BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Catharanthus22_contig00027691
         (592 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAB87099.1| putative retroelement pol polyprotein [Arabidopsi...    59   7e-07

>gb|AAB87099.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1496

 Score = 59.3 bits (142), Expect = 7e-07
 Identities = 51/175 (29%), Positives = 72/175 (41%)
 Frame = +3

Query: 12  DKSSLPCTICNKMGHEAKSCFQVMGFPDRWLEKNREHSNRDGRGIMNRRVXXXXXXXXXX 191
           DKS+L CT CN+ GHE   CF V G+PD WLE+N + +    RG                
Sbjct: 254 DKSTLFCTHCNRKGHEVTQCFLVHGYPDWWLEQNPQENQPSTRG---------------- 297

Query: 192 XXXXXSVQHV*ALPSSQAGSDSSVIGGRQSDMETEMTFSATAGGGSALPFCHQQWDNFFK 371
                         S+  GS S   G R S   T     A     +A        D   +
Sbjct: 298 ------------RGSNGRGSSSGRGGNRSSAPTTRGRGRANNAQAAAPTVSGDGNDQIAQ 345

Query: 372 LVKNQTHEITEPTSSNDRLSGNKSSKTHCWTIDSIIRSNSSYDLQF*LSFLVEKY 536
           L+     +   P+SS++RLSGN      C T D +I + +S+ +    S LV+ +
Sbjct: 346 LI--SLLQAQRPSSSSERLSGNT-----CLT-DGVIDTGASHHMTGDCSILVDVF 392