BLASTX nr result
ID: Catharanthus22_contig00026594
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Catharanthus22_contig00026594
(256 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAB87099.1| putative retroelement pol polyprotein [Arabidopsi... 68 7e-17
gb|AAM98191.1| unknown protein [Arabidopsis thaliana] gi|3860380... 68 8e-17
gb|AAG51258.1|AC025782_3 Ty1/copia-element polyprotein [Arabidop... 62 4e-15
gb|AAG09097.1|AC009323_8 Putative retroelement polyprotein [Arab... 62 8e-15
dbj|BAB10837.1| retroelement pol polyprotein-like [Arabidopsis t... 62 2e-14
dbj|BAA97287.1| retroelement pol polyprotein-like [Arabidopsis t... 60 5e-14
gb|AAC67205.1| putative retroelement pol polyprotein [Arabidopsi... 60 5e-14
gb|AEX61040.1| reverse transcriptase, partial [Chenopodium quinoa] 68 5e-12
emb|CAN60732.1| hypothetical protein VITISV_010209 [Vitis vinifera] 55 2e-11
emb|CAN60829.1| hypothetical protein VITISV_012059 [Vitis vinifera] 52 6e-11
emb|CAN65820.1| hypothetical protein VITISV_042324 [Vitis vinifera] 56 1e-10
gb|AFS30557.1| reverse transcriptase, partial [Petunia x hybrida] 65 1e-10
emb|CAN68148.1| hypothetical protein VITISV_035665 [Vitis vinifera] 47 1e-10
gb|AFS30555.1| reverse transcriptase, partial [Petunia x hybrida] 65 1e-10
emb|CAH56535.1| reverse transciptase [Brassica juncea] 70 3e-10
emb|CAN64502.1| hypothetical protein VITISV_020342 [Vitis vinifera] 52 3e-10
gb|AEX61043.1| reverse transcriptase, partial [Chenopodium quinoa] 69 5e-10
emb|CAN81001.1| hypothetical protein VITISV_006992 [Vitis vinifera] 49 5e-10
emb|CAN71595.1| hypothetical protein VITISV_010143 [Vitis vinifera] 53 6e-10
emb|CAN67992.1| hypothetical protein VITISV_015686 [Vitis vinifera] 49 8e-10
>gb|AAB87099.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1496
Score = 67.8 bits (164), Expect(2) = 7e-17
Identities = 33/54 (61%), Positives = 40/54 (74%)
Frame = -1
Query: 190 PPGFCSSSHGQVCLLKKSLYSLRQAPRC*FSKLTVALRRRGFSQSYTLFSLYIL 29
PPGF S +VC L+KSLY L+QAPRC FSKL+ ALR GF+QSY +SL+ L
Sbjct: 1114 PPGFKCSDPSKVCRLRKSLYGLKQAPRCWFSKLSTALRNIGFTQSYEDYSLFSL 1167
Score = 44.7 bits (104), Expect(2) = 7e-17
Identities = 18/20 (90%), Positives = 20/20 (100%)
Frame = -2
Query: 255 HQMDVHNAFLHGDLQKEVYM 196
HQMDVHNAFLHGDL++EVYM
Sbjct: 1092 HQMDVHNAFLHGDLEEEVYM 1111
>gb|AAM98191.1| unknown protein [Arabidopsis thaliana] gi|38603804|gb|AAR24647.1|
At2g23330 [Arabidopsis thaliana]
gi|110742535|dbj|BAE99183.1| putative retroelement pol
polyprotein [Arabidopsis thaliana]
Length = 776
Score = 67.8 bits (164), Expect(2) = 8e-17
Identities = 33/54 (61%), Positives = 40/54 (74%)
Frame = -1
Query: 190 PPGFCSSSHGQVCLLKKSLYSLRQAPRC*FSKLTVALRRRGFSQSYTLFSLYIL 29
PPGF S +VC L+KSLY L+QAPRC FSKL+ ALR GF+QSY +SL+ L
Sbjct: 394 PPGFKCSDPSKVCRLRKSLYGLKQAPRCWFSKLSTALRNIGFTQSYEDYSLFSL 447
Score = 44.7 bits (104), Expect(2) = 8e-17
Identities = 18/20 (90%), Positives = 20/20 (100%)
Frame = -2
Query: 255 HQMDVHNAFLHGDLQKEVYM 196
HQMDVHNAFLHGDL++EVYM
Sbjct: 372 HQMDVHNAFLHGDLEEEVYM 391
>gb|AAG51258.1|AC025782_3 Ty1/copia-element polyprotein [Arabidopsis thaliana]
Length = 1152
Score = 61.6 bits (148), Expect(2) = 4e-15
Identities = 31/60 (51%), Positives = 41/60 (68%), Gaps = 1/60 (1%)
Frame = -1
Query: 211 KRSIYA-PPPGFCSSSHGQVCLLKKSLYSLRQAPRC*FSKLTVALRRRGFSQSYTLFSLY 35
K IY PPPGF ++ VC LKKS+Y L+QAPRC F KL+ +L + GF+QS +SL+
Sbjct: 1054 KEDIYMKPPPGFKTTDPSLVCKLKKSIYGLKQAPRCWFEKLSTSLLKFGFTQSKKDYSLF 1113
Score = 45.1 bits (105), Expect(2) = 4e-15
Identities = 17/22 (77%), Positives = 21/22 (95%)
Frame = -2
Query: 255 HQMDVHNAFLHGDLQKEVYMHP 190
HQMDVHNAFLHGDL++++YM P
Sbjct: 1040 HQMDVHNAFLHGDLKEDIYMKP 1061
>gb|AAG09097.1|AC009323_8 Putative retroelement polyprotein [Arabidopsis thaliana]
Length = 1486
Score = 61.6 bits (148), Expect(2) = 8e-15
Identities = 29/56 (51%), Positives = 39/56 (69%)
Frame = -1
Query: 190 PPGFCSSSHGQVCLLKKSLYSLRQAPRC*FSKLTVALRRRGFSQSYTLFSLYILSR 23
PPGF + +VC L+KSLY L+QAPRC F+KLT AL+ GF Q + +SL+I +
Sbjct: 1104 PPGFRTGDKTKVCRLRKSLYGLKQAPRCWFAKLTSALKNYGFIQDISDYSLFIFHK 1159
Score = 43.9 bits (102), Expect(2) = 8e-15
Identities = 18/20 (90%), Positives = 19/20 (95%)
Frame = -2
Query: 255 HQMDVHNAFLHGDLQKEVYM 196
HQMDVHNAFLHGDL +EVYM
Sbjct: 1082 HQMDVHNAFLHGDLDEEVYM 1101
>dbj|BAB10837.1| retroelement pol polyprotein-like [Arabidopsis thaliana]
Length = 1462
Score = 62.0 bits (149), Expect(2) = 2e-14
Identities = 29/56 (51%), Positives = 39/56 (69%)
Frame = -1
Query: 190 PPGFCSSSHGQVCLLKKSLYSLRQAPRC*FSKLTVALRRRGFSQSYTLFSLYILSR 23
PPGF S + +VC L+K+LY L+QAPRC F+KLT AL GF Q + +SL+ + R
Sbjct: 1066 PPGFGSDDNRKVCRLRKALYGLKQAPRCWFAKLTTALNDYGFIQDISDYSLFTMER 1121
Score = 42.4 bits (98), Expect(2) = 2e-14
Identities = 17/20 (85%), Positives = 19/20 (95%)
Frame = -2
Query: 255 HQMDVHNAFLHGDLQKEVYM 196
HQMDVHNAFLHGDL +EVY+
Sbjct: 1044 HQMDVHNAFLHGDLDEEVYI 1063
>dbj|BAA97287.1| retroelement pol polyprotein-like [Arabidopsis thaliana]
Length = 1491
Score = 60.5 bits (145), Expect(2) = 5e-14
Identities = 30/55 (54%), Positives = 37/55 (67%)
Frame = -1
Query: 190 PPGFCSSSHGQVCLLKKSLYSLRQAPRC*FSKLTVALRRRGFSQSYTLFSLYILS 26
PPGF S +VC L+KSLY L+QAPRC F KL+ AL+R GF Q Y +S + S
Sbjct: 1109 PPGFRHSHPDKVCRLRKSLYGLKQAPRCWFKKLSDALKRFGFIQGYEDYSFFSYS 1163
Score = 42.4 bits (98), Expect(2) = 5e-14
Identities = 17/20 (85%), Positives = 20/20 (100%)
Frame = -2
Query: 255 HQMDVHNAFLHGDLQKEVYM 196
+QMDVHNAFLHGDL++EVYM
Sbjct: 1087 YQMDVHNAFLHGDLEEEVYM 1106
>gb|AAC67205.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1413
Score = 60.5 bits (145), Expect(2) = 5e-14
Identities = 30/55 (54%), Positives = 37/55 (67%)
Frame = -1
Query: 190 PPGFCSSSHGQVCLLKKSLYSLRQAPRC*FSKLTVALRRRGFSQSYTLFSLYILS 26
PPGF S +VC L+KSLY L+QAPRC F KL+ AL+R GF Q Y +S + S
Sbjct: 1109 PPGFRHSHPDKVCRLRKSLYGLKQAPRCWFKKLSDALKRFGFIQGYEDYSFFSYS 1163
Score = 42.4 bits (98), Expect(2) = 5e-14
Identities = 17/20 (85%), Positives = 20/20 (100%)
Frame = -2
Query: 255 HQMDVHNAFLHGDLQKEVYM 196
+QMDVHNAFLHGDL++EVYM
Sbjct: 1087 YQMDVHNAFLHGDLEEEVYM 1106
>gb|AEX61040.1| reverse transcriptase, partial [Chenopodium quinoa]
Length = 87
Score = 68.2 bits (165), Expect(2) = 5e-12
Identities = 33/54 (61%), Positives = 39/54 (72%)
Frame = -1
Query: 190 PPGFCSSSHGQVCLLKKSLYSLRQAPRC*FSKLTVALRRRGFSQSYTLFSLYIL 29
PPGF S G VC L KSLY LRQAPRC +SKL +L+R GF QSY+ +SL+ L
Sbjct: 17 PPGFHGSQPGMVCRLLKSLYGLRQAPRCWYSKLVASLKRYGFVQSYSDYSLFTL 70
Score = 28.1 bits (61), Expect(2) = 5e-12
Identities = 11/14 (78%), Positives = 13/14 (92%)
Frame = -2
Query: 237 NAFLHGDLQKEVYM 196
+AFLHGDL +EVYM
Sbjct: 1 SAFLHGDLDEEVYM 14
>emb|CAN60732.1| hypothetical protein VITISV_010209 [Vitis vinifera]
Length = 1409
Score = 54.7 bits (130), Expect(2) = 2e-11
Identities = 27/53 (50%), Positives = 39/53 (73%), Gaps = 4/53 (7%)
Frame = -1
Query: 190 PPGFCSSSHG-QVCLLKKSLYSLRQAPRC*FSKLTVALRRRGFSQS---YTLF 44
PPGF SS+ G +VC L+K+LY L+Q+PR F + ++A+R+ GF QS +TLF
Sbjct: 1026 PPGFVSSTQGKEVCKLQKALYGLKQSPRAWFGRFSLAMRKHGFKQSNXDHTLF 1078
Score = 39.3 bits (90), Expect(2) = 2e-11
Identities = 16/20 (80%), Positives = 18/20 (90%)
Frame = -2
Query: 255 HQMDVHNAFLHGDLQKEVYM 196
HQ DV NAFLHGDL++EVYM
Sbjct: 1004 HQFDVKNAFLHGDLEEEVYM 1023
>emb|CAN60829.1| hypothetical protein VITISV_012059 [Vitis vinifera]
Length = 1128
Score = 51.6 bits (122), Expect(2) = 6e-11
Identities = 30/63 (47%), Positives = 39/63 (61%)
Frame = -1
Query: 190 PPGFCSSSHGQVCLLKKSLYSLRQAPRC*FSKLTVALRRRGFSQSYTLFSLYILSRQYFF 11
P GF + + +VC LKKSLY LRQA R +SKL+ +L + GFSQ+ T SL+I F
Sbjct: 743 PLGFSTPNDPRVCKLKKSLYGLRQASRQWYSKLSSSLLKFGFSQAKTDSSLFIKQTSTSF 802
Query: 10 CVL 2
L
Sbjct: 803 IAL 805
Score = 40.8 bits (94), Expect(2) = 6e-11
Identities = 18/26 (69%), Positives = 21/26 (80%)
Frame = -2
Query: 255 HQMDVHNAFLHGDLQKEVYMHPHLVF 178
HQ+DV+NAFLHGDL +EVYM L F
Sbjct: 721 HQLDVNNAFLHGDLNEEVYMQLPLGF 746
>emb|CAN65820.1| hypothetical protein VITISV_042324 [Vitis vinifera]
Length = 1262
Score = 55.8 bits (133), Expect(2) = 1e-10
Identities = 31/63 (49%), Positives = 40/63 (63%)
Frame = -1
Query: 190 PPGFCSSSHGQVCLLKKSLYSLRQAPRC*FSKLTVALRRRGFSQSYTLFSLYILSRQYFF 11
PPGF + + +VC LKKSLY LRQA R +SKL+ +L + GFSQ+ T SL+I F
Sbjct: 1049 PPGFSTPNDPRVCKLKKSLYGLRQASRQWYSKLSSSLLKFGFSQAKTDSSLFIXQTSTSF 1108
Query: 10 CVL 2
L
Sbjct: 1109 IAL 1111
Score = 35.8 bits (81), Expect(2) = 1e-10
Identities = 14/20 (70%), Positives = 18/20 (90%)
Frame = -2
Query: 255 HQMDVHNAFLHGDLQKEVYM 196
HQ+DV+NAFLH DL ++VYM
Sbjct: 1027 HQLDVNNAFLHEDLNEDVYM 1046
>gb|AFS30557.1| reverse transcriptase, partial [Petunia x hybrida]
Length = 87
Score = 65.5 bits (158), Expect(2) = 1e-10
Identities = 29/56 (51%), Positives = 41/56 (73%)
Frame = -1
Query: 190 PPGFCSSSHGQVCLLKKSLYSLRQAPRC*FSKLTVALRRRGFSQSYTLFSLYILSR 23
PPG + G +C L+KSLY L+QAPRC F+KL+ AL+R GF QSY+ +SL+ + +
Sbjct: 17 PPGHRMTGRGAMCRLRKSLYGLKQAPRCWFAKLSAALKRYGFRQSYSDYSLFTMKK 72
Score = 26.2 bits (56), Expect(2) = 1e-10
Identities = 10/13 (76%), Positives = 11/13 (84%)
Frame = -2
Query: 234 AFLHGDLQKEVYM 196
AF HGDL +EVYM
Sbjct: 2 AFFHGDLHEEVYM 14
>emb|CAN68148.1| hypothetical protein VITISV_035665 [Vitis vinifera]
Length = 1813
Score = 46.6 bits (109), Expect(2) = 1e-10
Identities = 23/57 (40%), Positives = 32/57 (56%)
Frame = -1
Query: 193 PPPGFCSSSHGQVCLLKKSLYSLRQAPRC*FSKLTVALRRRGFSQSYTLFSLYILSR 23
PPPG VC L+KS+Y L+QA R FS T ++ G+ QS +SL+ S+
Sbjct: 1346 PPPGLRRQGENLVCRLRKSIYGLKQASRNWFSTFTATVKSAGYIQSKADYSLFTKSQ 1402
Score = 44.7 bits (104), Expect(2) = 1e-10
Identities = 18/22 (81%), Positives = 21/22 (95%)
Frame = -2
Query: 255 HQMDVHNAFLHGDLQKEVYMHP 190
HQ+DVHNAFLHG+LQ+EVYM P
Sbjct: 1325 HQLDVHNAFLHGNLQEEVYMTP 1346
>gb|AFS30555.1| reverse transcriptase, partial [Petunia x hybrida]
Length = 86
Score = 65.1 bits (157), Expect(2) = 1e-10
Identities = 29/56 (51%), Positives = 41/56 (73%)
Frame = -1
Query: 190 PPGFCSSSHGQVCLLKKSLYSLRQAPRC*FSKLTVALRRRGFSQSYTLFSLYILSR 23
PPG + G VC L+KSLY L+QAPRC F+KL+ AL++ GF QSY+ +SL+ + +
Sbjct: 17 PPGHRMTGRGAVCRLRKSLYGLKQAPRCWFAKLSAALKQYGFRQSYSDYSLFTMKK 72
Score = 26.2 bits (56), Expect(2) = 1e-10
Identities = 10/13 (76%), Positives = 11/13 (84%)
Frame = -2
Query: 234 AFLHGDLQKEVYM 196
AF HGDL +EVYM
Sbjct: 2 AFFHGDLHEEVYM 14
>emb|CAH56535.1| reverse transciptase [Brassica juncea]
Length = 86
Score = 70.1 bits (170), Expect = 3e-10
Identities = 35/64 (54%), Positives = 45/64 (70%), Gaps = 1/64 (1%)
Frame = -1
Query: 211 KRSIYA-PPPGFCSSSHGQVCLLKKSLYSLRQAPRC*FSKLTVALRRRGFSQSYTLFSLY 35
K +Y PPPGF S +VCLLKKSLY L+QAPRC F KL+ +L GF+QS + +SL+
Sbjct: 9 KEEVYMRPPPGFKGSDKNKVCLLKKSLYGLKQAPRCWFEKLSSSLVSYGFTQSLSDYSLF 68
Query: 34 ILSR 23
I+ R
Sbjct: 69 IMER 72
>emb|CAN64502.1| hypothetical protein VITISV_020342 [Vitis vinifera]
Length = 660
Score = 52.0 bits (123), Expect(2) = 3e-10
Identities = 30/63 (47%), Positives = 39/63 (61%)
Frame = -1
Query: 190 PPGFCSSSHGQVCLLKKSLYSLRQAPRC*FSKLTVALRRRGFSQSYTLFSLYILSRQYFF 11
PPGF + + QVC LKKSLY LRQA R SKL+ +L + GF+Q+ + SL+I F
Sbjct: 425 PPGFSTPNDPQVCKLKKSLYGLRQASRQWNSKLSSSLLKFGFNQAKSDSSLFIRQTSTSF 484
Query: 10 CVL 2
L
Sbjct: 485 IAL 487
Score = 38.1 bits (87), Expect(2) = 3e-10
Identities = 15/20 (75%), Positives = 19/20 (95%)
Frame = -2
Query: 255 HQMDVHNAFLHGDLQKEVYM 196
HQ++V+NAFLHGDL +EVYM
Sbjct: 403 HQLNVNNAFLHGDLNEEVYM 422
>gb|AEX61043.1| reverse transcriptase, partial [Chenopodium quinoa]
Length = 87
Score = 69.3 bits (168), Expect = 5e-10
Identities = 31/56 (55%), Positives = 43/56 (76%)
Frame = -1
Query: 190 PPGFCSSSHGQVCLLKKSLYSLRQAPRC*FSKLTVALRRRGFSQSYTLFSLYILSR 23
PPGF ++ +VC +KKSLY L+QAPRC F KL++AL++ GF QSY +SL+ LS+
Sbjct: 17 PPGFQKNNSDKVCKMKKSLYGLKQAPRCWFKKLSMALKKYGFKQSYNDYSLFTLSK 72
>emb|CAN81001.1| hypothetical protein VITISV_006992 [Vitis vinifera]
Length = 1131
Score = 49.3 bits (116), Expect(2) = 5e-10
Identities = 28/65 (43%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
Frame = -1
Query: 190 PPGFCSSSHG-QVCLLKKSLYSLRQAPRC*FSKLTVALRRRGFSQSYTLFSLYI-LSRQY 17
PPGFC VC L KSLY L+QA R F K + +++ GF QS +SL+ +S
Sbjct: 748 PPGFCRQGETLMVCRLNKSLYGLKQASRSWFQKFSATIQQNGFHQSMADYSLFTKISGNS 807
Query: 16 FFCVL 2
F VL
Sbjct: 808 FIVVL 812
Score = 40.0 bits (92), Expect(2) = 5e-10
Identities = 17/20 (85%), Positives = 18/20 (90%)
Frame = -2
Query: 255 HQMDVHNAFLHGDLQKEVYM 196
HQMDV NAFLHGDL +EVYM
Sbjct: 726 HQMDVQNAFLHGDLLEEVYM 745
>emb|CAN71595.1| hypothetical protein VITISV_010143 [Vitis vinifera]
Length = 1523
Score = 53.1 bits (126), Expect(2) = 6e-10
Identities = 29/63 (46%), Positives = 38/63 (60%)
Frame = -1
Query: 190 PPGFCSSSHGQVCLLKKSLYSLRQAPRC*FSKLTVALRRRGFSQSYTLFSLYILSRQYFF 11
PPGF +VC L KSLY L+QA R F KL+ AL+ GF QS++ +SL+ + Q F
Sbjct: 1096 PPGFGRKGEHRVCKLHKSLYGLKQASRQWFLKLSSALKAAGFKQSWSDYSLFXRNTQGRF 1155
Query: 10 CVL 2
L
Sbjct: 1156 TTL 1158
Score = 35.8 bits (81), Expect(2) = 6e-10
Identities = 14/20 (70%), Positives = 19/20 (95%)
Frame = -2
Query: 255 HQMDVHNAFLHGDLQKEVYM 196
HQ+DV+NAFL+GDL ++VYM
Sbjct: 1074 HQLDVNNAFLNGDLYEDVYM 1093
>emb|CAN67992.1| hypothetical protein VITISV_015686 [Vitis vinifera]
Length = 1308
Score = 49.3 bits (116), Expect(2) = 8e-10
Identities = 28/61 (45%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Frame = -1
Query: 211 KRSIYA-PPPGFCSSSHGQVCLLKKSLYSLRQAPRC*FSKLTVALRRRGFSQSYTLFSLY 35
K IY PPPG SS VC L++SLY L+QAPR F K L + F QS SL+
Sbjct: 892 KECIYMKPPPGLFPSSTSHVCKLRRSLYGLKQAPRAWFEKFRTTLLQFSFRQSKYDTSLF 951
Query: 34 I 32
+
Sbjct: 952 L 952
Score = 39.3 bits (90), Expect(2) = 8e-10
Identities = 16/22 (72%), Positives = 19/22 (86%)
Frame = -2
Query: 255 HQMDVHNAFLHGDLQKEVYMHP 190
HQMDV NAFLHGDL++ +YM P
Sbjct: 878 HQMDVKNAFLHGDLKECIYMKP 899