLLSITAARRWEVHQMDVHNAFLHGDLTEEV 515
            RLV +GN + EG DY ETFAP AK+V V+T L++ A + WE+HQMDVHNAFLHG+L EEV
Sbjct: 756  RLVILGNKKVEGIDYNETFAPTAKMVTVQTFLAVVAMKGWELHQMDVHNAFLHGELDEEV 815

Query: 514  YM--SPK*FS*WSLPDTARLVLKTNSLLASIRVYSVLFGLLVI-------------YS-- 386
            YM  SP     ++ P   ++     SL    +     F  LV              YS  
Sbjct: 816  YMQMSPG----FASPTPGKVCGLRKSLYGLQQAPKCWFAKLVAALTSYGFKQSYLDYSLF 871

Query: 385  --SAAHCISLYFNLC**LIDF*NDSAYIAHLKSYLSSCFHMKDLGTLKYFLSIEVARSPS 212
               A H           LI   ND   +   K YLS CFH+KDLG LK FL IEVAR+ +
Sbjct: 872  TYEAQHIQLNVLVYVDDLIISRNDGTTVQQFKDYLSRCFHIKDLGKLK-FLGIEVARNDT 930

Query: 211  ---GFYLSQHKYALELISEVCLLGAKPASTPIEPNHHLATTFDDFLLQDDRYRRLICKLI 41
               G +L Q KY L++ISEV LLGAK A TP+E NH LA   +  L    +YRRL+  LI
Sbjct: 931  NSDGIFLCQRKYTLDIISEVGLLGAKSAGTPLEQNHKLALVANFDLRDPRQYRRLVGWLI 990

Query: 40   YLSITRPDLAYTV 2
            YL IT+P+L+Y V
Sbjct: 991  YLMITQPELSYCV 1003