BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Catharanthus22_contig00027453
         (1091 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAT01387.1| putative polyprotein [Oryza sativa Japonica Group...   129   7e-47
gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|1337118...   168   2e-46
emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis]        172   3e-46
emb|CAH66122.1| OSIGBa0146N20.7 [Oryza sativa Indica Group]           160   2e-44
gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-...   159   3e-44
gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subc...   159   3e-44
gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subc...   156   3e-43
gb|AAT44282.1| putative polyprotein [Oryza sativa Japonica Group]     152   8e-42
emb|CAJ86151.1| H0413E07.4 [Oryza sativa Indica Group]                152   8e-42
emb|CAJ86192.1| H0306F03.15 [Oryza sativa Indica Group]               152   8e-42
gb|AAR87163.1| putative polyprotein [Oryza sativa Japonica Group...   152   2e-41
gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-...   155   2e-41
gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]     150   3e-41
dbj|BAB09923.1| copia-like retrotransposable element [Arabidopsi...   147   5e-41
gb|AAD19773.1| putative retroelement pol polyprotein [Arabidopsi...   142   4e-40
gb|AAL91607.1|AC099400_13 Putative pol polyprotein [Oryza sativa...   148   4e-40
gb|AAT44257.1| putative polyprotein [Oryza sativa Japonica Group]     147   6e-40
emb|CAB75481.1| copia-like polyprotein [Arabidopsis thaliana]         148   7e-40
gb|AFB73912.1| polyprotein [Citrus sinensis]                          137   2e-39
gb|AAV88069.1| hypothetical retrotransposon [Ipomoea batatas]         146   4e-39

>gb|AAT01387.1| putative polyprotein [Oryza sativa Japonica Group]
            gi|48475101|gb|AAT44170.1| putative polyprotein [Oryza
            sativa Japonica Group]
          Length = 1175

 Score =  129 bits (324), Expect(3) = 7e-47
 Identities = 72/212 (33%), Positives = 117/212 (55%), Gaps = 1/212 (0%)
 Frame = +1

Query: 286  EKSLYGLKQSP*QWYKRLNSFMIKSGFAKRNYDSCLYFCGDNIDNVVYLLHYVDDMIIGC 465
            ++SLYGLKQSP QWYKR +SFM+  GF +  +DSC+Y    N+ + +YLL YVDDM+I  
Sbjct: 806  KRSLYGLKQSPRQWYKRFDSFMLSHGFKRSEFDSCVYIKFVNV-SPIYLLLYVDDMLIAA 864

Query: 466  KYKEKIVNLKYLIKSEFNTKDLVPLLESFA*TLIGIHMIILCLYPINIS*RKLFPNFLWT 645
            K KE+I  LK  + SEF+ KDL    +     +                 +K+   F   
Sbjct: 865  KSKEQITTLKKQLSSEFDMKDLDAAKKILGMEITRDRNSGWLFLSQQSYIKKVLQRFNMH 924

Query: 646  CVSPLVPLLLATFSFLP-KYPKIKNEKKIMANIRYRMAIGSIIYSMIFIRHDIAYSITLL 822
               P+   +   F     +      + + M+ + Y   +GS++Y+M+  R D++++++L+
Sbjct: 925  DTKPVSTHIAPHFKLSALQCASTDEDVEYMSRVPYSSVVGSLMYAMVCSRLDLSHAMSLV 984

Query: 823  SRFMSNPSRDHWAALKLLLRYLDGTLNRGLHY 918
            SR+M+NP ++HW A++ + RYL  T N  L +
Sbjct: 985  SRYMANPGKEHWKAIQWIFRYLRDTANACLKF 1016



 Score = 62.4 bits (150), Expect(3) = 7e-47
 Identities = 33/60 (55%), Positives = 38/60 (63%)
 Frame = +2

Query: 110 FSKYKTIRIMLAVVVCFDLELEQLDVKTAF*HGTLERTIYMRQPPNFEVKVKENLASLLK 289
           F K+ +IR   ++V   DLELEQLDVKTAF HG LE  IYM QP  F V  KE+    LK
Sbjct: 747 FVKHSSIRTFFSIVAMHDLELEQLDVKTAFLHGELEEEIYMDQPEGFIVPGKEDYVCKLK 806



 Score = 44.7 bits (104), Expect(3) = 7e-47
 Identities = 21/37 (56%), Positives = 26/37 (70%)
 Frame = +2

Query: 980  DFRKSTTSYFFTLAINCISWKSQLQFVVALSTTEAEY 1090
            D R+S T Y FT+    +SWK+ L+ VVA STTEAEY
Sbjct: 1036 DKRRSLTGYVFTIGSCAVSWKATLRHVVAQSTTEAEY 1072


>gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|133711819|gb|ABO36636.1|
            copia LTR rider [Solanum lycopersicum]
          Length = 1307

 Score =  168 bits (426), Expect(2) = 2e-46
 Identities = 111/317 (35%), Positives = 162/317 (51%), Gaps = 11/317 (3%)
 Frame = +1

Query: 1    IFKIKESESVNETPCFKARLVAIGFSQVEGFDFNEIFFKIQND*NHASCCCML*S*T*AV 180
            +FK KE  S  E   +KAR+VA GF+Q EG D+NEIF  +     H S   +L      V
Sbjct: 840  VFKKKEGISPAEGVKYKARVVARGFNQREGVDYNEIFSPVVR---HTSIRVLLA----IV 892

Query: 181  RCQN----------CFLAWHIRENHLHATTSQF*GKS*RKLGFSFEKSLYGLKQSP*QWY 330
              QN           FL   + E         F            +KSLYGLKQSP QWY
Sbjct: 893  AHQNLELEQLDVKTAFLHGELEEEIYMTQPDGFQVPGKENHVCKLKKSLYGLKQSPRQWY 952

Query: 331  KRLNSFMIKSGFAKRNYDSCLYFCGDNIDNVVYLLHYVDDMIIGCKYKEKIVNLKYLIKS 510
            KR +S+M+K G+ + +YD C+Y+   N D+ +YL+ YVDDM+I  K K  I  LK L+ +
Sbjct: 953  KRFDSYMVKLGYTRSSYDCCVYYNRLNDDSFIYLVLYVDDMLIAAKKKYDIQKLKGLLSA 1012

Query: 511  EFNTKDLVPLLESFA*TLIGIHMIILCLYPINIS*RKLFPNFLWTCVSPLVPLLLATFSF 690
            EF  KDL    +     +I                +K+   F  +   P+     A    
Sbjct: 1013 EFEMKDLGAARKILGMEIIRDRERRKLFLSQRSYIQKVLARFGMSSSKPIDTPSAANIHL 1072

Query: 691  LPKY-PKIKNEKKIMANIRYRMAIGSIIYSMIFIRHDIAYSITLLSRFMSNPSRDHWAAL 867
               + P+ + EK+ M+ + Y  A+GS++Y+M+  R D+A++++++SRFM  P R+HW A+
Sbjct: 1073 TAMFAPQSEEEKEYMSRVPYASAVGSLMYAMVCTRPDLAHAVSVVSRFMGQPGREHWQAV 1132

Query: 868  KLLLRYLDGTLNRGLHY 918
            K + RYL GT + GL Y
Sbjct: 1133 KRIFRYLRGTSDVGLIY 1149



 Score = 45.8 bits (107), Expect(2) = 2e-46
 Identities = 22/37 (59%), Positives = 26/37 (70%)
 Frame = +2

Query: 980  DFRKSTTSYFFTLAINCISWKSQLQFVVALSTTEAEY 1090
            D R+S T Y FTL  + +SWK+ LQ  V LSTTEAEY
Sbjct: 1170 DTRRSMTGYVFTLGGSVVSWKATLQPTVTLSTTEAEY 1206


>emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis]
          Length = 1334

 Score =  172 bits (436), Expect(2) = 3e-46
 Identities = 117/324 (36%), Positives = 162/324 (50%), Gaps = 6/324 (1%)
 Frame = +1

Query: 1    IFKIKESESVNETPCFKARLVAIGFSQVEGFDFNEIFFKIQND*NHASC------CCML* 162
            IFK  E     E P +KARLVA GF+Q EG DFNEIF  +     H+S         +L 
Sbjct: 863  IFKRNEGIPDVEPPKYKARLVARGFTQREGVDFNEIFSPVVK---HSSIRILLAMVALLD 919

Query: 163  S*T*AVRCQNCFLAWHIRENHLHATTSQF*GKS*RKLGFSFEKSLYGLKQSP*QWYKRLN 342
                 +  +  FL  ++ E  L A    F  K          KSLYGLKQSP QWY+R +
Sbjct: 920  LELEQMDVKTAFLHGNLEEQILMAQPEGFECKDKEDYVCLLHKSLYGLKQSPRQWYRRFD 979

Query: 343  SFMIKSGFAKRNYDSCLYFCGDNIDNVVYLLHYVDDMIIGCKYKEKIVNLKYLIKSEFNT 522
             FM+  G+ +  YDSC+YF G +   V YLL YVDDM+I  KYK +I  LK L+K+EF  
Sbjct: 980  DFMVSKGYRRSRYDSCVYFGGSDQGGVAYLLLYVDDMLIASKYKSEIERLKNLLKAEFEM 1039

Query: 523  KDLVPLLESFA*TLIGIHMIILCLYPINIS*RKLFPNFLWTCVSPLVPLLLATFSFLPKY 702
            KDL          +I                +K+   F      P+   L   F      
Sbjct: 1040 KDLGNAKRILGMDIIRDRSAGTLFLSQGKYIKKVLERFEMQDCKPVQTPLGPQFKL--SA 1097

Query: 703  PKIKNEKKIMANIRYRMAIGSIIYSMIFIRHDIAYSITLLSRFMSNPSRDHWAALKLLLR 882
                 ++  M    Y  A+GS++Y+M+  R DIAY+++++SR++S P + HW A+K ++R
Sbjct: 1098 ATTSEDESQMNEFPYAQAVGSLMYAMVCTRSDIAYAVSVVSRYLSCPGKVHWNAVKWIMR 1157

Query: 883  YLDGTLNRGLHYYNWTKTFDLVVM 954
            YL G+   GL  Y  TK+  + VM
Sbjct: 1158 YLKGSSTCGL-LYGKTKSDKIEVM 1180



 Score = 41.2 bits (95), Expect(2) = 3e-46
 Identities = 22/37 (59%), Positives = 25/37 (67%)
 Frame = +2

Query: 980  DFRKSTTSYFFTLAINCISWKSQLQFVVALSTTEAEY 1090
            D RKST+ Y F L    ISWKS LQ   ALS+TEAE+
Sbjct: 1192 DRRKSTSRYMFVLNSCLISWKSSLQSGGALSSTEAEF 1228


>emb|CAH66122.1| OSIGBa0146N20.7 [Oryza sativa Indica Group]
          Length = 1335

 Score =  160 bits (405), Expect(2) = 2e-44
 Identities = 107/309 (34%), Positives = 166/309 (53%), Gaps = 10/309 (3%)
 Frame = +1

Query: 1    IFKIKESESVNETPCFKARLVAIGFSQVEGFDFNEIFFKIQND*NHASCCCML*S*T*AV 180
            IFK KE+ S++E P +KARLVA G+SQ+ G D+N++F  +    +  +   ++ S    +
Sbjct: 868  IFKRKEALSLSEPPKYKARLVARGYSQIPGVDYNDVFSPVVKHSSIRTFLSIVASHDLEL 927

Query: 181  R---CQNCFLAWHIRENHLHATTSQF*GKS*RKLGFSFEKSLYGLKQSP*QWYKRLNSFM 351
                 +  FL   + E+        F      K     ++SLYGLKQSP QW KR +SFM
Sbjct: 928  EQLDVKTAFLHGELEEDIYMDQPEGFIVPGKEKYVCKLKRSLYGLKQSPRQWNKRFDSFM 987

Query: 352  IKSGFAKRNYDSCLYFCGDNIDNVVYLLHYVDDMIIGCKYKEKIVNLKYLIKSEFNTKDL 531
            +   F +  YDSC+Y    N  + +YLL YVDDM+I  K K +I  LK L+ SEF+ KDL
Sbjct: 988  LSHSFKRSKYDSCVYIKHVN-GSPIYLLLYVDDMLIAAKSKIEITKLKKLLSSEFDMKDL 1046

Query: 532  VPLLESFA*TLIGIHMI------ILCLYPINIS*RKLFPNFLWTCVSPLVPLLLATFSF- 690
                   A  ++G+ +       +L L   N   +K+   F       +   +   F   
Sbjct: 1047 -----GSAKKILGMEISRDRKSGLLFLSQHNYI-KKVLQRFNMQNAKAVSTPIAPHFKLS 1100

Query: 691  LPKYPKIKNEKKIMANIRYRMAIGSIIYSMIFIRHDIAYSITLLSRFMSNPSRDHWAALK 870
              + P    E + M+ + Y  A+GS++Y+M+  R D++Y+++L+SR+MSNP ++HW AL+
Sbjct: 1101 AAQCPSTDAEIEYMSRVPYSSAVGSLMYAMVCSRPDLSYAMSLVSRYMSNPGKEHWRALQ 1160

Query: 871  LLLRYLDGT 897
             + RYL GT
Sbjct: 1161 WIFRYLRGT 1169



 Score = 47.0 bits (110), Expect(2) = 2e-44
 Identities = 22/37 (59%), Positives = 27/37 (72%)
 Frame = +2

Query: 980  DFRKSTTSYFFTLAINCISWKSQLQFVVALSTTEAEY 1090
            D R+S T Y FT+    +SW++ LQ VVALSTTEAEY
Sbjct: 1196 DRRRSLTGYVFTIGSCAVSWRATLQSVVALSTTEAEY 1232


>gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
            Japonica Group] gi|77549942|gb|ABA92739.1|
            retrotransposon protein, putative, Ty1-copia subclass
            [Oryza sativa Japonica Group]
          Length = 1373

 Score =  159 bits (403), Expect(2) = 3e-44
 Identities = 107/309 (34%), Positives = 165/309 (53%), Gaps = 10/309 (3%)
 Frame = +1

Query: 1    IFKIKESESVNETPCFKARLVAIGFSQVEGFDFNEIFFKIQND*NHASCCCML*S*T*AV 180
            IFK KE  S +E P +KARLVA G+SQ+ G D+N++F  +    +  +   ++ S    +
Sbjct: 866  IFKRKEGLSSSEPPKYKARLVARGYSQIPGVDYNDVFSPVVKHSSIRTFLSIVASHDLEL 925

Query: 181  R---CQNCFLAWHIRENHLHATTSQF*GKS*RKLGFSFEKSLYGLKQSP*QWYKRLNSFM 351
                 +  FL   + E+        F      K     ++SLYGLKQSP QW KR +SFM
Sbjct: 926  EQLDVKTAFLHGELEEDIYMDQPEGFIVPGKEKYVCKLKRSLYGLKQSPRQWNKRFDSFM 985

Query: 352  IKSGFAKRNYDSCLYFCGDNIDNVVYLLHYVDDMIIGCKYKEKIVNLKYLIKSEFNTKDL 531
            +   F +  YDSC+Y    N  + +YLL YVDDM+I  K K +I  LK L+ SEF+ KDL
Sbjct: 986  LSHSFKRSKYDSCVYIKHVN-GSPIYLLLYVDDMLIAAKSKIEITKLKKLLSSEFDMKDL 1044

Query: 532  VPLLESFA*TLIGIHMI------ILCLYPINIS*RKLFPNFLWTCVSPLVPLLLATFSF- 690
                   A  ++G+ +       +L L   N   +K+   F       +   +   F   
Sbjct: 1045 -----GSAKKILGMEISRDRKSGLLFLSQHNYI-KKVLQRFNMQNAKAVSTPIAPHFKLS 1098

Query: 691  LPKYPKIKNEKKIMANIRYRMAIGSIIYSMIFIRHDIAYSITLLSRFMSNPSRDHWAALK 870
              + P I  E + M+ + Y  A+GS++Y+M+  R D++Y+++L+SR+MSNP ++HW A++
Sbjct: 1099 AAQCPSIDAEIEYMSRVPYSSAVGSLMYAMVCSRPDLSYAMSLVSRYMSNPGKEHWRAVQ 1158

Query: 871  LLLRYLDGT 897
             + RYL GT
Sbjct: 1159 WIFRYLRGT 1167



 Score = 47.0 bits (110), Expect(2) = 3e-44
 Identities = 22/37 (59%), Positives = 27/37 (72%)
 Frame = +2

Query: 980  DFRKSTTSYFFTLAINCISWKSQLQFVVALSTTEAEY 1090
            D R+S T Y FT+    +SW++ LQ VVALSTTEAEY
Sbjct: 1194 DRRRSLTGYVFTIGSCAVSWRATLQSVVALSTTEAEY 1230


>gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1333

 Score =  159 bits (403), Expect(2) = 3e-44
 Identities = 107/309 (34%), Positives = 165/309 (53%), Gaps = 10/309 (3%)
 Frame = +1

Query: 1    IFKIKESESVNETPCFKARLVAIGFSQVEGFDFNEIFFKIQND*NHASCCCML*S*T*AV 180
            IFK KE  S +E P +KARLVA G+SQ+ G D+N++F  +    +  +   ++ S    +
Sbjct: 866  IFKRKEGLSSSEPPKYKARLVARGYSQIPGVDYNDVFSPVVKHSSIRTFLSIVASHDLEL 925

Query: 181  R---CQNCFLAWHIRENHLHATTSQF*GKS*RKLGFSFEKSLYGLKQSP*QWYKRLNSFM 351
                 +  FL   + E+        F      K     ++SLYGLKQSP QW KR +SFM
Sbjct: 926  EQLDVKTAFLHGELEEDIYMDQPEGFIVPGKEKYVCKLKRSLYGLKQSPRQWNKRFDSFM 985

Query: 352  IKSGFAKRNYDSCLYFCGDNIDNVVYLLHYVDDMIIGCKYKEKIVNLKYLIKSEFNTKDL 531
            +   F +  YDSC+Y    N  + +YLL YVDDM+I  K K +I  LK L+ SEF+ KDL
Sbjct: 986  LSHSFKRSKYDSCVYIKHVN-GSPIYLLLYVDDMLIAAKSKIEITKLKKLLSSEFDMKDL 1044

Query: 532  VPLLESFA*TLIGIHMI------ILCLYPINIS*RKLFPNFLWTCVSPLVPLLLATFSF- 690
                   A  ++G+ +       +L L   N   +K+   F       +   +   F   
Sbjct: 1045 -----GSAKKILGMEISRDRKSGLLFLSQHNYI-KKVLQRFNMQNAKAVSTPIAPHFKLS 1098

Query: 691  LPKYPKIKNEKKIMANIRYRMAIGSIIYSMIFIRHDIAYSITLLSRFMSNPSRDHWAALK 870
              + P I  E + M+ + Y  A+GS++Y+M+  R D++Y+++L+SR+MSNP ++HW A++
Sbjct: 1099 AAQCPSIDAEIEYMSRVPYSSAVGSLMYAMVCSRPDLSYAMSLVSRYMSNPGKEHWRAVQ 1158

Query: 871  LLLRYLDGT 897
             + RYL GT
Sbjct: 1159 WIFRYLRGT 1167



 Score = 47.0 bits (110), Expect(2) = 3e-44
 Identities = 22/37 (59%), Positives = 27/37 (72%)
 Frame = +2

Query: 980  DFRKSTTSYFFTLAINCISWKSQLQFVVALSTTEAEY 1090
            D R+S T Y FT+    +SW++ LQ VVALSTTEAEY
Sbjct: 1194 DRRRSLTGYVFTIGSCAVSWRATLQSVVALSTTEAEY 1230


>gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1333

 Score =  156 bits (394), Expect(2) = 3e-43
 Identities = 106/309 (34%), Positives = 164/309 (53%), Gaps = 10/309 (3%)
 Frame = +1

Query: 1    IFKIKESESVNETPCFKARLVAIGFSQVEGFDFNEIFFKIQND*NHASCCCML*S*T*AV 180
            IFK KE  S +E P +KARLVA G+SQ+ G D+N++F  +    +  +   ++ S    +
Sbjct: 866  IFKRKEGLSSSEPPKYKARLVARGYSQIPGVDYNDVFSPVVKHSSIRTFLSIVASHDLEL 925

Query: 181  R---CQNCFLAWHIRENHLHATTSQF*GKS*RKLGFSFEKSLYGLKQSP*QWYKRLNSFM 351
                 +  FL   + E+        F      K     ++SLYGLKQSP QW KR +SFM
Sbjct: 926  EQLDVKTAFLHGELEEDIYMDQPEGFIVPGKEKYVCKLKRSLYGLKQSPRQWNKRFDSFM 985

Query: 352  IKSGFAKRNYDSCLYFCGDNIDNVVYLLHYVDDMIIGCKYKEKIVNLKYLIKSEFNTKDL 531
            +   F +  YDSC+Y    N  + +YLL YVDDM+I  K K +I  LK L+ SEF+ KDL
Sbjct: 986  LSHSFKRSKYDSCVYIKHVN-GSPIYLLLYVDDMLIAAKSKIEITKLKKLLSSEFDMKDL 1044

Query: 532  -----VPLLESFA*TLIGIHMIILCLYPINIS*RKLFPN--FLWTCVSPLVPLLLATFSF 690
                 + ++E       G+  +    Y   +  R    N   + T ++P   L  A    
Sbjct: 1045 GSAKKILVMEISRDRKSGLLFLSQHNYIKKVLQRFNMQNAKAVSTPIAPHFKLSAA---- 1100

Query: 691  LPKYPKIKNEKKIMANIRYRMAIGSIIYSMIFIRHDIAYSITLLSRFMSNPSRDHWAALK 870
              + P    E + M+ + Y  A+GS++Y+M+  R D++Y+++L+SR+MSNP ++HW  ++
Sbjct: 1101 --QCPSTDAEIEYMSRVPYSSAVGSLMYAMVCSRPDLSYAMSLVSRYMSNPGKEHWRVVQ 1158

Query: 871  LLLRYLDGT 897
             + RYL GT
Sbjct: 1159 WIFRYLRGT 1167



 Score = 47.0 bits (110), Expect(2) = 3e-43
 Identities = 22/37 (59%), Positives = 27/37 (72%)
 Frame = +2

Query: 980  DFRKSTTSYFFTLAINCISWKSQLQFVVALSTTEAEY 1090
            D R+S T Y FT+    +SW++ LQ VVALSTTEAEY
Sbjct: 1194 DRRRSLTGYVFTIGSCAVSWRATLQSVVALSTTEAEY 1230


>gb|AAT44282.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1243

 Score =  152 bits (384), Expect(2) = 8e-42
 Identities = 109/320 (34%), Positives = 165/320 (51%), Gaps = 14/320 (4%)
 Frame = +1

Query: 1    IFKIKESESVNETPCFKARLVAIGFSQVEGFDFNEIFFKIQND*NHASCCCML*S*T*-- 174
            IFK KE  S ++   +KARLVA G+SQ+ G DFN++F  +     H+S   +L       
Sbjct: 837  IFKRKEGMSPSDEARYKARLVAKGYSQIPGIDFNDVFSPVVK---HSSIRTLLGIVAMHD 893

Query: 175  ----AVRCQNCFLAWHIRENHLHATTSQF*GKS*RKLGFSFEKSLYGLKQSP*QWYKRLN 342
                 +  +  FL   + E+        F       L    +KSLYGLKQSP QWYKR +
Sbjct: 894  YELEQMNVKTAFLHGELEEDIYMEQPEGFVVPGKENLVCRLKKSLYGLKQSPRQWYKRFD 953

Query: 343  SFMIKSGFAKRNYDSCLYFCGDNID-NVVYLLHYVDDMIIGCKYKEKIVNLKYLIKSEFN 519
            SFM+   F   NYDSC+Y     +D +V+YLL YVDDM+I  K K +I  LK  + SEF 
Sbjct: 954  SFMLSQKFRISNYDSCVYL--KVVDGSVIYLLLYVDDMLIAAKDKSEIEKLKAQLSSEFE 1011

Query: 520  TKDLVPLLESFA*TLIGI------HMIILCLYPINIS*RKLFPNFLWTCVSPLVPLLLAT 681
             KDL       A  ++G+      H   L L        K+   F      P+   L A 
Sbjct: 1012 MKDL-----GAAKKILGMEITRERHSGKLYLSQKGYI-EKVLRRFNMHDAKPVSTPLAAH 1065

Query: 682  FSFLPKY-PKIKNEKKIMANIRYRMAIGSIIYSMIFIRHDIAYSITLLSRFMSNPSRDHW 858
            F       P    + + M+ + Y  A+GS++Y+M+  R D+++++++++R+M+NP ++HW
Sbjct: 1066 FRLSSDLCPLSDYDIEYMSRVPYSSAVGSLMYAMVCCRPDLSHALSVVNRYMANPGKEHW 1125

Query: 859  AALKLLLRYLDGTLNRGLHY 918
             A++ + RYL GT +  L +
Sbjct: 1126 KAVQWIFRYLRGTSSACLQF 1145



 Score = 46.2 bits (108), Expect(2) = 8e-42
 Identities = 22/37 (59%), Positives = 26/37 (70%)
 Frame = +2

Query: 980  DFRKSTTSYFFTLAINCISWKSQLQFVVALSTTEAEY 1090
            D R+S T Y FT+    +SWK+ LQ  VALSTTEAEY
Sbjct: 1165 DRRRSITGYVFTIGGCAVSWKASLQATVALSTTEAEY 1201


>emb|CAJ86151.1| H0413E07.4 [Oryza sativa Indica Group]
          Length = 1205

 Score =  152 bits (384), Expect(2) = 8e-42
 Identities = 105/313 (33%), Positives = 162/313 (51%), Gaps = 7/313 (2%)
 Frame = +1

Query: 1    IFKIKESESVNETPCFKARLVAIGFSQVEGFDFNEIFFKIQND*NHASCCCML*S*T*-- 174
            IFK KE  S ++   +KARLVA G+SQ+ G DFN+IF  +     H+S   +L       
Sbjct: 791  IFKRKEGMSPSDEARYKARLVAKGYSQIPGIDFNDIFSPVVK---HSSIRTLLSIVAMHD 847

Query: 175  ----AVRCQNCFLAWHIRENHLHATTSQF*GKS*RKLGFSFEKSLYGLKQSP*QWYKRLN 342
                 +  +  FL   + E+        F       L    +KSLYGLKQSP QWYKR +
Sbjct: 848  YELEQMDVKTAFLHGELEEDIYMEQPEGFVVPGKENLVCRLKKSLYGLKQSPRQWYKRFD 907

Query: 343  SFMIKSGFAKRNYDSCLYFCGDNID-NVVYLLHYVDDMIIGCKYKEKIVNLKYLIKSEFN 519
            SFM+   F + NYDSC+Y     +D + +YLL YVDDM+I  K K +I  LK  + SEF 
Sbjct: 908  SFMLSQKFRRSNYDSCVYL--KVVDGSAIYLLLYVDDMLIAAKDKSEIAKLKAQLSSEFE 965

Query: 520  TKDLVPLLESFA*TLIGIHMIILCLYPINIS*RKLFPNFLWTCVSPLVPLLLATFSFLPK 699
             KDL       A  ++G+ +            R+   + L+      +  +L  F+    
Sbjct: 966  MKDL-----GAAKKILGMEIT-----------RERHSDKLYLSQKGYIEKVLRRFNMHDA 1009

Query: 700  YPKIKNEKKIMANIRYRMAIGSIIYSMIFIRHDIAYSITLLSRFMSNPSRDHWAALKLLL 879
             P   + +     + Y  A+GS++Y+MI  R D++++++++SR+M NP ++HW A++ + 
Sbjct: 1010 KPIYVHSQ---IYVPYSSAVGSLMYAMICSRPDLSHALSVVSRYMVNPGKEHWKAVQWIF 1066

Query: 880  RYLDGTLNRGLHY 918
            RYL GT +  L +
Sbjct: 1067 RYLHGTSSACLQF 1079



 Score = 46.2 bits (108), Expect(2) = 8e-42
 Identities = 22/37 (59%), Positives = 26/37 (70%)
 Frame = +2

Query: 980  DFRKSTTSYFFTLAINCISWKSQLQFVVALSTTEAEY 1090
            D R+S T Y FT+    +SWK+ LQ  VALSTTEAEY
Sbjct: 1099 DRRRSLTGYVFTIGGCAVSWKASLQATVALSTTEAEY 1135


>emb|CAJ86192.1| H0306F03.15 [Oryza sativa Indica Group]
          Length = 1037

 Score =  152 bits (384), Expect(2) = 8e-42
 Identities = 105/313 (33%), Positives = 162/313 (51%), Gaps = 7/313 (2%)
 Frame = +1

Query: 1    IFKIKESESVNETPCFKARLVAIGFSQVEGFDFNEIFFKIQND*NHASCCCML*S*T*-- 174
            IFK KE  S ++   +KARLVA G+SQ+ G DFN+IF  +     H+S   +L       
Sbjct: 623  IFKRKEGMSPSDEARYKARLVAKGYSQIPGIDFNDIFSPVVK---HSSIRTLLSIVAMHD 679

Query: 175  ----AVRCQNCFLAWHIRENHLHATTSQF*GKS*RKLGFSFEKSLYGLKQSP*QWYKRLN 342
                 +  +  FL   + E+        F       L    +KSLYGLKQSP QWYKR +
Sbjct: 680  YELEQMDVKTAFLHGELEEDIYMEQPEGFVVPGKENLVCRLKKSLYGLKQSPRQWYKRFD 739

Query: 343  SFMIKSGFAKRNYDSCLYFCGDNID-NVVYLLHYVDDMIIGCKYKEKIVNLKYLIKSEFN 519
            SFM+   F + NYDSC+Y     +D + +YLL YVDDM+I  K K +I  LK  + SEF 
Sbjct: 740  SFMLSQKFRRSNYDSCVYL--KVVDGSAIYLLLYVDDMLIAAKDKSEIAKLKAQLSSEFE 797

Query: 520  TKDLVPLLESFA*TLIGIHMIILCLYPINIS*RKLFPNFLWTCVSPLVPLLLATFSFLPK 699
             KDL       A  ++G+ +            R+   + L+      +  +L  F+    
Sbjct: 798  MKDL-----GAAKKILGMEIT-----------RERHSDKLYLSQKGYIEKVLRRFNMHDA 841

Query: 700  YPKIKNEKKIMANIRYRMAIGSIIYSMIFIRHDIAYSITLLSRFMSNPSRDHWAALKLLL 879
             P   + +     + Y  A+GS++Y+MI  R D++++++++SR+M NP ++HW A++ + 
Sbjct: 842  KPIYVHSQ---IYVPYSSAVGSLMYAMICSRPDLSHALSVVSRYMVNPGKEHWKAVQWIF 898

Query: 880  RYLDGTLNRGLHY 918
            RYL GT +  L +
Sbjct: 899  RYLHGTSSACLQF 911



 Score = 46.2 bits (108), Expect(2) = 8e-42
 Identities = 22/37 (59%), Positives = 26/37 (70%)
 Frame = +2

Query: 980  DFRKSTTSYFFTLAINCISWKSQLQFVVALSTTEAEY 1090
            D R+S T Y FT+    +SWK+ LQ  VALSTTEAEY
Sbjct: 931  DRRRSLTGYVFTIGGCAVSWKASLQATVALSTTEAEY 967


>gb|AAR87163.1| putative polyprotein [Oryza sativa Japonica Group]
            gi|53370655|gb|AAU89150.1| integrase core domain
            containing protein [Oryza sativa Japonica Group]
            gi|108710286|gb|ABF98081.1| retrotransposon protein,
            putative, Ty1-copia subclass [Oryza sativa Japonica
            Group]
          Length = 1322

 Score =  152 bits (384), Expect(2) = 2e-41
 Identities = 102/313 (32%), Positives = 157/313 (50%), Gaps = 7/313 (2%)
 Frame = +1

Query: 1    IFKIKESESVNETPCFKARLVAIGFSQVEGFDFNEIFFKIQND*NHASCCCML*S*T*-- 174
            IFK KE  S +E P FK RLVA GFSQ+ G D+N++F  +     H+S        T   
Sbjct: 855  IFKRKEGLSPSEPPRFKVRLVAKGFSQIAGVDYNDVFSPVVK---HSSIRTFFSIVTMHD 911

Query: 175  ----AVRCQNCFLAWHIRENHLHATTSQF*GKS*RKLGFSFEKSLYGLKQSP*QWYKRLN 342
                 +  +  FL   + E         F            ++SLYGLKQSP QWYKR +
Sbjct: 912  LELEQLDVKTTFLHGELEEEIYMDQPEGFIVPGKEDYVCKLKRSLYGLKQSPRQWYKRFD 971

Query: 343  SFMIKSGFAKRNYDSCLYFCGDNIDNVVYLLHYVDDMIIGCKYKEKIVNLKYLIKSEFNT 522
            SFM+  GF +  +DSC+Y    N  + +YLL YVDDM+I  K KE+I  LK  + SEF+ 
Sbjct: 972  SFMLSHGFKRSEFDSCVYIKFVN-GSPIYLLLYVDDMLIAAKSKEQITTLKKQLSSEFDM 1030

Query: 523  KDLVPLLESFA*TLIGIHMIILCLYPINIS*RKLFPNFLWTCVSPLVPLLLATFSFLP-K 699
            KDL    +     +       L         +K+   F      P+   +   F     +
Sbjct: 1031 KDLGAAKKILGMEITRDRNSGLLFLSQQSYIKKVLQRFNMHDAKPVSTPIAPHFKLSALQ 1090

Query: 700  YPKIKNEKKIMANIRYRMAIGSIIYSMIFIRHDIAYSITLLSRFMSNPSRDHWAALKLLL 879
                  + + M+ + Y  A+GS++Y+M+    D++++++L+SR+M+NP ++HW A++ + 
Sbjct: 1091 CASTDEDVEYMSRVPYSSAVGSLMYAMVCSWPDLSHAMSLVSRYMANPGKEHWKAVQWIF 1150

Query: 880  RYLDGTLNRGLHY 918
            RYL GT +  L +
Sbjct: 1151 RYLRGTADACLKF 1163



 Score = 45.1 bits (105), Expect(2) = 2e-41
 Identities = 22/37 (59%), Positives = 26/37 (70%)
 Frame = +2

Query: 980  DFRKSTTSYFFTLAINCISWKSQLQFVVALSTTEAEY 1090
            D R+S T Y FT+    +SWK+ LQ VVA STTEAEY
Sbjct: 1183 DKRRSLTGYVFTIGSCAVSWKATLQPVVAQSTTEAEY 1219


>gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
            Japonica Group] gi|77548751|gb|ABA91548.1|
            retrotransposon protein, putative, Ty1-copia subclass
            [Oryza sativa Japonica Group]
          Length = 2340

 Score =  155 bits (392), Expect(2) = 2e-41
 Identities = 108/320 (33%), Positives = 166/320 (51%), Gaps = 14/320 (4%)
 Frame = +1

Query: 1    IFKIKESESVNETPCFKARLVAIGFSQVEGFDFNEIFFKIQND*NHASCCCML*S*T*-- 174
            IFK KE  S ++   +KARL+A G+SQ+ G DFN++F  +     H+S   +L       
Sbjct: 1072 IFKRKEGISSSDEARYKARLIAKGYSQIPGIDFNDVFSPVVK---HSSIRTLLSIVAMHD 1128

Query: 175  ----AVRCQNCFLAWHIRENHLHATTSQF*GKS*RKLGFSFEKSLYGLKQSP*QWYKRLN 342
                 +  +  FL   + E+        F       L    +KSLYGLKQSP QWYKR +
Sbjct: 1129 YELEQMDVKTAFLHGELEEDIYMEQPKGFVVPGKENLVCRLKKSLYGLKQSPRQWYKRFD 1188

Query: 343  SFMIKSGFAKRNYDSCLYFCGDNID-NVVYLLHYVDDMIIGCKYKEKIVNLKYLIKSEFN 519
            SFM+   F + NYDSC+Y     +D + +YLL YVDDM+I  K K +I  LK  + SEF 
Sbjct: 1189 SFMLSQKFRRSNYDSCVYL--KVVDGSAIYLLLYVDDMLIAAKDKSEIAKLKAQLSSEFE 1246

Query: 520  TKDLVPLLESFA*TLIGI------HMIILCLYPINIS*RKLFPNFLWTCVSPLVPLLLAT 681
             KDL       A  ++G+      H   L L        K+   F      P+   L A 
Sbjct: 1247 MKDL-----GAAKKILGMEITRKRHSFKLYLSQKGYI-EKVLRRFNMHDAKPVSTPLAAH 1300

Query: 682  FSFLPKY-PKIKNEKKIMANIRYRMAIGSIIYSMIFIRHDIAYSITLLSRFMSNPSRDHW 858
            F       P+   + + M+ + Y  A+GS++Y+M+  R D++++++++SR+M+NP ++HW
Sbjct: 1301 FRLSSDLCPQSDYDIEYMSRVPYSSAVGSLMYAMVCSRPDLSHALSVVSRYMANPGKEHW 1360

Query: 859  AALKLLLRYLDGTLNRGLHY 918
             A++ + RYL GT +  L +
Sbjct: 1361 KAVQWIFRYLRGTSSACLQF 1380



 Score = 41.6 bits (96), Expect(2) = 2e-41
 Identities = 20/37 (54%), Positives = 24/37 (64%)
 Frame = +2

Query: 980  DFRKSTTSYFFTLAINCISWKSQLQFVVALSTTEAEY 1090
            D  +S   Y FT+    +SWK+ LQ  VALSTTEAEY
Sbjct: 1400 DRGRSLAGYVFTIGGCAVSWKASLQATVALSTTEAEY 1436


>gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1241

 Score =  150 bits (380), Expect(2) = 3e-41
 Identities = 109/329 (33%), Positives = 168/329 (51%), Gaps = 23/329 (6%)
 Frame = +1

Query: 1    IFKIKESESVNETPCFKARLVAIGFSQVEGFDFNEIFFKIQND*NHASCCCML*S*T*-- 174
            IFK KE  S ++   +KARLVA G+SQ+ G DFN++F  +     H+S   +L       
Sbjct: 774  IFKRKEGMSPSDEARYKARLVAKGYSQIPGIDFNDVFSPVVK---HSSIRTLLSIVAMHD 830

Query: 175  ----AVRCQNCFLAWHIRENHLHATTSQF*GKS*RKLGFSFEKSLYGLKQSP*QWYKRLN 342
                 +  +  FL   + E+        F       L    +KSLYGLKQSP QWYKR +
Sbjct: 831  YELEQMDVKTAFLHGELEEDIYMEQPEGFVVPGKENLVCRLKKSLYGLKQSPRQWYKRFD 890

Query: 343  SFMIKSGFAKRNYDSCLYFCGDNID-NVVYLLHYVDDMIIGCKYKEKIVNLKYLIKSEFN 519
            SFM+   F + NYDSC+Y     +D + +YLL YVDDM+I  K K +I  LK  + SEF 
Sbjct: 891  SFMLSQKFRRSNYDSCVYL--KVVDGSAIYLLLYVDDMLIAAKDKSEIAKLKAQLSSEFE 948

Query: 520  TKDLVPLLESFA*TLIGIHM----------------IILCLYPINIS*RKLFPNFLWTCV 651
             KDL       A  ++G+ +                I   L+  N+   KL        V
Sbjct: 949  MKDL-----GAAKKILGMEITRERHSGKLYLSQKCYIEKVLHRFNMHDAKL--------V 995

Query: 652  SPLVPLLLATFSFLPKYPKIKNEKKIMANIRYRMAIGSIIYSMIFIRHDIAYSITLLSRF 831
            S L+       S L   P+   + + M+ + Y  A+ S++Y+M+  R D++++++++SR+
Sbjct: 996  STLLAAHFRLSSDL--CPQSAYDIEYMSRVPYSSAVSSLMYAMVCSRPDLSHALSVVSRY 1053

Query: 832  MSNPSRDHWAALKLLLRYLDGTLNRGLHY 918
            M+NP ++HW A++ + RYL GT +  L +
Sbjct: 1054 MANPGKEHWKAVQWIFRYLRGTSSACLQF 1082



 Score = 45.8 bits (107), Expect(2) = 3e-41
 Identities = 22/37 (59%), Positives = 26/37 (70%)
 Frame = +2

Query: 980  DFRKSTTSYFFTLAINCISWKSQLQFVVALSTTEAEY 1090
            D R+S T Y FT+    +SWK+ LQ  VALSTTEAEY
Sbjct: 1102 DRRRSLTGYVFTVGGCAVSWKASLQATVALSTTEAEY 1138


>dbj|BAB09923.1| copia-like retrotransposable element [Arabidopsis thaliana]
          Length = 1342

 Score =  147 bits (371), Expect(2) = 5e-41
 Identities = 116/332 (34%), Positives = 166/332 (50%), Gaps = 26/332 (7%)
 Frame = +1

Query: 1    IFKIKESESVNETPCFKARLVAIGFSQVEGFDFNEIFFKIQND*NHASCCCML*S*T*AV 180
            IFK K      E P +KARLVA GFSQ EG D+ EIF  +     H S   +L   +  V
Sbjct: 872  IFKRKAGIPGVEPPRYKARLVAKGFSQREGIDYQEIFSPVVK---HVSIRYLL---SIVV 925

Query: 181  R---------CQNCFLAWHIRENHLHATTSQF*GKS*RKLGFSFEKSLYGLKQSP*QWYK 333
            +          +  FL  ++ E  L +    +  +   +     +KSLYGLKQSP QW +
Sbjct: 926  QFDMELEQLDVKTAFLHGNLDEYILMSQPEGYEDEDSTEKVCLLKKSLYGLKQSPRQWNQ 985

Query: 334  RLNSFMIKSGFAKRNYDSCLYFCGDNIDNVVYLLHYVDDMIIGCKYKEKIVNLKYLIKSE 513
            R +SFMI SG+ +  Y+ C+Y    N  + +YLL YVDDM+I  + K++I  LK  +  E
Sbjct: 986  RFDSFMINSGYQRSKYNPCVYTQQLNDGSYIYLLLYVDDMLIASQNKDQIQKLKESLNRE 1045

Query: 514  FNTKDLVPLLESFA*TLIGIHMIILCLYPINIS*RKLFPNFLWTCVSPLVPLLLATFSF- 690
            F  KDL P     A  ++G+ +            R      L    S  V  +L  F   
Sbjct: 1046 FEMKDLGP-----ARKILGMEIT-----------RNREQGILDLSQSEYVAGVLRAFGMD 1089

Query: 691  --------LPKYPKIK--NEKKI------MANIRYRMAIGSIIYSMIFIRHDIAYSITLL 822
                    L  + K++  NEK +      M  + Y  AIGSI+YSMI  R D+AY + ++
Sbjct: 1090 QSKVSQTPLGAHFKLRAANEKTLARDAEYMKLVPYPNAIGSIMYSMIGSRPDLAYPVGVV 1149

Query: 823  SRFMSNPSRDHWAALKLLLRYLDGTLNRGLHY 918
            SRFMS PS++HW A+K ++RY+ GT +  L +
Sbjct: 1150 SRFMSKPSKEHWQAVKWVMRYMKGTQDTCLRF 1181



 Score = 48.5 bits (114), Expect(2) = 5e-41
 Identities = 25/37 (67%), Positives = 27/37 (72%)
 Frame = +2

Query: 980  DFRKSTTSYFFTLAINCISWKSQLQFVVALSTTEAEY 1090
            D R+S T + FT   N ISWKS LQ VVALSTTEAEY
Sbjct: 1202 DRRRSITGFVFTAGGNTISWKSGLQRVVALSTTEAEY 1238


>gb|AAD19773.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1335

 Score =  142 bits (359), Expect(2) = 4e-40
 Identities = 105/297 (35%), Positives = 144/297 (48%), Gaps = 4/297 (1%)
 Frame = +1

Query: 34   ETPCFKARLVAIGFSQVEGFDFNEIFFKIQND*NHASCCCML*S*T*AVR---CQNCFLA 204
            E P F ARLVA GF+Q EG D+NEIF  +    +      M+      ++    +  FL 
Sbjct: 876  EAPRFIARLVAKGFTQKEGVDYNEIFSPVVKHVSIRYLLSMVVHYNMELQQMDVKTAFLH 935

Query: 205  WHIRENHLHATTSQF*GKS*RKLGFSFEKSLYGLKQSP*QWYKRLNSFMIKSGFAKRNYD 384
              + E    A    F  K         ++SLYGLKQSP QW  R + FM    + +  YD
Sbjct: 936  GFLEEEIYMAQPEGFEIKRGSNKVCLLKRSLYGLKQSPRQWNLRFDEFMRGIKYTRSAYD 995

Query: 385  SCLYFCGDNIDNVVYLLHYVDDMIIGCKYKEKIVNLKYLIKSEFNTKDLVPLLESFA*TL 564
            SC+YF   N D  +YLL YVDDM+I    K ++  LK L+  EF  KDL    +     +
Sbjct: 996  SCVYFKKCNGDTYIYLLLYVDDMLIASANKSEVNELKQLLSREFEMKDLGDAKKILGMEI 1055

Query: 565  IGIHMIILCLYPINIS*RKLFPNFLWTCVSPLVPLLLATFSFLPKYPKIKNEK-KIMANI 741
                   L         +K+  +F      P+   L   F       K   E+ + M  +
Sbjct: 1056 SRDRDAGLLTLSQEGYVKKVLRSFQMDNAKPVSTPLGIHFKLKAATDKEYEEQFERMKIV 1115

Query: 742  RYRMAIGSIIYSMIFIRHDIAYSITLLSRFMSNPSRDHWAALKLLLRYLDGTLNRGL 912
             Y   IGSI+YSMI  R D+AYS+ ++SRFMS P +DHW A+K +LRY+ GT  + L
Sbjct: 1116 PYANTIGSIMYSMIGTRPDLAYSLGVISRFMSKPLKDHWQAVKWVLRYMRGTEKKKL 1172



 Score = 50.1 bits (118), Expect(2) = 4e-40
 Identities = 24/37 (64%), Positives = 29/37 (78%)
 Frame = +2

Query: 980  DFRKSTTSYFFTLAINCISWKSQLQFVVALSTTEAEY 1090
            D R+S T Y FT+  N ISWKS+LQ VVA+S+TEAEY
Sbjct: 1195 DTRRSITGYVFTVGGNTISWKSKLQKVVAISSTEAEY 1231


>gb|AAL91607.1|AC099400_13 Putative pol polyprotein [Oryza sativa Japonica Group]
            gi|18542925|gb|AAL75759.1| Putative pol polyprotein
            [Oryza sativa Japonica Group] gi|31429763|gb|AAP51772.1|
            retrotransposon protein, putative, Ty1-copia subclass
            [Oryza sativa Japonica Group]
          Length = 1005

 Score =  148 bits (373), Expect(2) = 4e-40
 Identities = 109/340 (32%), Positives = 170/340 (50%), Gaps = 34/340 (10%)
 Frame = +1

Query: 1    IFKIKESESVNETPCFKARLVAIGFSQVEGFDFNEIFFKIQND*NHASCCCML*S*T*AV 180
            IFK KE  S +E P FKA+LVA GFSQ+ G D+N++F  +     H+S           +
Sbjct: 539  IFKRKEGLSPSEPPRFKAKLVAKGFSQIAGVDYNDVFSPVVK---HSS-----------I 584

Query: 181  RCQNCFLAWHIRE-NHLHATTSQF*GKS*RKL------GF----------SFEKSLYGLK 309
            R     +A H  E   L   T+   G+   ++      GF            ++S YGLK
Sbjct: 585  RTFFSIVAMHDLELEQLDVKTAFLHGELEEEIYMDQPEGFIVPGKEGYVCKLKRSFYGLK 644

Query: 310  QSP*QWYKRLNSFMIKSGFAKRNYDSCLYFCGDNIDNVVYLLHYVDDMIIGCKYKEKIVN 489
            QSP QWYKR + FM+  GF +  +DSC+Y    N  + +YLL YVDDM+I  K KE+I  
Sbjct: 645  QSPRQWYKRFDLFMLSHGFKRSEFDSCVYIKFVN-GSPIYLL-YVDDMLIAAKSKEQITT 702

Query: 490  LKYLIKSEFNTKDLVPLLESFA*TLIGIHMIILCLYPINIS*RKLFPNFLWTCVSPLVPL 669
            LK  + SEF+ KDL       A  ++G+ +            R      L+      +  
Sbjct: 703  LKKQLSSEFDMKDL-----GAAKKILGMEIT-----------RDRNSGLLFLSQQSYIKN 746

Query: 670  LLATFSF-------LPKYPKIK----------NEKKIMANIRYRMAIGSIIYSMIFIRHD 798
            +L  F+        +P  P  K           + + M+ + Y  A+GS++Y+M+  R D
Sbjct: 747  VLQRFNMHDAKLVSIPIAPHFKLSVLQCASTDEDVEYMSRVPYSSAVGSLMYAMVCSRPD 806

Query: 799  IAYSITLLSRFMSNPSRDHWAALKLLLRYLDGTLNRGLHY 918
            ++++++L+SR+M+NP ++HW A++ + RYL GT +  L +
Sbjct: 807  LSHAMSLVSRYMANPGKEHWKAVQWIFRYLRGTADACLKF 846



 Score = 44.7 bits (104), Expect(2) = 4e-40
 Identities = 22/37 (59%), Positives = 27/37 (72%)
 Frame = +2

Query: 980  DFRKSTTSYFFTLAINCISWKSQLQFVVALSTTEAEY 1090
            D R+S T Y FT++   +SWK+ LQ VVA STTEAEY
Sbjct: 866  DKRRSLTGYVFTISSCAMSWKATLQPVVAQSTTEAEY 902


>gb|AAT44257.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1211

 Score =  147 bits (372), Expect(2) = 6e-40
 Identities = 105/320 (32%), Positives = 164/320 (51%), Gaps = 14/320 (4%)
 Frame = +1

Query: 1    IFKIKESESVNETPCFKARLVAIGFSQVEGFDFNEIFFKIQND*NHASCCCML*S*T*-- 174
            IFK K+  S ++   +KARLVA G+SQ+ G DFN++F  +     H+S   +L       
Sbjct: 744  IFKRKKGMSPSDEARYKARLVAKGYSQIPGIDFNDVFSPVLK---HSSIRTLLSIVAVHD 800

Query: 175  ----AVRCQNCFLAWHIRENHLHATTSQF*GKS*RKLGFSFEKSLYGLKQSP*QWYKRLN 342
                 +  +  FL   + E+        F       L +  +KSLYGLKQSP QWYKR +
Sbjct: 801  YELEQMDVKTAFLHGELEEDIYMEQPEGFVVPGKENLVYRLKKSLYGLKQSPRQWYKRFD 860

Query: 343  SFMIKSGFAKRNYDSCLYFCGDNID-NVVYLLHYVDDMIIGCKYKEKIVNLKYLIKSEFN 519
            SFM    F + NYDSC+Y     +D + +YLL YVDDM+I  K K +I  LK  + SEF 
Sbjct: 861  SFMFSQKFRRSNYDSCVYL--KVVDGSSIYLLLYVDDMLIAAKDKSEIEKLKAQLSSEFE 918

Query: 520  TKDLVPLLESFA*TLIGI------HMIILCLYPINIS*RKLFPNFLWTCVSPLVPLLLAT 681
             KDL       A  ++G+      H   L L        K+   F      P+   L A 
Sbjct: 919  MKDL-----GAAKKILGMEITRERHSGKLYLSQKGYI-EKVLRRFNMHDAKPVSTPLAAH 972

Query: 682  FSFLPKY-PKIKNEKKIMANIRYRMAIGSIIYSMIFIRHDIAYSITLLSRFMSNPSRDHW 858
            F       P+   + + M+ + Y   +GS++Y+M+  R D++++++++SR+M+NP ++HW
Sbjct: 973  FRLSSDLCPQSDYDIEYMSRVPYLSVVGSLMYAMVCSRLDLSHALSVVSRYMANPGKEHW 1032

Query: 859  AALKLLLRYLDGTLNRGLHY 918
              ++ + +YL GT +  L +
Sbjct: 1033 KVVQWIFKYLRGTSSACLQF 1052



 Score = 44.7 bits (104), Expect(2) = 6e-40
 Identities = 21/37 (56%), Positives = 25/37 (67%)
 Frame = +2

Query: 980  DFRKSTTSYFFTLAINCISWKSQLQFVVALSTTEAEY 1090
            D R+S T Y FT+    +SWK+ LQ  VALSTTE EY
Sbjct: 1072 DRRRSLTGYVFTIGGCAVSWKASLQATVALSTTEVEY 1108


>emb|CAB75481.1| copia-like polyprotein [Arabidopsis thaliana]
          Length = 1363

 Score =  148 bits (374), Expect(2) = 7e-40
 Identities = 107/339 (31%), Positives = 163/339 (48%), Gaps = 33/339 (9%)
 Frame = +1

Query: 1    IFKIKESESVNETPCFKARLVAIGFSQVEGFDFNEIFFKIQND*NHASCCCML*S*T*AV 180
            I+K K+     E P FKARLVA G++Q EG D++EIF  +     H S   +L     ++
Sbjct: 893  IYKYKQGIPGVEEPRFKARLVAKGYAQREGVDYHEIFAPVVK---HVSIRILL-----SI 944

Query: 181  RCQNCFLAWHIRENHLHATTSQF*GKS*RKLGFS----------------FEKSLYGLKQ 312
              Q      ++    L   T+   G+   K+                     KSLYGLKQ
Sbjct: 945  VAQE-----NLELEQLDVKTAFLHGELKEKIYMMPPEGCESLFKENEVCLLNKSLYGLKQ 999

Query: 313  SP*QWYKRLNSFMIKSGFAKRNYDSCLYFCGDNIDNVVYLLHYVDDMIIGCKYKEKIVNL 492
            +P QW ++ N +M + GF + +YDSC Y    + D+ +YLL YVDDM++     + I  L
Sbjct: 1000 APRQWNEKFNHYMTEIGFKRSDYDSCAYTKKLSDDSTMYLLFYVDDMLVAANNMQAIDAL 1059

Query: 493  KYLIKSEFNTKDLVPLLESFA*TLIGIHMIILCLYPINIS*RKLFPNFLWTCVSPLVPLL 672
            K  +  +F  KDL       A  ++GI +II                 LW      +  +
Sbjct: 1060 KKELSIKFEMKDL-----GAAKKILGIEIII-----------DREAGVLWLSQESYLNKV 1103

Query: 673  LATFSFLPKYP-----------------KIKNEKKIMANIRYRMAIGSIIYSMIFIRHDI 801
            L TF+ L   P                 K+  E++ M ++ Y  A+GSI+Y+MI  R D+
Sbjct: 1104 LKTFNMLESKPALTPLGAHLKMKSATEEKLSTEEEYMNSVPYSSAVGSIMYAMIGTRPDL 1163

Query: 802  AYSITLLSRFMSNPSRDHWAALKLLLRYLDGTLNRGLHY 918
            AY + ++SRFMS P+++HW  +K +LRY+ GT++  L Y
Sbjct: 1164 AYPVGVVSRFMSQPAKEHWLGVKWVLRYIKGTVDTRLCY 1202



 Score = 43.5 bits (101), Expect(2) = 7e-40
 Identities = 23/37 (62%), Positives = 25/37 (67%)
 Frame = +2

Query: 980  DFRKSTTSYFFTLAINCISWKSQLQFVVALSTTEAEY 1090
            D R+S T   FTL  N ISWKS LQ VVA S+TE EY
Sbjct: 1223 DKRRSITGLVFTLGGNTISWKSGLQRVVAQSSTECEY 1259


>gb|AFB73912.1| polyprotein [Citrus sinensis]
          Length = 1309

 Score =  137 bits (346), Expect(2) = 2e-39
 Identities = 100/316 (31%), Positives = 158/316 (50%), Gaps = 10/316 (3%)
 Frame = +1

Query: 1    IFKIKESESVNETPCFKARLVAIGFSQVEGFDFNEIF---FKIQND*NHASCCCML*S*T 171
            ++KIK   + ++   ++ARLV  G++Q EG DFNEIF    ++       + C       
Sbjct: 841  VYKIKRDGN-DQVERYRARLVVKGYAQKEGIDFNEIFSPVVRLTTVRIVLAMCATFDLHL 899

Query: 172  *AVRCQNCFLAWHIRENHLHATTSQF*GKS*RKLGFSFEKSLYGLKQSP*QWYKRLNSFM 351
              +  +  FL   + E         F       L     KSLYGLKQ+P  WYKR +SF+
Sbjct: 900  EQLDVKTAFLHGELEEEIYMLQPEGFAETGKENLVCRLNKSLYGLKQAPRCWYKRFDSFI 959

Query: 352  IKSGFAKRNYDSCLYFCGDNIDNVVYLLHYVDDMIIGCKYKEKIVNLKYLIKSEFNTKDL 531
            +  G+ + + D C Y+     ++ + LL YVDDM++    K++I  LK  +  EF  KDL
Sbjct: 960  MSLGYNRLSSDHCAYYKRFEDNDFIILLLYVDDMLVAGPNKDRIQELKAQLAREFEMKDL 1019

Query: 532  VPLLESFA*TLIGIHM------IILCLYPINIS*RKLFPNF-LWTCVSPLVPLLLATFSF 690
             P     A  ++G+ +        + L   N   +K+   F +  C S   PL +     
Sbjct: 1020 GP-----ANKILGMQIHRDRNNRKIWLSQKNYL-KKILRRFNMQDCKSISTPLPVNFKLS 1073

Query: 691  LPKYPKIKNEKKIMANIRYRMAIGSIIYSMIFIRHDIAYSITLLSRFMSNPSRDHWAALK 870
                P  + E+K M+ + Y  A+GS++++MI  R DIA ++  +SR+M+NP  +HW A+K
Sbjct: 1074 SSMCPSNEAERKEMSRVPYASAVGSLMFAMICTRPDIAQAVGAVSRYMANPGGEHWIAVK 1133

Query: 871  LLLRYLDGTLNRGLHY 918
             +LRY+ GT N  L Y
Sbjct: 1134 RILRYIRGTSNVALCY 1149



 Score = 52.8 bits (125), Expect(2) = 2e-39
 Identities = 27/37 (72%), Positives = 29/37 (78%)
 Frame = +2

Query: 980  DFRKSTTSYFFTLAINCISWKSQLQFVVALSTTEAEY 1090
            D RKSTT Y FTLA   +SW S+LQ VVALSTTEAEY
Sbjct: 1169 DKRKSTTGYVFTLAGAAVSWVSKLQTVVALSTTEAEY 1205


>gb|AAV88069.1| hypothetical retrotransposon [Ipomoea batatas]
          Length = 1415

 Score =  146 bits (368), Expect(2) = 4e-39
 Identities = 102/308 (33%), Positives = 150/308 (48%), Gaps = 4/308 (1%)
 Frame = +1

Query: 1    IFKIKESESVNETPCFKARLVAIGFSQVEGFDFNEIF---FKIQND*NHASCCCML*S*T 171
            ++++K  E  +  P FKARLV  GFSQ +G DF+EIF    K  +          L    
Sbjct: 858  VYRVKHEEGTS-VPRFKARLVVKGFSQKKGIDFDEIFSPVVKFSSIRVVLGLAARLDIEI 916

Query: 172  *AVRCQNCFLAWHIRENHLHATTSQF*GKS*RKLGFSFEKSLYGLKQSP*QWYKRLNSFM 351
              +  +  FL   + E         F  K         +KSLYGLKQ+P QWYK+  S M
Sbjct: 917  EQMDVKTAFLHGDLDEEIYMEQPEGFKVKGKEDYVCRLKKSLYGLKQAPRQWYKKFTSVM 976

Query: 352  IKSGFAKRNYDSCLYFCGDNIDNVVYLLHYVDDMIIGCKYKEKIVNLKYLIKSEFNTKDL 531
             K G+ K + D C++    + D+ V LL YVDDM+I  +   +I  LK  +   F+ KD+
Sbjct: 977  SKHGYKKTSSDHCVFVNRYSDDDFVILLLYVDDMLIVGRNASRIQELKQELSKSFSMKDM 1036

Query: 532  VPLLESFA*TLIGIHMIILCLYPINIS*RKLFPNFLWTCVSPLVPLLLATFSFLPKY-PK 708
             P  +     +I                 K+   F      P+   L   F    K  P 
Sbjct: 1037 GPAKQILGMKIIRDRQNKKLWLSQEKYIEKVLERFHMNEAKPVSTPLDMHFKLCKKQCPS 1096

Query: 709  IKNEKKIMANIRYRMAIGSIIYSMIFIRHDIAYSITLLSRFMSNPSRDHWAALKLLLRYL 888
             + EK+ M  + Y  A+GS++Y+M+  R DIA+++ ++SRF+SNP R+HW A+K +LRYL
Sbjct: 1097 SEKEKEEMQRVPYSSAVGSLMYAMVCTRPDIAHAVGVVSRFLSNPGREHWDAVKWILRYL 1156

Query: 889  DGTLNRGL 912
             GT +  L
Sbjct: 1157 RGTSSLSL 1164



 Score = 43.5 bits (101), Expect(2) = 4e-39
 Identities = 21/37 (56%), Positives = 26/37 (70%)
 Frame = +2

Query: 980  DFRKSTTSYFFTLAINCISWKSQLQFVVALSTTEAEY 1090
            D RKST+ Y  T A   +SW+S+LQ  V LSTTEAE+
Sbjct: 1186 DTRKSTSGYLITYAGGAVSWQSRLQKCVDLSTTEAEF 1222