BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Catharanthus22_contig00025950
         (348 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002265876.1| PREDICTED: pentatricopeptide repeat-containi...    72   6e-11
ref|XP_006360648.1| PREDICTED: pentatricopeptide repeat-containi...    71   1e-10
ref|XP_006372218.1| hypothetical protein POPTR_0018s14360g [Popu...    63   3e-08
ref|XP_002331436.1| predicted protein [Populus trichocarpa] gi|5...    63   3e-08
ref|XP_006360650.1| PREDICTED: pentatricopeptide repeat-containi...    61   2e-07
ref|XP_002511816.1| pentatricopeptide repeat-containing protein,...    60   3e-07
ref|XP_004240282.1| PREDICTED: pentatricopeptide repeat-containi...    59   5e-07

>ref|XP_002265876.1| PREDICTED: pentatricopeptide repeat-containing protein At3g42630
           [Vitis vinifera] gi|297736023|emb|CBI24061.3| unnamed
           protein product [Vitis vinifera]
          Length = 423

 Score = 72.4 bits (176), Expect = 6e-11
 Identities = 43/106 (40%), Positives = 64/106 (60%)
 Frame = -1

Query: 318 PLCMKIPVSTFEATRFQLSCKRNGYDNRSFSPMRVWQAKQDGNGSSLGDNCMDCGWIAPG 139
           PLC+   + + +  RF++S  +N   NR+ +    W  KQ+ +     DN +D   +   
Sbjct: 9   PLCL---IGSHKTQRFRVSLHQNYSPNRALARKLFWHWKQERSVDGK-DNYVDYTPLIQA 64

Query: 138 LSRKCLPHEAEEFLLKIRSEGFGCDMSTLSALMLCYANSRLLSEAQ 1
           LSRK LPH A+E L +++SEGF  + STLSALMLCYA++ L  +AQ
Sbjct: 65  LSRKRLPHVAQELLFEMKSEGFLPNNSTLSALMLCYADNGLFPKAQ 110


>ref|XP_006360648.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g42630-like isoform X1 [Solanum tuberosum]
           gi|565389826|ref|XP_006360649.1| PREDICTED:
           pentatricopeptide repeat-containing protein
           At3g42630-like isoform X2 [Solanum tuberosum]
          Length = 416

 Score = 71.2 bits (173), Expect = 1e-10
 Identities = 40/81 (49%), Positives = 52/81 (64%)
 Frame = -1

Query: 246 YDNRSFSPMRVWQAKQDGNGSSLGDNCMDCGWIAPGLSRKCLPHEAEEFLLKIRSEGFGC 67
           + N+S +  R W+ KQ GN    G N  DC  +  GLSRK LP  AE  +L+++SEGF  
Sbjct: 23  HQNQSSAQKRRWRMKQGGNIDPRG-NYADCASLIQGLSRKKLPVAAERLVLEMKSEGFVP 81

Query: 66  DMSTLSALMLCYANSRLLSEA 4
           D STLSALMLCYA++ L  +A
Sbjct: 82  DSSTLSALMLCYASNGLFYKA 102


>ref|XP_006372218.1| hypothetical protein POPTR_0018s14360g [Populus trichocarpa]
           gi|550318749|gb|ERP50015.1| hypothetical protein
           POPTR_0018s14360g [Populus trichocarpa]
          Length = 392

 Score = 63.2 bits (152), Expect = 3e-08
 Identities = 37/104 (35%), Positives = 56/104 (53%)
 Frame = -1

Query: 312 CMKIPVSTFEATRFQLSCKRNGYDNRSFSPMRVWQAKQDGNGSSLGDNCMDCGWIAPGLS 133
           C    + +++  RF +   +     R+ +   + Q K+D  G    + C DC  +   L 
Sbjct: 12  CYANVIGSYKPKRFAIFSIKRDPKKRALAQKMIRQWKRD-QGVFGKETCADCASLIQTLC 70

Query: 132 RKCLPHEAEEFLLKIRSEGFGCDMSTLSALMLCYANSRLLSEAQ 1
           +   PH AEE LL+++ EGF  D  TLSA+MLCYA+S LL +AQ
Sbjct: 71  KHRRPHLAEELLLELKCEGFLPDNRTLSAMMLCYADSGLLPQAQ 114


>ref|XP_002331436.1| predicted protein [Populus trichocarpa]
           gi|566215849|ref|XP_006372219.1| pentatricopeptide
           repeat-containing family protein [Populus trichocarpa]
           gi|550318750|gb|ERP50016.1| pentatricopeptide
           repeat-containing family protein [Populus trichocarpa]
          Length = 428

 Score = 63.2 bits (152), Expect = 3e-08
 Identities = 37/104 (35%), Positives = 56/104 (53%)
 Frame = -1

Query: 312 CMKIPVSTFEATRFQLSCKRNGYDNRSFSPMRVWQAKQDGNGSSLGDNCMDCGWIAPGLS 133
           C    + +++  RF +   +     R+ +   + Q K+D  G    + C DC  +   L 
Sbjct: 12  CYANVIGSYKPKRFAIFSIKRDPKKRALAQKMIRQWKRD-QGVFGKETCADCASLIQTLC 70

Query: 132 RKCLPHEAEEFLLKIRSEGFGCDMSTLSALMLCYANSRLLSEAQ 1
           +   PH AEE LL+++ EGF  D  TLSA+MLCYA+S LL +AQ
Sbjct: 71  KHRRPHLAEELLLELKCEGFLPDNRTLSAMMLCYADSGLLPQAQ 114


>ref|XP_006360650.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g42630-like isoform X3 [Solanum tuberosum]
          Length = 409

 Score = 60.8 bits (146), Expect = 2e-07
 Identities = 35/68 (51%), Positives = 45/68 (66%)
 Frame = -1

Query: 207 AKQDGNGSSLGDNCMDCGWIAPGLSRKCLPHEAEEFLLKIRSEGFGCDMSTLSALMLCYA 28
           A++ GN    G N  DC  +  GLSRK LP  AE  +L+++SEGF  D STLSALMLCYA
Sbjct: 29  AQKGGNIDPRG-NYADCASLIQGLSRKKLPVAAERLVLEMKSEGFVPDSSTLSALMLCYA 87

Query: 27  NSRLLSEA 4
           ++ L  +A
Sbjct: 88  SNGLFYKA 95


>ref|XP_002511816.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223548996|gb|EEF50485.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 427

 Score = 60.1 bits (144), Expect = 3e-07
 Identities = 34/92 (36%), Positives = 53/92 (57%)
 Frame = -1

Query: 276 RFQLSCKRNGYDNRSFSPMRVWQAKQDGNGSSLGDNCMDCGWIAPGLSRKCLPHEAEEFL 97
           RF+L   +    NR  +   ++Q KQD    S     +DC  +   L  K  PH A+E L
Sbjct: 26  RFRLFSSQRDPTNRPLARKIIYQWKQD---QSFSCKEVDCASLVQNLHSKRTPHLAQEIL 82

Query: 96  LKIRSEGFGCDMSTLSALMLCYANSRLLSEAQ 1
           L+++S+G+  +  TLSA++LCYA++ LL +AQ
Sbjct: 83  LEMKSQGYVLNNPTLSAILLCYADNGLLPQAQ 114


>ref|XP_004240282.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g42630-like [Solanum lycopersicum]
          Length = 381

 Score = 59.3 bits (142), Expect = 5e-07
 Identities = 31/56 (55%), Positives = 38/56 (67%)
 Frame = -1

Query: 171 NCMDCGWIAPGLSRKCLPHEAEEFLLKIRSEGFGCDMSTLSALMLCYANSRLLSEA 4
           N  DC  +  GLSRK LP  AE  +L+++SEGF  D STLSALMLCYA + L  +A
Sbjct: 12  NYRDCASLIQGLSRKKLPVAAERLVLEMKSEGFVPDSSTLSALMLCYATNGLFCKA 67