BLASTX nr result
ID: Catharanthus22_contig00026377
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Catharanthus22_contig00026377
(278 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAN64827.1| hypothetical protein VITISV_030308 [Vitis vinifera] 52 2e-06
gb|ABI34342.1| Polyprotein, putative [Solanum demissum] 52 2e-06
emb|CAN63843.1| hypothetical protein VITISV_036670 [Vitis vinifera] 51 3e-06
gb|AFN88207.1| integrase core domain containing protein [Phaseol... 52 3e-06
emb|CAN62614.1| hypothetical protein VITISV_028123 [Vitis vinifera] 49 4e-06
emb|CAN79281.1| hypothetical protein VITISV_034553 [Vitis vinifera] 48 5e-06
emb|CAN70277.1| hypothetical protein VITISV_022230 [Vitis vinifera] 51 6e-06
gb|ABI34329.1| Integrase core domain containing protein [Solanum... 50 1e-05
>emb|CAN64827.1| hypothetical protein VITISV_030308 [Vitis vinifera]
Length = 1096
Score = 51.6 bits (122), Expect(2) = 2e-06
Identities = 24/40 (60%), Positives = 31/40 (77%), Gaps = 1/40 (2%)
Frame = -1
Query: 119 FNTVICQYGMVHSKADHSVFH*HKD-NLCIYLVFYVDDIV 3
F++V+ ++GM+HS ADHSVF+ H CIYLV YVDDIV
Sbjct: 888 FSSVVQEFGMLHSTADHSVFYHHNSLGQCIYLVVYVDDIV 927
Score = 25.4 bits (54), Expect(2) = 2e-06
Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = -3
Query: 276 QLDIKNAFAQGHIKKKSKWSN-Y*FLAQEESGKV 178
QLDIKNAF G + ++ F+AQ ESG V
Sbjct: 834 QLDIKNAFLHGDLAEEVYMEQPPGFVAQGESGLV 867
>gb|ABI34342.1| Polyprotein, putative [Solanum demissum]
Length = 1054
Score = 52.0 bits (123), Expect(2) = 2e-06
Identities = 26/40 (65%), Positives = 31/40 (77%), Gaps = 1/40 (2%)
Frame = -1
Query: 119 FNTVICQYGMVHSKADHSVFH*HK-DNLCIYLVFYVDDIV 3
F+TVI ++GM S ADHSVF+ H +LCIYLV YVDDIV
Sbjct: 796 FSTVIQEFGMTRSGADHSVFYRHSAPSLCIYLVVYVDDIV 835
Score = 25.0 bits (53), Expect(2) = 2e-06
Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = -3
Query: 276 QLDIKNAFAQGHIKKKSKWSN-Y*FLAQEESGKVV 175
QLDIKNAF G ++++ F+AQ ES +V
Sbjct: 741 QLDIKNAFLHGDLEEEVYMEQPPGFVAQGESSSLV 775
>emb|CAN63843.1| hypothetical protein VITISV_036670 [Vitis vinifera]
Length = 753
Score = 51.2 bits (121), Expect(2) = 3e-06
Identities = 24/40 (60%), Positives = 32/40 (80%), Gaps = 1/40 (2%)
Frame = -1
Query: 119 FNTVICQYGMVHSKADHSVFH*HK-DNLCIYLVFYVDDIV 3
F++V+ ++GM+ SKADHSVF+ H + CIYLV YVDDIV
Sbjct: 502 FSSVVQEFGMLQSKADHSVFYHHNFSSQCIYLVVYVDDIV 541
Score = 25.4 bits (54), Expect(2) = 3e-06
Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = -3
Query: 276 QLDIKNAFAQGHIKKKSKWSN-Y*FLAQEESGKV 178
QLDIKNAF G + ++ F+AQ ESG V
Sbjct: 448 QLDIKNAFLHGELLEEVYMEQPPSFVAQGESGLV 481
>gb|AFN88207.1| integrase core domain containing protein [Phaseolus vulgaris]
Length = 1387
Score = 52.4 bits (124), Expect(2) = 3e-06
Identities = 24/39 (61%), Positives = 29/39 (74%)
Frame = -1
Query: 119 FNTVICQYGMVHSKADHSVFH*HKDNLCIYLVFYVDDIV 3
F+ V+ Q+GM S+ADHSVF+ H CIYLV YVDDIV
Sbjct: 1037 FSNVVQQFGMTRSEADHSVFYRHSSVGCIYLVVYVDDIV 1075
Score = 23.9 bits (50), Expect(2) = 3e-06
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = -3
Query: 276 QLDIKNAFAQGHIKKKSKWSN-Y*FLAQEESGKVV 175
QLD+KNAF G ++++ F+AQ ES +V
Sbjct: 982 QLDVKNAFLNGDLQEEIYMEQPPGFVAQGESSGLV 1016
>emb|CAN62614.1| hypothetical protein VITISV_028123 [Vitis vinifera]
Length = 1102
Score = 48.5 bits (114), Expect(3) = 4e-06
Identities = 23/40 (57%), Positives = 30/40 (75%), Gaps = 1/40 (2%)
Frame = -1
Query: 119 FNTVICQYGMVHSKADHSVFH*HKD-NLCIYLVFYVDDIV 3
F++V+ ++GM+ S ADHSVF+ H CIYLV YVDDIV
Sbjct: 751 FSSVVQEFGMLRSTADHSVFYHHNSLGQCIYLVVYVDDIV 790
Score = 23.9 bits (50), Expect(3) = 4e-06
Identities = 20/50 (40%), Positives = 23/50 (46%)
Frame = -2
Query: 256 FCSGTHKEEV*MEQLLISCSRGVW*SCRL*CSLYRLTQSLSA*FSSLTQL 107
F G EEV MEQ + CRL SLY L QS A FS + +
Sbjct: 714 FLHGDLAEEVYMEQPPV---------CRLRRSLYGLKQSPRAWFSRFSSV 754
Score = 22.7 bits (47), Expect(3) = 4e-06
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = -3
Query: 276 QLDIKNAFAQGHIKKK 229
QLDIKNAF G + ++
Sbjct: 707 QLDIKNAFLHGDLAEE 722
>emb|CAN79281.1| hypothetical protein VITISV_034553 [Vitis vinifera]
Length = 713
Score = 48.1 bits (113), Expect(2) = 5e-06
Identities = 22/40 (55%), Positives = 30/40 (75%), Gaps = 1/40 (2%)
Frame = -1
Query: 119 FNTVICQYGMVHSKADHSVFH*HKD-NLCIYLVFYVDDIV 3
F++++ ++GM+ S ADHSVF+ H CIYLV YVDDIV
Sbjct: 508 FSSIVQEFGMLRSTADHSVFYHHNSLGQCIYLVVYVDDIV 547
Score = 27.7 bits (60), Expect(2) = 5e-06
Identities = 17/34 (50%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = -3
Query: 276 QLDIKNAFAQGHIKKKSKWSN-Y*FLAQEESGKV 178
QLDIKNAF G + ++ F+AQ ESGKV
Sbjct: 454 QLDIKNAFLHGDLVEEVYMEQPPSFVAQGESGKV 487
>emb|CAN70277.1| hypothetical protein VITISV_022230 [Vitis vinifera]
Length = 1166
Score = 50.8 bits (120), Expect(2) = 6e-06
Identities = 32/67 (47%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Frame = -1
Query: 200 LKRSLVKLSTLMFSLSSHAVFECLIF*FNTVICQYGMVHSKADHSVFH*H-KDNLCIYLV 24
L+RSL L S A F C F+ V+ ++GM+ S+ADHSVF+ H + CIYLV
Sbjct: 897 LRRSLYGLKQ-----SHRAWFGC----FSLVVQEFGMLRSEADHSVFYHHNSSSQCIYLV 947
Query: 23 FYVDDIV 3
YVDDIV
Sbjct: 948 VYVDDIV 954
Score = 24.6 bits (52), Expect(2) = 6e-06
Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = -3
Query: 276 QLDIKNAFAQGHIKKKSKWSN-Y*FLAQEESGKV 178
QLDIKN F G + ++ F+AQ ESG V
Sbjct: 861 QLDIKNVFLHGELLEEMCMEQPLGFVAQGESGLV 894
>gb|ABI34329.1| Integrase core domain containing protein [Solanum demissum]
Length = 1775
Score = 49.7 bits (117), Expect(2) = 1e-05
Identities = 25/40 (62%), Positives = 30/40 (75%), Gaps = 1/40 (2%)
Frame = -1
Query: 119 FNTVICQYGMVHSKADHSVFH*HK-DNLCIYLVFYVDDIV 3
F+TVI ++GM S ADHSVF+ H + CIYLV YVDDIV
Sbjct: 1035 FSTVIQEFGMTRSGADHSVFYRHSAPSRCIYLVVYVDDIV 1074
Score = 25.0 bits (53), Expect(2) = 1e-05
Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = -3
Query: 276 QLDIKNAFAQGHIKKKSKWSN-Y*FLAQEESGKVV 175
QLDIKNAF G ++++ F+AQ ES +V
Sbjct: 980 QLDIKNAFLHGDLEEEVYMEQPPGFVAQGESSSLV 1014