BLASTX nr result

ID: Catharanthus22_contig00027627 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Catharanthus22_contig00027627
         (231 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_006360351.1| PREDICTED: F-box/kelch-repeat protein At3g23...    58   1e-06
ref|XP_006356789.1| PREDICTED: F-box protein At4g19940-like, par...    55   1e-05

>ref|XP_006360351.1| PREDICTED: F-box/kelch-repeat protein At3g23880-like [Solanum
           tuberosum]
          Length = 389

 Score = 58.2 bits (139), Expect = 1e-06
 Identities = 26/48 (54%), Positives = 39/48 (81%)
 Frame = -2

Query: 158 IPDDALIEILLRLQVKSLFRFKSVSKFLVSLLTSPQFIDMHLKFSIAR 15
           +PD+ +IEILLRL VKSL +F+ VSK+ +SLL++P FI+  +KFS+ +
Sbjct: 22  LPDEIIIEILLRLPVKSLLKFRCVSKYWLSLLSTPYFINTQIKFSVKK 69


>ref|XP_006356789.1| PREDICTED: F-box protein At4g19940-like, partial [Solanum
           tuberosum]
          Length = 168

 Score = 55.1 bits (131), Expect = 1e-05
 Identities = 28/59 (47%), Positives = 41/59 (69%)
 Frame = -2

Query: 197 SYGQSTKMATIVNIPDDALIEILLRLQVKSLFRFKSVSKFLVSLLTSPQFIDMHLKFSI 21
           S   +  + TI  +P + +IEIL RL VKSL +F+SVSK  +S+++SP+FI  HL+ SI
Sbjct: 59  STSMNNSILTIPFLPAELIIEILSRLPVKSLLKFRSVSKSWLSIISSPKFIKTHLRVSI 117


Top