BLASTX nr result
ID: Catharanthus22_contig00026964
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Catharanthus22_contig00026964
(258 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis] 75 9e-12
gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|1337118... 69 5e-10
emb|CAN71688.1| hypothetical protein VITISV_015290 [Vitis vinifera] 66 4e-09
gb|AAD17414.1| copia-like retroelement pol polyprotein [Arabidop... 65 9e-09
emb|CAN81634.1| hypothetical protein VITISV_034565 [Vitis vinifera] 60 3e-07
emb|CAN61630.1| hypothetical protein VITISV_003191 [Vitis vinifera] 60 3e-07
emb|CAN66588.1| hypothetical protein VITISV_017097 [Vitis vinifera] 60 3e-07
dbj|BAB02145.1| copia-like retroelement pol polyprotein-like [Ar... 59 7e-07
emb|CAN80304.1| hypothetical protein VITISV_017821 [Vitis vinifera] 58 1e-06
emb|CAN69096.1| hypothetical protein VITISV_025437 [Vitis vinifera] 58 1e-06
gb|ABA91380.1| retrotransposon protein, putative, Ty1-copia subc... 57 2e-06
emb|CAN65222.1| hypothetical protein VITISV_038665 [Vitis vinifera] 57 2e-06
emb|CAN61272.1| hypothetical protein VITISV_039063 [Vitis vinifera] 57 2e-06
gb|AFB73911.1| polyprotein [Citrus sinensis] 56 6e-06
gb|AAF19226.1|AC007505_2 Highly similar to Ta1-3 polyprotein [Ar... 55 9e-06
emb|CAN60570.1| hypothetical protein VITISV_000227 [Vitis vinifera] 55 9e-06
>emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis]
Length = 1334
Score = 75.1 bits (183), Expect = 9e-12
Identities = 34/85 (40%), Positives = 53/85 (62%)
Frame = +3
Query: 3 LSRDRARRMSGEPIRYGYSYIVSYVFAVISYVEEKEPSCFSNVLKSPNRSLWFHAMDEEI 182
L+RDR RR P+RYGY+ +++Y V +EP+ FS ++S + W AM +E+
Sbjct: 778 LARDRVRREVRAPVRYGYADLIAYALLCADEVTIEEPANFSEAMESVHCDKWLEAMQDEM 837
Query: 183 CSLHKNKT*VLVPKPLKQKLIDCKW 257
SL +N+T L+P P ++LI+CKW
Sbjct: 838 ESLQRNQTWTLIPNPGNKRLINCKW 862
>gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|133711819|gb|ABO36636.1|
copia LTR rider [Solanum lycopersicum]
Length = 1307
Score = 69.3 bits (168), Expect = 5e-10
Identities = 35/86 (40%), Positives = 51/86 (59%), Gaps = 1/86 (1%)
Frame = +3
Query: 3 LSRDRARRMSGEP-IRYGYSYIVSYVFAVISYVEEKEPSCFSNVLKSPNRSLWFHAMDEE 179
+++DR RR+ P RYG+ +V Y V V+ EPS + + S + WF AM +E
Sbjct: 754 IAQDRPRRVGVRPPTRYGFEDMVGYALQVAEEVDTSEPSTYKEAILSSDSEKWFAAMGDE 813
Query: 180 ICSLHKNKT*VLVPKPLKQKLIDCKW 257
+ SLHKN+T LV +P +K+I CKW
Sbjct: 814 MESLHKNQTWDLVIQPSGRKIITCKW 839
>emb|CAN71688.1| hypothetical protein VITISV_015290 [Vitis vinifera]
Length = 259
Score = 66.2 bits (160), Expect = 4e-09
Identities = 34/85 (40%), Positives = 47/85 (55%)
Frame = +3
Query: 3 LSRDRARRMSGEPIRYGYSYIVSYVFAVISYVEEKEPSCFSNVLKSPNRSLWFHAMDEEI 182
L+RDR R P RY Y V+Y F+V +E++EP + + + + W M+EEI
Sbjct: 156 LARDRIMRQIKPPQRYSYVDSVAYAFSVAKNIEKEEPQTYHETITNRESTQWIITMNEEI 215
Query: 183 CSLHKNKT*VLVPKPLKQKLIDCKW 257
SL KN T LV KP QK++ KW
Sbjct: 216 ESLQKNLTWQLVEKPKNQKIVRYKW 240
>gb|AAD17414.1| copia-like retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1166
Score = 65.1 bits (157), Expect = 9e-09
Identities = 37/86 (43%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Frame = +3
Query: 3 LSRDRARRMS-GEPIRYGYSYIVSYVFAVISYVEEKEPSCFSNVLKSPNRSLWFHAMDEE 179
L+RD RR + P R+ V+Y A +EE+EP + LKS R W +AM EE
Sbjct: 696 LARDMKRRSNIRPPSRFEDEDFVAYALATAEDLEEEEPKSYEEALKSSKRKQWENAMKEE 755
Query: 180 ICSLHKNKT*VLVPKPLKQKLIDCKW 257
+ S K+ T L+ KP KQKLI CKW
Sbjct: 756 MDSHKKSHTWDLIEKPEKQKLIGCKW 781
>emb|CAN81634.1| hypothetical protein VITISV_034565 [Vitis vinifera]
Length = 595
Score = 60.1 bits (144), Expect = 3e-07
Identities = 33/82 (40%), Positives = 43/82 (52%)
Frame = +3
Query: 12 DRARRMSGEPIRYGYSYIVSYVFAVISYVEEKEPSCFSNVLKSPNRSLWFHAMDEEICSL 191
D+ RR P RYG+ +VSY S K+P F + + +S W AM EEI L
Sbjct: 132 DKPRRTIKPPTRYGFEDLVSYALITSS----KDPITFQEAIHNQEKSRWMGAMVEEIQFL 187
Query: 192 HKNKT*VLVPKPLKQKLIDCKW 257
HKN+T LV P ++ I CKW
Sbjct: 188 HKNQTWDLVEPPEGKRAIGCKW 209
>emb|CAN61630.1| hypothetical protein VITISV_003191 [Vitis vinifera]
Length = 1208
Score = 60.1 bits (144), Expect = 3e-07
Identities = 29/85 (34%), Positives = 45/85 (52%)
Frame = +3
Query: 3 LSRDRARRMSGEPIRYGYSYIVSYVFAVISYVEEKEPSCFSNVLKSPNRSLWFHAMDEEI 182
L RDR +R P RYG + + ++ +V + + EP + + S W A+ EE+
Sbjct: 735 LVRDRQKRQVKPPKRYGQAEMTAFALSVAEEIVDMEPKTYQEAINSNEADQWVKAIQEEM 794
Query: 183 CSLHKNKT*VLVPKPLKQKLIDCKW 257
SL KN+T LV KP +K++ KW
Sbjct: 795 DSLRKNETWELVTKPKDRKVVGSKW 819
>emb|CAN66588.1| hypothetical protein VITISV_017097 [Vitis vinifera]
Length = 815
Score = 60.1 bits (144), Expect = 3e-07
Identities = 33/85 (38%), Positives = 46/85 (54%)
Frame = +3
Query: 3 LSRDRARRMSGEPIRYGYSYIVSYVFAVISYVEEKEPSCFSNVLKSPNRSLWFHAMDEEI 182
++ DR RR+ PIRYG+ +VSY S ++ + F S +S W + EEI
Sbjct: 360 IAMDRPRRIIKPPIRYGFEDLVSYALITSS----RDSTTFQEAKHSQEKSRWVGVVVEEI 415
Query: 183 CSLHKNKT*VLVPKPLKQKLIDCKW 257
SLHKN+T LV P ++ I CKW
Sbjct: 416 QSLHKNQTWDLVELPKGKRAIGCKW 440
>dbj|BAB02145.1| copia-like retroelement pol polyprotein-like [Arabidopsis thaliana]
Length = 348
Score = 58.9 bits (141), Expect = 7e-07
Identities = 34/86 (39%), Positives = 46/86 (53%), Gaps = 1/86 (1%)
Frame = +3
Query: 3 LSRDRARRMS-GEPIRYGYSYIVSYVFAVISYVEEKEPSCFSNVLKSPNRSLWFHAMDEE 179
L+R+R RR + P R+ V+Y A +E +EP + +K R W AM EE
Sbjct: 168 LARERKRRSNIRPPSRFKDGDFVAYALATEEDLEIEEPKSYEEAMKRSKRKQWESAMKEE 227
Query: 180 ICSLHKNKT*VLVPKPLKQKLIDCKW 257
+ S K+ T L+ KP KQKLI CKW
Sbjct: 228 MDSHQKSHTWDLIEKPEKQKLIGCKW 253
>emb|CAN80304.1| hypothetical protein VITISV_017821 [Vitis vinifera]
Length = 939
Score = 58.2 bits (139), Expect = 1e-06
Identities = 32/85 (37%), Positives = 45/85 (52%)
Frame = +3
Query: 3 LSRDRARRMSGEPIRYGYSYIVSYVFAVISYVEEKEPSCFSNVLKSPNRSLWFHAMDEEI 182
L+RD ARR P R+GY+ +V+Y ++ + EP + + + W AM EE
Sbjct: 422 LTRDGARRSIRPPQRFGYNDMVAYSLSIGEELSCAEPKNYLEAISCKDSPKWMTAMQEEF 481
Query: 183 CSLHKNKT*VLVPKPLKQKLIDCKW 257
SL KN T LV KP K++ CKW
Sbjct: 482 ESLLKNGTWQLVDKPKGCKVVGCKW 506
>emb|CAN69096.1| hypothetical protein VITISV_025437 [Vitis vinifera]
Length = 992
Score = 57.8 bits (138), Expect = 1e-06
Identities = 28/85 (32%), Positives = 45/85 (52%)
Frame = +3
Query: 3 LSRDRARRMSGEPIRYGYSYIVSYVFAVISYVEEKEPSCFSNVLKSPNRSLWFHAMDEEI 182
L+RDR +R P RYG + + ++ +V + + EP + S + W + E++
Sbjct: 903 LARDRQKRQVKPPKRYGQAEMTTFALSVAEEIVDMEPKTNQEAINSDEANQWVKVIQEKM 962
Query: 183 CSLHKNKT*VLVPKPLKQKLIDCKW 257
SL KN+T LV KP +KL+ KW
Sbjct: 963 DSLRKNETWELVTKPKDRKLVGSKW 987
>gb|ABA91380.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1138
Score = 57.4 bits (137), Expect = 2e-06
Identities = 33/87 (37%), Positives = 51/87 (58%), Gaps = 2/87 (2%)
Frame = +3
Query: 3 LSRDRARRMSGEPIRY-GYSYIVSYVFAVISYVE-EKEPSCFSNVLKSPNRSLWFHAMDE 176
+++D+ +R + P RY + IV+Y +V +E EPS +S + S + + W AM +
Sbjct: 613 IAKDKPKRNTRPPQRYIEEANIVAYALSVAEEIEGNAEPSTYSEAIVSDDCNRWITAMHD 672
Query: 177 EICSLHKNKT*VLVPKPLKQKLIDCKW 257
E+ SL KN T LV P ++KLI CKW
Sbjct: 673 EMDSLEKNHTWKLVKLPKEKKLIHCKW 699
>emb|CAN65222.1| hypothetical protein VITISV_038665 [Vitis vinifera]
Length = 1562
Score = 57.4 bits (137), Expect = 2e-06
Identities = 30/91 (32%), Positives = 47/91 (51%), Gaps = 6/91 (6%)
Frame = +3
Query: 3 LSRDRARRMSGEPIRY------GYSYIVSYVFAVISYVEEKEPSCFSNVLKSPNRSLWFH 164
++ R RR P+RY + V++ AV + +EP + ++S + W
Sbjct: 872 IAAHRPRREIRRPMRYVDCVSANITNPVAFALAVAEEIGREEPRSYKEAMESKDSKKWLS 931
Query: 165 AMDEEICSLHKNKT*VLVPKPLKQKLIDCKW 257
+MD+E+ SL KN+T LVP P K +DCKW
Sbjct: 932 SMDDEMASLRKNQTWELVPLPEGVKPVDCKW 962
>emb|CAN61272.1| hypothetical protein VITISV_039063 [Vitis vinifera]
Length = 1643
Score = 57.4 bits (137), Expect = 2e-06
Identities = 30/91 (32%), Positives = 47/91 (51%), Gaps = 6/91 (6%)
Frame = +3
Query: 3 LSRDRARRMSGEPIRY------GYSYIVSYVFAVISYVEEKEPSCFSNVLKSPNRSLWFH 164
++ R RR P+RY + V++ AV + +EP + ++S + W
Sbjct: 1085 IAAXRPRREIRRPMRYVDCVSANITNPVAFALAVAEEIGREEPRSYKEAMESKDSKKWLS 1144
Query: 165 AMDEEICSLHKNKT*VLVPKPLKQKLIDCKW 257
+MD+E+ SL KN+T LVP P K +DCKW
Sbjct: 1145 SMDDEMASLRKNQTWELVPLPEGVKPVDCKW 1175
>gb|AFB73911.1| polyprotein [Citrus sinensis]
Length = 1309
Score = 55.8 bits (133), Expect = 6e-06
Identities = 31/73 (42%), Positives = 38/73 (52%)
Frame = +3
Query: 39 PIRYGYSYIVSYVFAVISYVEEKEPSCFSNVLKSPNRSLWFHAMDEEICSLHKNKT*VLV 218
P + Y+ A E+ EPS F L S + +LW AM EEI +LHKNKT LV
Sbjct: 768 PPTWHSEYVTEINVAYCLLTEDGEPSTFHEALNSSDVALWMTAMQEEIEALHKNKTWELV 827
Query: 219 PKPLKQKLIDCKW 257
P P +K I KW
Sbjct: 828 PLPRGRKAIGNKW 840
>gb|AAF19226.1|AC007505_2 Highly similar to Ta1-3 polyprotein [Arabidopsis thaliana]
Length = 1356
Score = 55.1 bits (131), Expect = 9e-06
Identities = 29/85 (34%), Positives = 44/85 (51%)
Frame = +3
Query: 3 LSRDRARRMSGEPIRYGYSYIVSYVFAVISYVEEKEPSCFSNVLKSPNRSLWFHAMDEEI 182
L+RDR RR P R+ V++ V+ +EP + ++S + W A +E+
Sbjct: 803 LARDRVRRNINPPTRFTEESSVTFALVVVENCIVQEPQSYQEAMESQDCEKWDMATHDEM 862
Query: 183 CSLHKNKT*VLVPKPLKQKLIDCKW 257
SL KN T LV KP +K+I C+W
Sbjct: 863 DSLMKNGTWDLVDKPKDRKIIGCRW 887
>emb|CAN60570.1| hypothetical protein VITISV_000227 [Vitis vinifera]
Length = 605
Score = 55.1 bits (131), Expect = 9e-06
Identities = 32/85 (37%), Positives = 43/85 (50%)
Frame = +3
Query: 3 LSRDRARRMSGEPIRYGYSYIVSYVFAVISYVEEKEPSCFSNVLKSPNRSLWFHAMDEEI 182
++ DR R I YG+ +VSY +P+ F + S +S W AM EEI
Sbjct: 233 ITMDRPRCTIKPSIMYGFEDLVSYALIT----SNGDPTTFQEAIHSQEKSRWMGAMVEEI 288
Query: 183 CSLHKNKT*VLVPKPLKQKLIDCKW 257
SLHKN+T LV P ++ I CKW
Sbjct: 289 QSLHKNQTWDLVKLPEGKREIRCKW 313