BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Catharanthus22_contig00028211
         (1081 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis]        159   2e-58
ref|XP_006651032.1| PREDICTED: uncharacterized protein LOC102707...   176   5e-58
emb|CAD41912.2| OSJNBa0033G05.13 [Oryza sativa Japonica Group]        171   5e-58
gb|AAD19773.1| putative retroelement pol polyprotein [Arabidopsi...   156   2e-57
emb|CAJ86151.1| H0413E07.4 [Oryza sativa Indica Group]                167   2e-57
emb|CAJ86192.1| H0306F03.15 [Oryza sativa Indica Group]               167   2e-57
gb|AAP54315.2| retrotransposon protein, putative, Ty1-copia subc...   165   4e-57
gb|AAM91886.1| putative polyprotein [Oryza sativa Japonica Group]     165   4e-57
ref|NP_001172143.1| Os01g0116166 [Oryza sativa Japonica Group] g...   169   3e-56
gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]     169   6e-56
gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-...   167   7e-56
ref|NP_001065797.2| Os11g0157000 [Oryza sativa Japonica Group] g...   167   7e-56
emb|CAN61630.1| hypothetical protein VITISV_003191 [Vitis vinifera]   157   1e-53
emb|CAN61272.1| hypothetical protein VITISV_039063 [Vitis vinifera]   148   7e-53
emb|CAD40363.2| OSJNBa0093P23.9 [Oryza sativa Japonica Group]         167   7e-53
emb|CAH66022.1| OSIGBa0105O19.1 [Oryza sativa Indica Group]           167   7e-53
gb|ABA97637.1| retrotransposon protein, putative, Ty1-copia subc...   154   7e-51
gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-...   154   2e-50
gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subc...   153   2e-50
gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subc...   153   3e-50

>emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis]
          Length = 1334

 Score =  159 bits (402), Expect(3) = 2e-58
 Identities = 86/229 (37%), Positives = 134/229 (58%), Gaps = 3/229 (1%)
 Frame = +2

Query: 176 SSSNVSDE*IHDSGCTFHITPNKHWFSDFETLDYGKVFLGNNEVCDIKLIGNLFIKMHDG 355
           S+SN   + + DSGC+FH+ P K  F  +E +D G+V +GNN VC+I  +G  F K    
Sbjct: 284 SNSNTKGQWVIDSGCSFHLCPEKTLFYKYEAVDGGRVLMGNNNVCNI--VGIWFCKRSRC 341

Query: 356 MS---RKLTDVRYVPNLRRNLISLGVFDTNSYSCKF*NGIWRVCKGSLVILKGFKKNGLH 526
           +    R L +VR+ P L+RNLISLG+ D+  Y  K   G   V KG+ +++KG  +NGL+
Sbjct: 342 LMELLRSLHEVRHAPRLKRNLISLGMLDSLGYFFKSRIGGLEVRKGTEIVMKGVNENGLY 401

Query: 527 TLLSKTICESSTLFTKTVSEKSML*HRRTGHINEKGLQYLNK*NLLNGEKIDYLDFYDHY 706
            L   ++     +   +  +++ L H R GH++ KGLQ L+K  LL G++I  L+F ++ 
Sbjct: 402 VLQGSSVPVQEGVSAVSEEDRTKLWHLRLGHMSIKGLQELSKQGLLGGDRIQQLEFCENC 461

Query: 707 VLGKQYKLSFSTGTHKPTAVLDYMHCDL*GLKKEPTYGGNVYFLSIVED 853
           + GK ++  F+ G H    VLDY H D  G  + P+  G  YF+S+++D
Sbjct: 462 IFGKSHRSKFNKGEHMSKQVLDYAHIDHWGPAQVPSLSGGRYFMSLIDD 510



 Score = 84.7 bits (208), Expect(3) = 2e-58
 Identities = 38/71 (53%), Positives = 45/71 (63%)
 Frame = +1

Query: 868  IWIFLLKAKGQTFEKFIEWKRFAENQTGNKLKVIRMHNRLEFCKKKFNDLCASHGIMHHK 1047
            +WI++LK K Q  EKF  WK   ENQ+  KLK +R  N LEFC K F + C  HGI  HK
Sbjct: 515  VWIYILKIKDQALEKFKVWKSLVENQSDFKLKCLRTDNGLEFCSKVFEEYCQKHGIKRHK 574

Query: 1048 TVRHNSQQNGV 1080
            TVR   QQNG+
Sbjct: 575  TVRFTPQQNGL 585



 Score = 31.2 bits (69), Expect(3) = 2e-58
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +3

Query: 3   CFYCDKDDHMKNKCF*WIRDEKQRKKGNESI 95
           CFYC K+ H    CF   + E Q K G+ ++
Sbjct: 236 CFYCRKEGHYIRDCFEKKKKESQEKSGDAAV 266


>ref|XP_006651032.1| PREDICTED: uncharacterized protein LOC102707106 [Oryza brachyantha]
          Length = 1773

 Score =  176 bits (447), Expect(2) = 5e-58
 Identities = 93/222 (41%), Positives = 138/222 (62%), Gaps = 1/222 (0%)
 Frame = +2

Query: 191 SDE*IHDSGCTFHITPNKHWFSDFETLDYGKVFLGNNEVCDIKLIGNLFIKMHDGMSRKL 370
           SDE + D+GCT+H+ PN+ WF+ +E +  G V +G+N  C +  +G + IKM DG  R L
Sbjct: 239 SDEWLLDTGCTYHMCPNRDWFTTYEPVQGGNVLMGDNTPCKVAGVGTIQIKMFDGCIRTL 298

Query: 371 TDVRYVPNLRRNLISLGVFDTNSYSCKF*NGIWRVCKGSLVILKGFKKNG-LHTLLSKTI 547
           +DVR++P+L+RNLISL   D   Y     +GI +V KGSLV++K   KN  L+ L   TI
Sbjct: 299 SDVRHIPSLKRNLISLSTLDRKGYRYSGGDGILKVTKGSLVVMKADIKNADLYHLQGTTI 358

Query: 548 CESSTLFTKTVSEKSML*HRRTGHINEKGLQYLNK*NLLNGEKIDYLDFYDHYVLGKQYK 727
             +    T ++S  S L H R GH++E GL  L+K  LL+G+ I  L F +H + GK  +
Sbjct: 359 VGNVAAVTDSLS-NSDLWHMRLGHMSEIGLAELSKRGLLDGQNIGKLKFCEHCIFGKHKR 417

Query: 728 LSFSTGTHKPTAVLDYMHCDL*GLKKEPTYGGNVYFLSIVED 853
           + F+T TH    +LDY+H DL G  ++ ++GG  Y ++IV+D
Sbjct: 418 VKFTTSTHTTEGILDYVHSDLWGPARKRSFGGARYMMTIVDD 459



 Score = 76.3 bits (186), Expect(2) = 5e-58
 Identities = 34/71 (47%), Positives = 43/71 (60%)
 Frame = +1

Query: 868  IWIFLLKAKGQTFEKFIEWKRFAENQTGNKLKVIRMHNRLEFCKKKFNDLCASHGIMHHK 1047
            +W + LK K + F  F EWK   E QT  K+KV+R  N +EFC ++F   C S GI+ H 
Sbjct: 464  VWPYFLKHKFEAFLVFKEWKTMVERQTERKVKVLRTDNGMEFCSRQFKSYCRSEGIVRHY 523

Query: 1048 TVRHNSQQNGV 1080
            TV H  QQNGV
Sbjct: 524  TVSHTPQQNGV 534


>emb|CAD41912.2| OSJNBa0033G05.13 [Oryza sativa Japonica Group]
          Length = 1181

 Score =  171 bits (432), Expect(3) = 5e-58
 Identities = 89/231 (38%), Positives = 140/231 (60%), Gaps = 3/231 (1%)
 Frame = +2

Query: 170 FPSSSNVSDE*IHDSGCTFHITPNKHWFSDFETLDYGKVFLGNNEVCDIKLIGNLFIKMH 349
           +   +  SD+ I D+ CT+H+ PN+ WF+ +E +  G V +G++  C++  IG + IKM 
Sbjct: 290 YAGCAQTSDQWILDTACTYHMCPNRDWFATYEVVQGGTVLMGDDTPCEVAGIGTVQIKMF 349

Query: 350 DGMSRKLTDVRYVPNLRRNLISLGVFDTNSYSCKF*NGIWRVCKGSLVILK-GFKKNGLH 526
           DG  R L+DVR++PNL+R+LISL   D   Y     +GI +V KGSLV++K   K   L+
Sbjct: 350 DGCIRTLSDVRHIPNLKRSLISLCTLDRKGYKYSGGDGILKVTKGSLVVMKASIKSANLY 409

Query: 527 TLLSKTICESSTLFTKTV--SEKSML*HRRTGHINEKGLQYLNK*NLLNGEKIDYLDFYD 700
            L   TI  +    + ++  S+ + L H R GH++E GL  L+K  LL+G+ I  L F +
Sbjct: 410 HLQGTTILGNVATVSDSLSNSDATNLWHMRLGHMSEIGLAELSKRGLLDGQSISKLKFCE 469

Query: 701 HYVLGKQYKLSFSTGTHKPTAVLDYMHCDL*GLKKEPTYGGNVYFLSIVED 853
           H + GK  ++ F+T TH    +LDY+H DL G  ++ ++GG  Y ++IV+D
Sbjct: 470 HCIFGKHKRVKFNTSTHTTEGILDYVHSDLWGPARKTSFGGARYMMTIVDD 520



 Score = 77.4 bits (189), Expect(3) = 5e-58
 Identities = 35/71 (49%), Positives = 42/71 (59%)
 Frame = +1

Query: 868  IWIFLLKAKGQTFEKFIEWKRFAENQTGNKLKVIRMHNRLEFCKKKFNDLCASHGIMHHK 1047
            +W + LK K Q F  F EWK   E QT  K+K++R  N +EFC K F   C S GI+ H 
Sbjct: 525  VWPYFLKHKYQAFNVFKEWKTMVERQTERKVKILRTDNGMEFCSKIFKSYCKSEGIVRHY 584

Query: 1048 TVRHNSQQNGV 1080
            TV H  QQNGV
Sbjct: 585  TVPHTPQQNGV 595



 Score = 25.4 bits (54), Expect(3) = 5e-58
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +3

Query: 3   CFYCDKDDHMKNKCF*WIRDEKQRKKG 83
           C YC +D H  +KC  W   +K ++ G
Sbjct: 236 CKYCKRDGHDISKC--WKLQDKDKRTG 260


>gb|AAD19773.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1335

 Score =  156 bits (395), Expect(3) = 2e-57
 Identities = 87/226 (38%), Positives = 134/226 (59%), Gaps = 1/226 (0%)
 Frame = +2

Query: 179 SSNVSDE*IHDSGCTFHITPNKHWFSDFETLDYGKVFLGNNEVCDIKLIGNLFIKMHDGM 358
           + ++++E + D+GC+FH+TP K WF DF+ L  G V +GN+    +K IG++ I+  DG 
Sbjct: 278 TDSIANEWVLDTGCSFHMTPRKDWFKDFKELSSGYVKMGNDTYSPVKGIGSIKIRNSDGS 337

Query: 359 SRKLTDVRYVPNLRRNLISLGVFDTNSYSCKF*NGIWRVCKGSLVILKGFKKNGLHTLLS 538
              LTDVRY+PN+ RNLISLG  +      K  +GI ++ KG   ILKG K++ L+ +L 
Sbjct: 338 QVILTDVRYMPNMTRNLISLGTLEDRGCWFKSQDGILKIVKGCSTILKGQKRDTLY-ILD 396

Query: 539 KTICESSTLFTKTVSEKSML*HRRTGHINEKGLQYLNK*NLLNGEKIDYLDFYDHYVLGK 718
               E  +  +  V +++ L H R GH+++KG++ L K   L  E I  L+F +  V GK
Sbjct: 397 GVTEEGESHSSAEVKDETALWHSRLGHMSQKGMEILVKKGCLRREVIKELEFCEDCVYGK 456

Query: 719 QYKLSFSTGTHKPTAVLDYMHCDL*GLKKEP-TYGGNVYFLSIVED 853
           Q+++SF+   H     L Y+H DL G    P + G + YF+S V+D
Sbjct: 457 QHRVSFAPAQHVTKEKLAYVHSDLWGSPHNPASLGNSQYFISFVDD 502



 Score = 80.9 bits (198), Expect(3) = 2e-57
 Identities = 32/71 (45%), Positives = 45/71 (63%)
 Frame = +1

Query: 868  IWIFLLKAKGQTFEKFIEWKRFAENQTGNKLKVIRMHNRLEFCKKKFNDLCASHGIMHHK 1047
            +WI+ L+ K + FEKF+EWK+  ENQ+  K+K +R  N LE+C   F   C   GI+ HK
Sbjct: 507  VWIYFLRKKDEAFEKFVEWKKMVENQSDRKVKKLRTDNGLEYCNHYFEKFCKEEGIVRHK 566

Query: 1048 TVRHNSQQNGV 1080
            T  +  QQNG+
Sbjct: 567  TCAYTPQQNGI 577



 Score = 34.3 bits (77), Expect(3) = 2e-57
 Identities = 10/30 (33%), Positives = 20/30 (66%)
 Frame = +3

Query: 3   CFYCDKDDHMKNKCF*WIRDEKQRKKGNES 92
           C+ C K+ H K +C+ WI   K +++G+++
Sbjct: 221 CWICGKEGHFKKQCYKWIERNKSKQQGSDN 250


>emb|CAJ86151.1| H0413E07.4 [Oryza sativa Indica Group]
          Length = 1205

 Score =  167 bits (423), Expect(3) = 2e-57
 Identities = 88/231 (38%), Positives = 138/231 (59%), Gaps = 3/231 (1%)
 Frame = +2

Query: 170 FPSSSNVSDE*IHDSGCTFHITPNKHWFSDFETLDYGKVFLGNNEVCDIKLIGNLFIKMH 349
           +   +  SD+ I D+ CT+H+ PN+ WF+ +E +  G V +G++  C++  IG + IKM 
Sbjct: 275 YAGCAQTSDQWILDTACTYHMCPNRDWFATYEVVQGGTVLMGDDTPCEVAGIGTVQIKMF 334

Query: 350 DGMSRKLTDVRYVPNLRRNLISLGVFDTNSYSCKF*NGIWRVCKGSLVILKG-FKKNGLH 526
           DG  R L+DVR++PNL+R+LISL   D   Y     +GI +V KGSLV++K   K   L+
Sbjct: 335 DGCIRTLSDVRHIPNLKRSLISLCTLDCKGYKYSGGDGILKVTKGSLVVMKADIKSANLY 394

Query: 527 TLLSKTICESSTLFTKTV--SEKSML*HRRTGHINEKGLQYLNK*NLLNGEKIDYLDFYD 700
            L   TI  +    + ++  S+ + L H R GH++E GL  L+   LL+G+ I  L F +
Sbjct: 395 HLQGTTILGNVATVSDSLSNSDATNLWHMRLGHMSEIGLAELSMRGLLDGQSIGKLKFCE 454

Query: 701 HYVLGKQYKLSFSTGTHKPTAVLDYMHCDL*GLKKEPTYGGNVYFLSIVED 853
           H + GK  ++ F+T TH    +LDY+H DL G  ++ ++GG  Y ++IV D
Sbjct: 455 HCIFGKHKRVKFNTSTHTTEGILDYVHSDLWGPARKTSFGGARYMMTIVND 505



 Score = 79.0 bits (193), Expect(3) = 2e-57
 Identities = 36/71 (50%), Positives = 42/71 (59%)
 Frame = +1

Query: 868  IWIFLLKAKGQTFEKFIEWKRFAENQTGNKLKVIRMHNRLEFCKKKFNDLCASHGIMHHK 1047
            +W + LK K Q F  F EWK   E QT  K+K++R  N +EFC K F   C S GIM H 
Sbjct: 510  VWPYFLKHKYQAFNVFKEWKTMVERQTERKVKILRTDNGMEFCSKIFKSYCKSEGIMRHY 569

Query: 1048 TVRHNSQQNGV 1080
            TV H  QQNGV
Sbjct: 570  TVPHTPQQNGV 580



 Score = 25.4 bits (54), Expect(3) = 2e-57
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +3

Query: 3   CFYCDKDDHMKNKCF*WIRDEKQRKKG 83
           C YC +D H  +KC  W   +K ++ G
Sbjct: 221 CKYCKRDGHDISKC--WKLQDKDKRTG 245


>emb|CAJ86192.1| H0306F03.15 [Oryza sativa Indica Group]
          Length = 1037

 Score =  167 bits (423), Expect(3) = 2e-57
 Identities = 88/231 (38%), Positives = 138/231 (59%), Gaps = 3/231 (1%)
 Frame = +2

Query: 170 FPSSSNVSDE*IHDSGCTFHITPNKHWFSDFETLDYGKVFLGNNEVCDIKLIGNLFIKMH 349
           +   +  SD+ I D+ CT+H+ PN+ WF+ +E +  G V +G++  C++  IG + IKM 
Sbjct: 107 YAGCAQTSDQWILDTACTYHMCPNRDWFATYEVVQGGTVLMGDDTPCEVAGIGTVQIKMF 166

Query: 350 DGMSRKLTDVRYVPNLRRNLISLGVFDTNSYSCKF*NGIWRVCKGSLVILKG-FKKNGLH 526
           DG  R L+DVR++PNL+R+LISL   D   Y     +GI +V KGSLV++K   K   L+
Sbjct: 167 DGCIRTLSDVRHIPNLKRSLISLCTLDCKGYKYSGGDGILKVTKGSLVVMKADIKSANLY 226

Query: 527 TLLSKTICESSTLFTKTV--SEKSML*HRRTGHINEKGLQYLNK*NLLNGEKIDYLDFYD 700
            L   TI  +    + ++  S+ + L H R GH++E GL  L+   LL+G+ I  L F +
Sbjct: 227 HLQGTTILGNVATVSDSLSNSDATNLWHMRLGHMSEIGLAELSMRGLLDGQSIGKLKFCE 286

Query: 701 HYVLGKQYKLSFSTGTHKPTAVLDYMHCDL*GLKKEPTYGGNVYFLSIVED 853
           H + GK  ++ F+T TH    +LDY+H DL G  ++ ++GG  Y ++IV D
Sbjct: 287 HCIFGKHKRVKFNTSTHTTEGILDYVHSDLWGPARKTSFGGARYMMTIVND 337



 Score = 79.0 bits (193), Expect(3) = 2e-57
 Identities = 36/71 (50%), Positives = 42/71 (59%)
 Frame = +1

Query: 868  IWIFLLKAKGQTFEKFIEWKRFAENQTGNKLKVIRMHNRLEFCKKKFNDLCASHGIMHHK 1047
            +W + LK K Q F  F EWK   E QT  K+K++R  N +EFC K F   C S GIM H 
Sbjct: 342  VWPYFLKHKYQAFNVFKEWKTMVERQTERKVKILRTDNGMEFCSKIFKSYCKSEGIMRHY 401

Query: 1048 TVRHNSQQNGV 1080
            TV H  QQNGV
Sbjct: 402  TVPHTPQQNGV 412



 Score = 25.4 bits (54), Expect(3) = 2e-57
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +3

Query: 3   CFYCDKDDHMKNKCF*WIRDEKQRKKG 83
           C YC +D H  +KC  W   +K ++ G
Sbjct: 53  CKYCKRDGHDISKC--WKLQDKDKRTG 77


>gb|AAP54315.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1312

 Score =  165 bits (418), Expect(3) = 4e-57
 Identities = 89/231 (38%), Positives = 138/231 (59%), Gaps = 3/231 (1%)
 Frame = +2

Query: 170  FPSSSNVSDE*IHDSGCTFHITPNKHWFSDFETLDYGKVFLGNNEVCDIKLIGNLFIKMH 349
            +   +  SD+ I D+  T+H+ PN+ WF+ +E L  G V +G++  C++  IG + IKM 
Sbjct: 325  YAGCAQTSDQWILDTAWTYHMCPNRDWFATYEALQGGTVLMGDDTPCEVAGIGTVQIKMF 384

Query: 350  DGMSRKLTDVRYVPNLRRNLISLGVFDTNSYSCKF*NGIWRVCKGSLVILKG-FKKNGLH 526
            DG  R L+DVR++PNL+R+LISL   D   Y     +GI +V KGSLV++K   K   L+
Sbjct: 385  DGYIRTLSDVRHIPNLKRSLISLCTLDRKGYKYSGGDGILKVTKGSLVVMKADIKSANLY 444

Query: 527  TLLSKTICESSTLFTKTV--SEKSML*HRRTGHINEKGLQYLNK*NLLNGEKIDYLDFYD 700
             L   TI  +    + ++  S+ + L H R GH++E GL  L+K  LL+G+ I  L F +
Sbjct: 445  HLRGTTILGNVAAVSDSLSNSDATNLWHMRLGHMSEIGLAELSKRELLDGQSIGKLKFCE 504

Query: 701  HYVLGKQYKLSFSTGTHKPTAVLDYMHCDL*GLKKEPTYGGNVYFLSIVED 853
            H + GK  ++ F+T TH    +LDY+H DL G   + ++GG  Y ++IV+D
Sbjct: 505  HCIFGKHKRVKFNTSTHTTEGILDYVHSDLWGPACKTSFGGARYMMTIVDD 555



 Score = 81.3 bits (199), Expect(3) = 4e-57
 Identities = 36/71 (50%), Positives = 44/71 (61%)
 Frame = +1

Query: 868  IWIFLLKAKGQTFEKFIEWKRFAENQTGNKLKVIRMHNRLEFCKKKFNDLCASHGIMHHK 1047
            +W + LK K Q F+ F EWK   E QT  K+K++R  N +EFC K F   C S GI+HH 
Sbjct: 560  VWPYFLKHKYQAFDVFKEWKTMVERQTEKKVKILRTDNGMEFCSKIFKSYCKSEGIVHHY 619

Query: 1048 TVRHNSQQNGV 1080
            TV H  QQNGV
Sbjct: 620  TVPHTPQQNGV 630



 Score = 23.9 bits (50), Expect(3) = 4e-57
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +3

Query: 3   CFYCDKDDHMKNKCF*WIRDEKQRKKG 83
           C YC +D H  ++C  W   +K ++ G
Sbjct: 271 CKYCKRDGHDISEC--WKLQDKDKRTG 295


>gb|AAM91886.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1280

 Score =  165 bits (418), Expect(3) = 4e-57
 Identities = 89/231 (38%), Positives = 138/231 (59%), Gaps = 3/231 (1%)
 Frame = +2

Query: 170  FPSSSNVSDE*IHDSGCTFHITPNKHWFSDFETLDYGKVFLGNNEVCDIKLIGNLFIKMH 349
            +   +  SD+ I D+  T+H+ PN+ WF+ +E L  G V +G++  C++  IG + IKM 
Sbjct: 325  YAGCAQTSDQWILDTAWTYHMCPNRDWFATYEALQGGTVLMGDDTPCEVAGIGTVQIKMF 384

Query: 350  DGMSRKLTDVRYVPNLRRNLISLGVFDTNSYSCKF*NGIWRVCKGSLVILKG-FKKNGLH 526
            DG  R L+DVR++PNL+R+LISL   D   Y     +GI +V KGSLV++K   K   L+
Sbjct: 385  DGYIRTLSDVRHIPNLKRSLISLCTLDRKGYKYSGGDGILKVTKGSLVVMKADIKSANLY 444

Query: 527  TLLSKTICESSTLFTKTV--SEKSML*HRRTGHINEKGLQYLNK*NLLNGEKIDYLDFYD 700
             L   TI  +    + ++  S+ + L H R GH++E GL  L+K  LL+G+ I  L F +
Sbjct: 445  HLRGTTILGNVAAVSDSLSNSDATNLWHMRLGHMSEIGLAELSKRELLDGQSIGKLKFCE 504

Query: 701  HYVLGKQYKLSFSTGTHKPTAVLDYMHCDL*GLKKEPTYGGNVYFLSIVED 853
            H + GK  ++ F+T TH    +LDY+H DL G   + ++GG  Y ++IV+D
Sbjct: 505  HCIFGKHKRVKFNTSTHTTEGILDYVHSDLWGPACKTSFGGARYMMTIVDD 555



 Score = 81.3 bits (199), Expect(3) = 4e-57
 Identities = 36/71 (50%), Positives = 44/71 (61%)
 Frame = +1

Query: 868  IWIFLLKAKGQTFEKFIEWKRFAENQTGNKLKVIRMHNRLEFCKKKFNDLCASHGIMHHK 1047
            +W + LK K Q F+ F EWK   E QT  K+K++R  N +EFC K F   C S GI+HH 
Sbjct: 560  VWPYFLKHKYQAFDVFKEWKTMVERQTEKKVKILRTDNGMEFCSKIFKSYCKSEGIVHHY 619

Query: 1048 TVRHNSQQNGV 1080
            TV H  QQNGV
Sbjct: 620  TVPHTPQQNGV 630



 Score = 23.9 bits (50), Expect(3) = 4e-57
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +3

Query: 3   CFYCDKDDHMKNKCF*WIRDEKQRKKG 83
           C YC +D H  ++C  W   +K ++ G
Sbjct: 271 CKYCKRDGHDISEC--WKLQDKDKRTG 295


>ref|NP_001172143.1| Os01g0116166 [Oryza sativa Japonica Group]
           gi|255672802|dbj|BAH90873.1| Os01g0116166 [Oryza sativa
           Japonica Group]
          Length = 778

 Score =  169 bits (428), Expect(2) = 3e-56
 Identities = 89/227 (39%), Positives = 138/227 (60%), Gaps = 3/227 (1%)
 Frame = +2

Query: 182 SNVSDE*IHDSGCTFHITPNKHWFSDFETLDYGKVFLGNNEVCDIKLIGNLFIKMHDGMS 361
           +  SD+ I D+ CT+H+ PN+ WF+ +ET+  G V +G++  C++  IG + IKM DG  
Sbjct: 260 AQTSDQWILDTACTYHMCPNRDWFATYETVQGGTVLMGDDTPCEVAGIGTVQIKMFDGCI 319

Query: 362 RKLTDVRYVPNLRRNLISLGVFDTNSYSCKF*NGIWRVCKGSLVILKG-FKKNGLHTLLS 538
           R L+DVR++PNL+R+LIS    D   Y     +GI +V KGSLV++K   K   L+ L  
Sbjct: 320 RTLSDVRHIPNLKRSLISFCTLDRKGYKYSGGDGILKVTKGSLVVMKADIKSANLYHLRG 379

Query: 539 KTICESSTLFTKTV--SEKSML*HRRTGHINEKGLQYLNK*NLLNGEKIDYLDFYDHYVL 712
            TI  +    + ++  S+ + L H R GH++E GL  L+K  LL G+ I  L F +H + 
Sbjct: 380 TTILGNVAAVSDSLSNSDATNLWHMRLGHMSEIGLAELSKRGLLYGQSIGKLKFCEHCIF 439

Query: 713 GKQYKLSFSTGTHKPTAVLDYMHCDL*GLKKEPTYGGNVYFLSIVED 853
           GK  ++ F+T TH    +LDY+H DL G  ++ ++GG  Y ++IV+D
Sbjct: 440 GKHKRVKFNTSTHTTEGILDYVHSDLWGPARKTSFGGARYIMTIVDD 486



 Score = 77.8 bits (190), Expect(2) = 3e-56
 Identities = 34/71 (47%), Positives = 43/71 (60%)
 Frame = +1

Query: 868  IWIFLLKAKGQTFEKFIEWKRFAENQTGNKLKVIRMHNRLEFCKKKFNDLCASHGIMHHK 1047
            +W + LK K Q F+ F EWK   E QT  K+K++R  N +EFC K F   C S GI+ H 
Sbjct: 491  VWPYFLKHKYQAFDVFKEWKTMVERQTERKVKILRTDNGMEFCSKIFKSYCKSEGIVRHY 550

Query: 1048 TVRHNSQQNGV 1080
            T+ H  QQNGV
Sbjct: 551  TIPHTPQQNGV 561


>gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1241

 Score =  169 bits (427), Expect(3) = 6e-56
 Identities = 89/231 (38%), Positives = 139/231 (60%), Gaps = 3/231 (1%)
 Frame = +2

Query: 170 FPSSSNVSDE*IHDSGCTFHITPNKHWFSDFETLDYGKVFLGNNEVCDIKLIGNLFIKMH 349
           +   +  SD+ I D+ CT+H+ PN+ WF+ +E +  G V +G++  C++  IG + IKM 
Sbjct: 199 YAGCAQTSDQWILDTACTYHMCPNRDWFATYEAVQGGTVLMGDDTPCEVAGIGTVQIKMF 258

Query: 350 DGMSRKLTDVRYVPNLRRNLISLGVFDTNSYSCKF*NGIWRVCKGSLVILKG-FKKNGLH 526
           DG  R L DVR++PNL+R+LISL   D   Y     +GI +V KGSLV++K   K   L+
Sbjct: 259 DGCIRTLLDVRHIPNLKRSLISLCTLDRKGYKYSGGDGILKVTKGSLVVMKADIKYANLY 318

Query: 527 TLLSKTICESSTLFTKTV--SEKSML*HRRTGHINEKGLQYLNK*NLLNGEKIDYLDFYD 700
            L   TI  +    + ++  S+ + L H R GH++E GL  L+K  LL+G+ I  L F +
Sbjct: 319 HLRGTTILGNVAAVSDSLSNSDATNLWHMRLGHMSEIGLAELSKRGLLDGQSIGKLKFCE 378

Query: 701 HYVLGKQYKLSFSTGTHKPTAVLDYMHCDL*GLKKEPTYGGNVYFLSIVED 853
           H + GK  ++ F+T TH    +LDY+H DL G  ++ ++GG  Y ++IV+D
Sbjct: 379 HCIFGKHKRVKFNTSTHTTEGILDYVHSDLWGPARKTSFGGARYMMTIVDD 429



 Score = 75.9 bits (185), Expect(3) = 6e-56
 Identities = 34/71 (47%), Positives = 42/71 (59%)
 Frame = +1

Query: 868  IWIFLLKAKGQTFEKFIEWKRFAENQTGNKLKVIRMHNRLEFCKKKFNDLCASHGIMHHK 1047
            +W + LK K Q F+ F EWK   E QT  K+K++R  N +E C K F   C S GI+ H 
Sbjct: 434  VWPYFLKHKYQAFDVFKEWKTMVERQTERKVKILRTDNGMELCSKIFKSYCKSEGIVRHY 493

Query: 1048 TVRHNSQQNGV 1080
            TV H  QQNGV
Sbjct: 494  TVPHTPQQNGV 504



 Score = 21.9 bits (45), Expect(3) = 6e-56
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = +3

Query: 3   CFYCDKDDHMKNKCF*WIRDEKQRK 77
           C YC +D H  ++C  W   +K ++
Sbjct: 145 CKYCKRDGHDISEC--WKLQDKDKR 167


>gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
            Japonica Group] gi|77548751|gb|ABA91548.1|
            retrotransposon protein, putative, Ty1-copia subclass
            [Oryza sativa Japonica Group]
          Length = 2340

 Score =  167 bits (423), Expect(2) = 7e-56
 Identities = 87/231 (37%), Positives = 138/231 (59%), Gaps = 3/231 (1%)
 Frame = +2

Query: 170  FPSSSNVSDE*IHDSGCTFHITPNKHWFSDFETLDYGKVFLGNNEVCDIKLIGNLFIKMH 349
            +   +  SD+ I ++ C +H+ PN+ WF+ +E +  G V +G++  C++  IG + IKM 
Sbjct: 497  YAGCAQTSDQWILNTACIYHMCPNRDWFATYEAVQVGTVLMGDDTPCEVAGIGTVQIKMF 556

Query: 350  DGMSRKLTDVRYVPNLRRNLISLGVFDTNSYSCKF*NGIWRVCKGSLVILKG-FKKNGLH 526
            DG  R L+DVR++PNL+R+LISL   D   Y     +GI +V KGSLV++K   K   L+
Sbjct: 557  DGCIRTLSDVRHIPNLKRSLISLCTLDRKGYKYSGGDGILKVTKGSLVVMKADIKSANLY 616

Query: 527  TLLSKTICESSTLFTKTV--SEKSML*HRRTGHINEKGLQYLNK*NLLNGEKIDYLDFYD 700
             L   TI  +    + ++  S+ + L H R GH+ E GL  L+K  LL+G+ I  L F +
Sbjct: 617  HLRGTTILGNVAAVSDSLSNSDATNLWHMRLGHMTEIGLAELSKRGLLDGQSIGKLKFCE 676

Query: 701  HYVLGKQYKLSFSTGTHKPTAVLDYMHCDL*GLKKEPTYGGNVYFLSIVED 853
            H + GK  ++ F+T TH    +LDY+H DL G  ++ ++GG  Y ++IV+D
Sbjct: 677  HCIFGKHKRVKFNTSTHTTEGILDYVHSDLWGPARKTSFGGTRYMMTIVDD 727



 Score = 78.2 bits (191), Expect(2) = 7e-56
 Identities = 35/71 (49%), Positives = 43/71 (60%)
 Frame = +1

Query: 868  IWIFLLKAKGQTFEKFIEWKRFAENQTGNKLKVIRMHNRLEFCKKKFNDLCASHGIMHHK 1047
            +W + LK K Q F+ F EWK   E QT  K+K++R  N +EFC K F   C S GI+ H 
Sbjct: 732  VWPYFLKHKYQAFDVFKEWKTMVERQTERKVKILRTDNGMEFCSKIFKSYCKSEGIVRHY 791

Query: 1048 TVRHNSQQNGV 1080
            TV H  QQNGV
Sbjct: 792  TVPHTPQQNGV 802


>ref|NP_001065797.2| Os11g0157000 [Oryza sativa Japonica Group]
           gi|255679807|dbj|BAF27642.2| Os11g0157000 [Oryza sativa
           Japonica Group]
          Length = 1601

 Score =  167 bits (423), Expect(2) = 7e-56
 Identities = 87/231 (37%), Positives = 138/231 (59%), Gaps = 3/231 (1%)
 Frame = +2

Query: 170 FPSSSNVSDE*IHDSGCTFHITPNKHWFSDFETLDYGKVFLGNNEVCDIKLIGNLFIKMH 349
           +   +  SD+ I ++ C +H+ PN+ WF+ +E +  G V +G++  C++  IG + IKM 
Sbjct: 290 YAGCAQTSDQWILNTACIYHMCPNRDWFATYEAVQVGTVLMGDDTPCEVAGIGTVQIKMF 349

Query: 350 DGMSRKLTDVRYVPNLRRNLISLGVFDTNSYSCKF*NGIWRVCKGSLVILKG-FKKNGLH 526
           DG  R L+DVR++PNL+R+LISL   D   Y     +GI +V KGSLV++K   K   L+
Sbjct: 350 DGCIRTLSDVRHIPNLKRSLISLCTLDRKGYKYSGGDGILKVTKGSLVVMKADIKSANLY 409

Query: 527 TLLSKTICESSTLFTKTV--SEKSML*HRRTGHINEKGLQYLNK*NLLNGEKIDYLDFYD 700
            L   TI  +    + ++  S+ + L H R GH+ E GL  L+K  LL+G+ I  L F +
Sbjct: 410 HLRGTTILGNVAAVSDSLSNSDATNLWHMRLGHMTEIGLAELSKRGLLDGQSIGKLKFCE 469

Query: 701 HYVLGKQYKLSFSTGTHKPTAVLDYMHCDL*GLKKEPTYGGNVYFLSIVED 853
           H + GK  ++ F+T TH    +LDY+H DL G  ++ ++GG  Y ++IV+D
Sbjct: 470 HCIFGKHKRVKFNTSTHTTEGILDYVHSDLWGPARKTSFGGTRYMMTIVDD 520



 Score = 78.2 bits (191), Expect(2) = 7e-56
 Identities = 35/71 (49%), Positives = 43/71 (60%)
 Frame = +1

Query: 868  IWIFLLKAKGQTFEKFIEWKRFAENQTGNKLKVIRMHNRLEFCKKKFNDLCASHGIMHHK 1047
            +W + LK K Q F+ F EWK   E QT  K+K++R  N +EFC K F   C S GI+ H 
Sbjct: 525  VWPYFLKHKYQAFDVFKEWKTMVERQTERKVKILRTDNGMEFCSKIFKSYCKSEGIVRHY 584

Query: 1048 TVRHNSQQNGV 1080
            TV H  QQNGV
Sbjct: 585  TVPHTPQQNGV 595


>emb|CAN61630.1| hypothetical protein VITISV_003191 [Vitis vinifera]
          Length = 1208

 Score =  157 bits (398), Expect(2) = 1e-53
 Identities = 86/213 (40%), Positives = 123/213 (57%)
 Frame = +2

Query: 215 GCTFHITPNKHWFSDFETLDYGKVFLGNNEVCDIKLIGNLFIKMHDGMSRKLTDVRYVPN 394
           G  F    +K     F+  D G V LGNN+ C I   G + IK +DG+ R L DVRY+P 
Sbjct: 266 GALFTCVLSKLGLKTFKEADGGYVLLGNNKHCKILGTGTVRIKHYDGIERVLEDVRYIPE 325

Query: 395 LRRNLISLGVFDTNSYSCKF*NGIWRVCKGSLVILKGFKKNGLHTLLSKTICESSTLFTK 574
           L+RNLISLG+ D + Y+ K      RV +GSL ++KG  KNGL+TL+ +T+    +   K
Sbjct: 326 LKRNLISLGMLDKSGYTFKSEPNSLRVARGSLTVMKGTIKNGLYTLIGQTVTGKVSTVLK 385

Query: 575 TVSEKSML*HRRTGHINEKGLQYLNK*NLLNGEKIDYLDFYDHYVLGKQYKLSFSTGTHK 754
                + L H+R GHI+ +GLQ L K  +L   K+  L F +H V GK  ++ F+   H+
Sbjct: 386 EDVGTTKLWHQRLGHISHRGLQELEKQGVLGNYKLTDLPFCEHCVFGKATRVKFAKAIHE 445

Query: 755 PTAVLDYMHCDL*GLKKEPTYGGNVYFLSIVED 853
               LDY+H DL G  + P+ GG  YFL++++D
Sbjct: 446 TQNQLDYIHSDLWGPSRVPSIGGARYFLTLIDD 478



 Score = 80.1 bits (196), Expect(2) = 1e-53
 Identities = 36/71 (50%), Positives = 44/71 (61%)
 Frame = +1

Query: 868  IWIFLLKAKGQTFEKFIEWKRFAENQTGNKLKVIRMHNRLEFCKKKFNDLCASHGIMHHK 1047
            +WI+ LK K +TF KF EWK   E QT  K+K +R  N LEF    FN LC   GI  H+
Sbjct: 483  VWIYFLKNKSETFLKFKEWKILVETQTSRKVKKLRTDNGLEFLSNDFNSLCQKEGIARHR 542

Query: 1048 TVRHNSQQNGV 1080
            TVR+  QQNG+
Sbjct: 543  TVRYTPQQNGL 553


>emb|CAN61272.1| hypothetical protein VITISV_039063 [Vitis vinifera]
          Length = 1643

 Score =  148 bits (374), Expect(2) = 7e-53
 Identities = 94/256 (36%), Positives = 150/256 (58%), Gaps = 4/256 (1%)
 Frame = +2

Query: 98   KYNKPNDF--EPDGNSMYTVVLRVSPFPSSSNVSDE*IHDSGCTFHITPNKHWFSDFETL 271
            KY +  D   E +G  + TV        S+S+ ++  I D+G ++H+  ++  F+ F+  
Sbjct: 592  KYXEKXDSSDEGEGGDVLTV--------STSSSAESWILDTGASYHMAYSRDLFTTFKEW 643

Query: 272  DYGKVFLGNNEVCDIKLIGNLFIKMHDGMSRKLTDVRYVPNLRRNLISLGVFDTNSYSCK 451
            + G V LG++    +K  G++ IKM+DG+ R L +  YVP LR+NLIS+G  D N Y+  
Sbjct: 644  N-GSVKLGDDGELGVKGSGSVQIKMYDGLVRTL-NAWYVPGLRKNLISVGTLDKNGYTFS 701

Query: 452  F*NGIWRVCKGSLVILKGFKKNGLHTLLSKTICESSTLFTKTVSEKSM--L*HRRTGHIN 625
               G+ RV KG+LV++KG  ++G++TL+      SS L T  V E +   L HRR GH++
Sbjct: 702  GSGGVLRVSKGALVVMKGRLQHGIYTLMG-----SSVLGTAAVEEDNCTELWHRRLGHMS 756

Query: 626  EKGLQYLNK*NLLNGEKIDYLDFYDHYVLGKQYKLSFSTGTHKPTAVLDYMHCDL*GLKK 805
            EKGL  L+K  LL+G +   L F +  V+GKQ ++ FS G+H    VL+Y+H DL G   
Sbjct: 757  EKGLSILSKQGLLSGAETGKLKFCETCVMGKQRRVKFSMGSHTTNGVLEYIHSDLWGPSP 816

Query: 806  EPTYGGNVYFLSIVED 853
              ++ G  Y+++ ++D
Sbjct: 817  VESHSGCRYYVTFIDD 832



 Score = 87.0 bits (214), Expect(2) = 7e-53
 Identities = 36/71 (50%), Positives = 47/71 (66%)
 Frame = +1

Query: 868  IWIFLLKAKGQTFEKFIEWKRFAENQTGNKLKVIRMHNRLEFCKKKFNDLCASHGIMHHK 1047
            +W++ LKAK + F KF EWK   E +TG  +K +R  N LEFC K F++ C   GI+ H+
Sbjct: 837  VWVYFLKAKDEVFGKFKEWKTMVEKRTGKVVKTLRTDNGLEFCNKDFDEFCRKEGIVRHR 896

Query: 1048 TVRHNSQQNGV 1080
            TVRH  QQNGV
Sbjct: 897  TVRHTPQQNGV 907


>emb|CAD40363.2| OSJNBa0093P23.9 [Oryza sativa Japonica Group]
          Length = 944

 Score =  167 bits (422), Expect(2) = 7e-53
 Identities = 88/231 (38%), Positives = 139/231 (60%), Gaps = 3/231 (1%)
 Frame = +2

Query: 170 FPSSSNVSDE*IHDSGCTFHITPNKHWFSDFETLDYGKVFLGNNEVCDIKLIGNLFIKMH 349
           +   +  SD+ I D+ CT+H+ PN+ WF+ +E +  G V +G++  C++  IG + IKM 
Sbjct: 122 YAGCAQTSDQWILDTACTYHMCPNRDWFATYEAVQGGTVLMGDDTPCEVAGIGIVQIKMF 181

Query: 350 DGMSRKLTDVRYVPNLRRNLISLGVFDTNSYSCKF*NGIWRVCKGSLVILKG-FKKNGLH 526
           DG    L+DVR++PNL+R+LISL   D   Y     +GI +V KGSLV++K   K   L+
Sbjct: 182 DGCISTLSDVRHIPNLKRSLISLCTLDRKGYKYSGGDGILKVTKGSLVVMKADIKSANLY 241

Query: 527 TLLSKTICESSTLFTKTV--SEKSML*HRRTGHINEKGLQYLNK*NLLNGEKIDYLDFYD 700
            L   TI  +    + ++  S+ + L H R GH++E GL  L+K  LL+G+ I  L F +
Sbjct: 242 HLRGTTILGNVAAVSDSLSNSDATNLWHMRLGHMSEIGLAELSKRGLLDGQSIGKLKFCE 301

Query: 701 HYVLGKQYKLSFSTGTHKPTAVLDYMHCDL*GLKKEPTYGGNVYFLSIVED 853
           H + GK  ++ F+T TH    +LDY+H DL G  ++ ++GG  Y ++IV+D
Sbjct: 302 HCIFGKHKRVKFNTSTHTTEGILDYVHSDLWGPARKTSFGGARYIMTIVDD 352



 Score = 68.6 bits (166), Expect(2) = 7e-53
 Identities = 33/71 (46%), Positives = 41/71 (57%)
 Frame = +1

Query: 868  IWIFLLKAKGQTFEKFIEWKRFAENQTGNKLKVIRMHNRLEFCKKKFNDLCASHGIMHHK 1047
            +W + LK K Q F+ F EWK   E QT  K+K++R  N +EFC K F   C S GI+ H 
Sbjct: 357  VWPYFLKHKYQAFDVFKEWKTMVERQTERKVKILRTDNGMEFCSKIFKSYCKSEGIVRHY 416

Query: 1048 TVRHNSQQNGV 1080
            T     QQNGV
Sbjct: 417  T----PQQNGV 423


>emb|CAH66022.1| OSIGBa0105O19.1 [Oryza sativa Indica Group]
          Length = 944

 Score =  167 bits (422), Expect(2) = 7e-53
 Identities = 88/231 (38%), Positives = 139/231 (60%), Gaps = 3/231 (1%)
 Frame = +2

Query: 170 FPSSSNVSDE*IHDSGCTFHITPNKHWFSDFETLDYGKVFLGNNEVCDIKLIGNLFIKMH 349
           +   +  SD+ I D+ CT+H+ PN+ WF+ +E +  G V +G++  C++  IG + IKM 
Sbjct: 122 YAGCAQTSDQWILDTACTYHMCPNRDWFATYEAVQGGTVLMGDDTPCEVAGIGIVQIKMF 181

Query: 350 DGMSRKLTDVRYVPNLRRNLISLGVFDTNSYSCKF*NGIWRVCKGSLVILKG-FKKNGLH 526
           DG    L+DVR++PNL+R+LISL   D   Y     +GI +V KGSLV++K   K   L+
Sbjct: 182 DGCISTLSDVRHIPNLKRSLISLCTLDRKGYKYSGGDGILKVTKGSLVVMKADIKSANLY 241

Query: 527 TLLSKTICESSTLFTKTV--SEKSML*HRRTGHINEKGLQYLNK*NLLNGEKIDYLDFYD 700
            L   TI  +    + ++  S+ + L H R GH++E GL  L+K  LL+G+ I  L F +
Sbjct: 242 HLRGTTILGNVAAVSDSLSNSDATNLWHMRLGHMSEIGLAELSKRGLLDGQSIGKLKFCE 301

Query: 701 HYVLGKQYKLSFSTGTHKPTAVLDYMHCDL*GLKKEPTYGGNVYFLSIVED 853
           H + GK  ++ F+T TH    +LDY+H DL G  ++ ++GG  Y ++IV+D
Sbjct: 302 HCIFGKHKRVKFNTSTHTTEGILDYVHSDLWGPARKTSFGGARYIMTIVDD 352



 Score = 68.6 bits (166), Expect(2) = 7e-53
 Identities = 33/71 (46%), Positives = 41/71 (57%)
 Frame = +1

Query: 868  IWIFLLKAKGQTFEKFIEWKRFAENQTGNKLKVIRMHNRLEFCKKKFNDLCASHGIMHHK 1047
            +W + LK K Q F+ F EWK   E QT  K+K++R  N +EFC K F   C S GI+ H 
Sbjct: 357  VWPYFLKHKYQAFDVFKEWKTMVERQTERKVKILRTDNGMEFCSKIFKSYCKSEGIVRHY 416

Query: 1048 TVRHNSQQNGV 1080
            T     QQNGV
Sbjct: 417  T----PQQNGV 423


>gb|ABA97637.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 1278

 Score =  154 bits (388), Expect(3) = 7e-51
 Identities = 88/224 (39%), Positives = 129/224 (57%), Gaps = 4/224 (1%)
 Frame = +2

Query: 194 DE*IHDSGCTFHITPNKHWFSDFETLDYGKVF-LGNNEVCDIKLIGNLFIKMHDGMSRKL 370
           DE I D+ C+FHI  N+ WFS ++++  G V  +GN+   +I  IG++ IK HDG++R L
Sbjct: 290 DEWILDTACSFHIYINRDWFSSYKSVQNGDVVRMGNDNPREIVGIGSVQIKTHDGITRTL 349

Query: 371 TDVRYVPNLRRNLISLGVFDTNSYSCKF*NGIWRVCKGSLVILKG-FKKNGLHTLLSKTI 547
            DVR++P + RNLISL   D   Y      G+ +V KGSLV + G      L+ L   T+
Sbjct: 350 KDVRHIPGMARNLISLSTLDAEGYKYSGSGGVVKVSKGSLVYMIGDMNSANLYVLRGSTL 409

Query: 548 CESSTL--FTKTVSEKSML*HRRTGHINEKGLQYLNK*NLLNGEKIDYLDFYDHYVLGKQ 721
             S T    TK    K+ L H R GH++E G+  L K NLL+G     + F +  V GK 
Sbjct: 410 HGSVTAAAVTKDEPNKTNLWHMRLGHMSELGMAELMKRNLLDGCTQGNMKFCERCVFGKH 469

Query: 722 YKLSFSTGTHKPTAVLDYMHCDL*GLKKEPTYGGNVYFLSIVED 853
            ++ F+T  H+   +LDY+H DL G  ++P+ GG  Y L+I++D
Sbjct: 470 KRVKFNTSVHRTKGILDYVHADLWGPSRKPSLGGARYMLTIIDD 513



 Score = 71.2 bits (173), Expect(3) = 7e-51
 Identities = 32/71 (45%), Positives = 41/71 (57%)
 Frame = +1

Query: 868  IWIFLLKAKGQTFEKFIEWKRFAENQTGNKLKVIRMHNRLEFCKKKFNDLCASHGIMHHK 1047
            +W + LK K  TF  F EWK   E QT  ++KV+R  N  EFC   F+D C   GI+ H 
Sbjct: 518  VWPYFLKHKDDTFAAFKEWKVMIERQTEKEVKVLRTDNAGEFCSDAFDDYCRKEGIVRHH 577

Query: 1048 TVRHNSQQNGV 1080
            T+ +  QQNGV
Sbjct: 578  TIPYTPQQNGV 588



 Score = 24.6 bits (52), Expect(3) = 7e-51
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = +3

Query: 3   CFYCDKDDHMKNKCF*WIRDEKQRKKGNESI 95
           C YC K  H   +C+     EK++  G  S+
Sbjct: 236 CKYCKKKIHFIKECWKLQNKEKRKSDGKASV 266


>gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza
           sativa Japonica Group] gi|77549942|gb|ABA92739.1|
           retrotransposon protein, putative, Ty1-copia subclass
           [Oryza sativa Japonica Group]
          Length = 1373

 Score =  154 bits (388), Expect(2) = 2e-50
 Identities = 88/225 (39%), Positives = 126/225 (56%), Gaps = 5/225 (2%)
 Frame = +2

Query: 194 DE*IHDSGCTFHITPNKHWFSDFETLDYGKVF-LGNNEVCDIKLIGNLFIKMHDGMSRKL 370
           DE I DS C+FHI   ++WFS ++ +  G V  +G++  C I  IG++ IK  DGM+R L
Sbjct: 288 DEWILDSACSFHICTKRNWFSSYKPVQKGDVVRMGDDNPCAIVGIGSVQIKTDDGMTRTL 347

Query: 371 TDVRYVPNLRRNLISLGVFDTNSYSCKF*NGIWRVCKGSLVILKGFKKNG-LHTLLSKTI 547
            +VRY+P + RNLISL   D   Y     +G+ +V KGSLV LKG   +  L+ L   T+
Sbjct: 348 KNVRYIPGMSRNLISLSTLDAEGYKYSGSDGVLKVSKGSLVCLKGDVNSAKLYVLRGCTL 407

Query: 548 CESSTL---FTKTVSEKSML*HRRTGHINEKGLQYLNK*NLLNGEKIDYLDFYDHYVLGK 718
             S +     T     K+ L H R GH++  G+  L K NLL G     + F +H + GK
Sbjct: 408 TGSDSAAAAITNDEPSKTNLWHMRLGHMSHLGMTELMKRNLLKGCTSSKIKFCEHCIFGK 467

Query: 719 QYKLSFSTGTHKPTAVLDYMHCDL*GLKKEPTYGGNVYFLSIVED 853
             ++ F+T  H     LDY+H DL G  K+P+ GG  Y L+I++D
Sbjct: 468 HKRVQFNTSVHTTKGTLDYVHADLWGPSKKPSLGGARYMLTIIDD 512



 Score = 73.6 bits (179), Expect(2) = 2e-50
 Identities = 33/71 (46%), Positives = 40/71 (56%)
 Frame = +1

Query: 868  IWIFLLKAKGQTFEKFIEWKRFAENQTGNKLKVIRMHNRLEFCKKKFNDLCASHGIMHHK 1047
            +W + LK K  TF  F  WK   E QT  K+K++R  N  EFC   FND C   GI+ H 
Sbjct: 517  VWPYFLKHKDDTFTAFKNWKVMIERQTERKVKLLRTDNGGEFCSHAFNDYCRQEGIVRHH 576

Query: 1048 TVRHNSQQNGV 1080
            T+ H  QQNGV
Sbjct: 577  TIPHTPQQNGV 587


>gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 1333

 Score =  153 bits (387), Expect(2) = 2e-50
 Identities = 87/225 (38%), Positives = 127/225 (56%), Gaps = 5/225 (2%)
 Frame = +2

Query: 194 DE*IHDSGCTFHITPNKHWFSDFETLDYGKVF-LGNNEVCDIKLIGNLFIKMHDGMSRKL 370
           DE I DS C+FHI   ++WFS ++ +  G V  +G++  C I  IG++ IK  DGM+R L
Sbjct: 288 DEWILDSACSFHICTKRNWFSSYKPVQKGDVVRMGDDNPCAIVGIGSVQIKTDDGMTRTL 347

Query: 371 TDVRYVPNLRRNLISLGVFDTNSYSCKF*NGIWRVCKGSLVILKGFKKNG-LHTLLSKTI 547
            +VRY+P + RNLISL   D   Y     +G+ +V KGSLV LKG   +  L+ L   T+
Sbjct: 348 KNVRYIPGMSRNLISLSTLDAEGYKYSGSDGVLKVSKGSLVCLKGDLNSAKLYVLRGCTL 407

Query: 548 CESSTLFTKTVSE---KSML*HRRTGHINEKGLQYLNK*NLLNGEKIDYLDFYDHYVLGK 718
             S +      ++   K+ L H R GH++  G+  L K NLL G     + F +H + GK
Sbjct: 408 TGSDSAAAAVTNDEPSKTNLWHMRLGHMSHLGMTELMKRNLLKGCTSSKIKFCEHCIFGK 467

Query: 719 QYKLSFSTGTHKPTAVLDYMHCDL*GLKKEPTYGGNVYFLSIVED 853
             ++ F+T  H     LDY+H DL G  K+P+ GG  Y L+I++D
Sbjct: 468 HKRVQFNTSVHTTKGTLDYVHADLWGPSKKPSLGGARYMLTIIDD 512



 Score = 73.6 bits (179), Expect(2) = 2e-50
 Identities = 33/71 (46%), Positives = 40/71 (56%)
 Frame = +1

Query: 868  IWIFLLKAKGQTFEKFIEWKRFAENQTGNKLKVIRMHNRLEFCKKKFNDLCASHGIMHHK 1047
            +W + LK K  TF  F  WK   E QT  K+K++R  N  EFC   FND C   GI+ H 
Sbjct: 517  VWPYFLKHKDDTFTAFKNWKVMIERQTERKVKLLRTDNGGEFCSHAFNDYCRQEGIVRHH 576

Query: 1048 TVRHNSQQNGV 1080
            T+ H  QQNGV
Sbjct: 577  TIPHTPQQNGV 587


>gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 1333

 Score =  153 bits (386), Expect(2) = 3e-50
 Identities = 86/225 (38%), Positives = 127/225 (56%), Gaps = 5/225 (2%)
 Frame = +2

Query: 194 DE*IHDSGCTFHITPNKHWFSDFETLDYGKVF-LGNNEVCDIKLIGNLFIKMHDGMSRKL 370
           DE I DS C+FHI   ++WFS ++ +  G V  +G++  C I  IG++ IK  DGM+R L
Sbjct: 288 DEWILDSACSFHICTKRNWFSSYKPVQKGDVVRMGDDNPCAIVGIGSVQIKTDDGMTRTL 347

Query: 371 TDVRYVPNLRRNLISLGVFDTNSYSCKF*NGIWRVCKGSLVILKGFKKNG-LHTLLSKTI 547
            +VRY+P + RNLISL   D   Y     +G+ +V KGSLV LKG   +  L+ L   T+
Sbjct: 348 KNVRYIPGMSRNLISLSTLDAEGYKYSGSDGVLKVSKGSLVCLKGDLNSAKLYVLRGCTL 407

Query: 548 CESSTLFTKTVSE---KSML*HRRTGHINEKGLQYLNK*NLLNGEKIDYLDFYDHYVLGK 718
             S +      ++   K+ L H R GH++  G+  L K NLL G     + F +H + GK
Sbjct: 408 TGSDSAAAAVTNDEPSKTNLWHMRLGHMSHLGMTELMKRNLLKGCTSSKIKFCEHCIFGK 467

Query: 719 QYKLSFSTGTHKPTAVLDYMHCDL*GLKKEPTYGGNVYFLSIVED 853
             ++ F+T  H     LDY+H DL G  K+P+ GG  Y L++++D
Sbjct: 468 HKRVQFNTSVHTTKGTLDYVHADLWGPSKKPSLGGARYMLTVIDD 512



 Score = 73.6 bits (179), Expect(2) = 3e-50
 Identities = 33/71 (46%), Positives = 40/71 (56%)
 Frame = +1

Query: 868  IWIFLLKAKGQTFEKFIEWKRFAENQTGNKLKVIRMHNRLEFCKKKFNDLCASHGIMHHK 1047
            +W + LK K  TF  F  WK   E QT  K+K++R  N  EFC   FND C   GI+ H 
Sbjct: 517  VWPYFLKHKDDTFTAFKNWKVMIERQTERKVKLLRTDNGGEFCSHAFNDYCRQEGIVRHH 576

Query: 1048 TVRHNSQQNGV 1080
            T+ H  QQNGV
Sbjct: 577  TIPHTPQQNGV 587