BLASTX nr result
ID: Catharanthus22_contig00025898
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Catharanthus22_contig00025898
(267 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis] 97 2e-18
gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|1337118... 91 1e-17
emb|CAN61272.1| hypothetical protein VITISV_039063 [Vitis vinifera] 91 1e-16
emb|CAN65222.1| hypothetical protein VITISV_038665 [Vitis vinifera] 91 1e-16
gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subc... 91 1e-16
gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-... 91 1e-16
emb|CAH66122.1| OSIGBa0146N20.7 [Oryza sativa Indica Group] 91 1e-16
gb|AAR87163.1| putative polyprotein [Oryza sativa Japonica Group... 88 3e-16
gb|AAT01387.1| putative polyprotein [Oryza sativa Japonica Group... 87 4e-16
gb|AAX96781.1| retrotransposon protein, putative, Ty1-copia sub-... 89 6e-16
emb|CAD40782.2| OSJNBb0012E08.6 [Oryza sativa Japonica Group] 86 1e-15
gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subc... 88 1e-15
gb|AAD19773.1| putative retroelement pol polyprotein [Arabidopsi... 87 2e-15
gb|ABA97637.1| retrotransposon protein, putative, Ty1-copia subc... 85 2e-15
gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group] 84 3e-15
emb|CAJ86151.1| H0413E07.4 [Oryza sativa Indica Group] 84 3e-15
emb|CAJ86192.1| H0306F03.15 [Oryza sativa Indica Group] 84 3e-15
emb|CAE03834.3| OSJNBb0013J13.11 [Oryza sativa Japonica Group] 84 4e-15
gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-... 83 7e-15
gb|AAP54315.2| retrotransposon protein, putative, Ty1-copia subc... 83 7e-15
>emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis]
Length = 1334
Score = 97.4 bits (241), Expect = 2e-18
Identities = 46/81 (56%), Positives = 63/81 (77%)
Frame = +2
Query: 23 MIKAGFVKNNYDSCLYFCGDNVETAIYLLLYVDDMLVACKHRDKITRLKSLLKSEFDMKD 202
M+ G+ ++ YDSC+YF G + YLLLYVDDML+A K++ +I RLK+LLK+EF+MKD
Sbjct: 982 MVSKGYRRSRYDSCVYFGGSDQGGVAYLLLYVDDMLIASKYKSEIERLKNLLKAEFEMKD 1041
Query: 203 LGSASRILGMNISRDRADRSL 265
LG+A RILGM+I RDR+ +L
Sbjct: 1042 LGNAKRILGMDIIRDRSAGTL 1062
>gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|133711819|gb|ABO36636.1|
copia LTR rider [Solanum lycopersicum]
Length = 1307
Score = 90.9 bits (224), Expect(2) = 1e-17
Identities = 43/81 (53%), Positives = 60/81 (74%)
Frame = +2
Query: 23 MIKAGFVKNNYDSCLYFCGDNVETAIYLLLYVDDMLVACKHRDKITRLKSLLKSEFDMKD 202
M+K G+ +++YD C+Y+ N ++ IYL+LYVDDML+A K + I +LK LL +EF+MKD
Sbjct: 959 MVKLGYTRSSYDCCVYYNRLNDDSFIYLVLYVDDMLIAAKKKYDIQKLKGLLSAEFEMKD 1018
Query: 203 LGSASRILGMNISRDRADRSL 265
LG+A +ILGM I RDR R L
Sbjct: 1019 LGAARKILGMEIIRDRERRKL 1039
Score = 24.3 bits (51), Expect(2) = 1e-17
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +1
Query: 1 WYKRFDSY 24
WYKRFDSY
Sbjct: 951 WYKRFDSY 958
>emb|CAN61272.1| hypothetical protein VITISV_039063 [Vitis vinifera]
Length = 1643
Score = 90.5 bits (223), Expect(2) = 1e-16
Identities = 45/76 (59%), Positives = 57/76 (75%)
Frame = +2
Query: 23 MIKAGFVKNNYDSCLYFCGDNVETAIYLLLYVDDMLVACKHRDKITRLKSLLKSEFDMKD 202
M+ F++N YDSC+YF + IYLLLYVDDML+A K+R +I +LK LL SEF+MKD
Sbjct: 1283 MVSHEFMRNQYDSCVYFKTLPDGSFIYLLLYVDDMLIAAKNRAEINKLKQLLSSEFEMKD 1342
Query: 203 LGSASRILGMNISRDR 250
LG+A +ILGM I RDR
Sbjct: 1343 LGAAKKILGMEIWRDR 1358
Score = 21.6 bits (44), Expect(2) = 1e-16
Identities = 6/8 (75%), Positives = 8/8 (100%)
Frame = +1
Query: 1 WYKRFDSY 24
WYKRFD++
Sbjct: 1275 WYKRFDAF 1282
>emb|CAN65222.1| hypothetical protein VITISV_038665 [Vitis vinifera]
Length = 1562
Score = 90.5 bits (223), Expect(2) = 1e-16
Identities = 45/76 (59%), Positives = 57/76 (75%)
Frame = +2
Query: 23 MIKAGFVKNNYDSCLYFCGDNVETAIYLLLYVDDMLVACKHRDKITRLKSLLKSEFDMKD 202
M+ F++N YDSC+YF + IYLLLYVDDML+A K+R +I +LK LL SEF+MKD
Sbjct: 1082 MVSHEFMRNQYDSCVYFKTLPDGSFIYLLLYVDDMLIAAKNRAEINKLKQLLSSEFEMKD 1141
Query: 203 LGSASRILGMNISRDR 250
LG+A +ILGM I RDR
Sbjct: 1142 LGAAKKILGMEIWRDR 1157
Score = 21.6 bits (44), Expect(2) = 1e-16
Identities = 6/8 (75%), Positives = 8/8 (100%)
Frame = +1
Query: 1 WYKRFDSY 24
WYKRFD++
Sbjct: 1074 WYKRFDAF 1081
>gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1333
Score = 91.3 bits (225), Expect = 1e-16
Identities = 47/78 (60%), Positives = 58/78 (74%)
Frame = +2
Query: 17 TLMIKAGFVKNNYDSCLYFCGDNVETAIYLLLYVDDMLVACKHRDKITRLKSLLKSEFDM 196
+ M+ F ++ YDSC+Y N + IYLLLYVDDML+A K + +IT+LK LL SEFDM
Sbjct: 983 SFMLSHSFKRSKYDSCVYIKHVN-GSPIYLLLYVDDMLIAAKSKIEITKLKKLLSSEFDM 1041
Query: 197 KDLGSASRILGMNISRDR 250
KDLGSA +ILGM ISRDR
Sbjct: 1042 KDLGSAKKILGMEISRDR 1059
>gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
Japonica Group] gi|77549942|gb|ABA92739.1|
retrotransposon protein, putative, Ty1-copia subclass
[Oryza sativa Japonica Group]
Length = 1373
Score = 91.3 bits (225), Expect = 1e-16
Identities = 47/78 (60%), Positives = 58/78 (74%)
Frame = +2
Query: 17 TLMIKAGFVKNNYDSCLYFCGDNVETAIYLLLYVDDMLVACKHRDKITRLKSLLKSEFDM 196
+ M+ F ++ YDSC+Y N + IYLLLYVDDML+A K + +IT+LK LL SEFDM
Sbjct: 983 SFMLSHSFKRSKYDSCVYIKHVN-GSPIYLLLYVDDMLIAAKSKIEITKLKKLLSSEFDM 1041
Query: 197 KDLGSASRILGMNISRDR 250
KDLGSA +ILGM ISRDR
Sbjct: 1042 KDLGSAKKILGMEISRDR 1059
>emb|CAH66122.1| OSIGBa0146N20.7 [Oryza sativa Indica Group]
Length = 1335
Score = 91.3 bits (225), Expect = 1e-16
Identities = 47/78 (60%), Positives = 58/78 (74%)
Frame = +2
Query: 17 TLMIKAGFVKNNYDSCLYFCGDNVETAIYLLLYVDDMLVACKHRDKITRLKSLLKSEFDM 196
+ M+ F ++ YDSC+Y N + IYLLLYVDDML+A K + +IT+LK LL SEFDM
Sbjct: 985 SFMLSHSFKRSKYDSCVYIKHVN-GSPIYLLLYVDDMLIAAKSKIEITKLKKLLSSEFDM 1043
Query: 197 KDLGSASRILGMNISRDR 250
KDLGSA +ILGM ISRDR
Sbjct: 1044 KDLGSAKKILGMEISRDR 1061
>gb|AAR87163.1| putative polyprotein [Oryza sativa Japonica Group]
gi|53370655|gb|AAU89150.1| integrase core domain
containing protein [Oryza sativa Japonica Group]
gi|108710286|gb|ABF98081.1| retrotransposon protein,
putative, Ty1-copia subclass [Oryza sativa Japonica
Group]
Length = 1322
Score = 87.8 bits (216), Expect(2) = 3e-16
Identities = 44/78 (56%), Positives = 58/78 (74%)
Frame = +2
Query: 17 TLMIKAGFVKNNYDSCLYFCGDNVETAIYLLLYVDDMLVACKHRDKITRLKSLLKSEFDM 196
+ M+ GF ++ +DSC+Y N + IYLLLYVDDML+A K +++IT LK L SEFDM
Sbjct: 972 SFMLSHGFKRSEFDSCVYIKFVN-GSPIYLLLYVDDMLIAAKSKEQITTLKKQLSSEFDM 1030
Query: 197 KDLGSASRILGMNISRDR 250
KDLG+A +ILGM I+RDR
Sbjct: 1031 KDLGAAKKILGMEITRDR 1048
Score = 22.7 bits (47), Expect(2) = 3e-16
Identities = 7/8 (87%), Positives = 8/8 (100%)
Frame = +1
Query: 1 WYKRFDSY 24
WYKRFDS+
Sbjct: 966 WYKRFDSF 973
>gb|AAT01387.1| putative polyprotein [Oryza sativa Japonica Group]
gi|48475101|gb|AAT44170.1| putative polyprotein [Oryza
sativa Japonica Group]
Length = 1175
Score = 87.4 bits (215), Expect(2) = 4e-16
Identities = 44/78 (56%), Positives = 58/78 (74%)
Frame = +2
Query: 17 TLMIKAGFVKNNYDSCLYFCGDNVETAIYLLLYVDDMLVACKHRDKITRLKSLLKSEFDM 196
+ M+ GF ++ +DSC+Y NV + IYLLLYVDDML+A K +++IT LK L SEFDM
Sbjct: 825 SFMLSHGFKRSEFDSCVYIKFVNV-SPIYLLLYVDDMLIAAKSKEQITTLKKQLSSEFDM 883
Query: 197 KDLGSASRILGMNISRDR 250
KDL +A +ILGM I+RDR
Sbjct: 884 KDLDAAKKILGMEITRDR 901
Score = 22.7 bits (47), Expect(2) = 4e-16
Identities = 7/8 (87%), Positives = 8/8 (100%)
Frame = +1
Query: 1 WYKRFDSY 24
WYKRFDS+
Sbjct: 819 WYKRFDSF 826
>gb|AAX96781.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
Japonica Group] gi|77549746|gb|ABA92543.1|
retrotransposon protein, putative, Ty1-copia subclass,
expressed [Oryza sativa Japonica Group]
Length = 1170
Score = 89.0 bits (219), Expect = 6e-16
Identities = 43/80 (53%), Positives = 62/80 (77%)
Frame = +2
Query: 17 TLMIKAGFVKNNYDSCLYFCGDNVETAIYLLLYVDDMLVACKHRDKITRLKSLLKSEFDM 196
+ M+ F ++NYDSC+Y + T IYLLLYVDDML+A KH+ +I++LK+ L SEF+M
Sbjct: 910 SFMLSQKFRRSNYDSCVYLKVVDGST-IYLLLYVDDMLIAAKHKSEISKLKAQLTSEFEM 968
Query: 197 KDLGSASRILGMNISRDRAD 256
KDLG+A +ILGM I+R+++D
Sbjct: 969 KDLGAAKKILGMEITREKSD 988
>emb|CAD40782.2| OSJNBb0012E08.6 [Oryza sativa Japonica Group]
Length = 375
Score = 85.9 bits (211), Expect(2) = 1e-15
Identities = 43/78 (55%), Positives = 58/78 (74%)
Frame = +2
Query: 17 TLMIKAGFVKNNYDSCLYFCGDNVETAIYLLLYVDDMLVACKHRDKITRLKSLLKSEFDM 196
+ M+ GF ++ +DSC+Y N + IYLLLYVDDML+A K +++IT LK L SEFDM
Sbjct: 39 SFMLSHGFKRSEFDSCVYIKFVN-GSPIYLLLYVDDMLIAAKSKEQITTLKKQLSSEFDM 97
Query: 197 KDLGSASRILGMNISRDR 250
K+LG+A +ILGM I+RDR
Sbjct: 98 KNLGAAKKILGMEITRDR 115
Score = 22.7 bits (47), Expect(2) = 1e-15
Identities = 7/8 (87%), Positives = 8/8 (100%)
Frame = +1
Query: 1 WYKRFDSY 24
WYKRFDS+
Sbjct: 33 WYKRFDSF 40
>gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1333
Score = 87.8 bits (216), Expect = 1e-15
Identities = 46/78 (58%), Positives = 57/78 (73%)
Frame = +2
Query: 17 TLMIKAGFVKNNYDSCLYFCGDNVETAIYLLLYVDDMLVACKHRDKITRLKSLLKSEFDM 196
+ M+ F ++ YDSC+Y N + IYLLLYVDDML+A K + +IT+LK LL SEFDM
Sbjct: 983 SFMLSHSFKRSKYDSCVYIKHVN-GSPIYLLLYVDDMLIAAKSKIEITKLKKLLSSEFDM 1041
Query: 197 KDLGSASRILGMNISRDR 250
KDLGSA +IL M ISRDR
Sbjct: 1042 KDLGSAKKILVMEISRDR 1059
>gb|AAD19773.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1335
Score = 87.4 bits (215), Expect = 2e-15
Identities = 41/71 (57%), Positives = 53/71 (74%)
Frame = +2
Query: 38 FVKNNYDSCLYFCGDNVETAIYLLLYVDDMLVACKHRDKITRLKSLLKSEFDMKDLGSAS 217
+ ++ YDSC+YF N +T IYLLLYVDDML+A ++ ++ LK LL EF+MKDLG A
Sbjct: 989 YTRSAYDSCVYFKKCNGDTYIYLLLYVDDMLIASANKSEVNELKQLLSREFEMKDLGDAK 1048
Query: 218 RILGMNISRDR 250
+ILGM ISRDR
Sbjct: 1049 KILGMEISRDR 1059
>gb|ABA97637.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1278
Score = 85.1 bits (209), Expect(2) = 2e-15
Identities = 42/78 (53%), Positives = 58/78 (74%)
Frame = +2
Query: 17 TLMIKAGFVKNNYDSCLYFCGDNVETAIYLLLYVDDMLVACKHRDKITRLKSLLKSEFDM 196
+ M+ GF ++ +DSC+Y N + IYLLLYVDD+L+A K +++IT LK L SEFDM
Sbjct: 972 SFMLSHGFKRSEFDSCVYIKFVN-GSPIYLLLYVDDILIAAKSKEQITTLKKQLSSEFDM 1030
Query: 197 KDLGSASRILGMNISRDR 250
KDLG+A +ILGM I+RD+
Sbjct: 1031 KDLGAAKKILGMEITRDK 1048
Score = 22.7 bits (47), Expect(2) = 2e-15
Identities = 7/8 (87%), Positives = 8/8 (100%)
Frame = +1
Query: 1 WYKRFDSY 24
WYKRFDS+
Sbjct: 966 WYKRFDSF 973
>gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1241
Score = 84.3 bits (207), Expect(2) = 3e-15
Identities = 42/78 (53%), Positives = 59/78 (75%)
Frame = +2
Query: 17 TLMIKAGFVKNNYDSCLYFCGDNVETAIYLLLYVDDMLVACKHRDKITRLKSLLKSEFDM 196
+ M+ F ++NYDSC+Y + +AIYLLLYVDDML+A K + +I +LK+ L SEF+M
Sbjct: 891 SFMLSQKFRRSNYDSCVYLKVVD-GSAIYLLLYVDDMLIAAKDKSEIAKLKAQLSSEFEM 949
Query: 197 KDLGSASRILGMNISRDR 250
KDLG+A +ILGM I+R+R
Sbjct: 950 KDLGAAKKILGMEITRER 967
Score = 22.7 bits (47), Expect(2) = 3e-15
Identities = 7/8 (87%), Positives = 8/8 (100%)
Frame = +1
Query: 1 WYKRFDSY 24
WYKRFDS+
Sbjct: 885 WYKRFDSF 892
>emb|CAJ86151.1| H0413E07.4 [Oryza sativa Indica Group]
Length = 1205
Score = 84.3 bits (207), Expect(2) = 3e-15
Identities = 42/78 (53%), Positives = 59/78 (75%)
Frame = +2
Query: 17 TLMIKAGFVKNNYDSCLYFCGDNVETAIYLLLYVDDMLVACKHRDKITRLKSLLKSEFDM 196
+ M+ F ++NYDSC+Y + +AIYLLLYVDDML+A K + +I +LK+ L SEF+M
Sbjct: 908 SFMLSQKFRRSNYDSCVYLKVVD-GSAIYLLLYVDDMLIAAKDKSEIAKLKAQLSSEFEM 966
Query: 197 KDLGSASRILGMNISRDR 250
KDLG+A +ILGM I+R+R
Sbjct: 967 KDLGAAKKILGMEITRER 984
Score = 22.7 bits (47), Expect(2) = 3e-15
Identities = 7/8 (87%), Positives = 8/8 (100%)
Frame = +1
Query: 1 WYKRFDSY 24
WYKRFDS+
Sbjct: 902 WYKRFDSF 909
>emb|CAJ86192.1| H0306F03.15 [Oryza sativa Indica Group]
Length = 1037
Score = 84.3 bits (207), Expect(2) = 3e-15
Identities = 42/78 (53%), Positives = 59/78 (75%)
Frame = +2
Query: 17 TLMIKAGFVKNNYDSCLYFCGDNVETAIYLLLYVDDMLVACKHRDKITRLKSLLKSEFDM 196
+ M+ F ++NYDSC+Y + +AIYLLLYVDDML+A K + +I +LK+ L SEF+M
Sbjct: 740 SFMLSQKFRRSNYDSCVYLKVVD-GSAIYLLLYVDDMLIAAKDKSEIAKLKAQLSSEFEM 798
Query: 197 KDLGSASRILGMNISRDR 250
KDLG+A +ILGM I+R+R
Sbjct: 799 KDLGAAKKILGMEITRER 816
Score = 22.7 bits (47), Expect(2) = 3e-15
Identities = 7/8 (87%), Positives = 8/8 (100%)
Frame = +1
Query: 1 WYKRFDSY 24
WYKRFDS+
Sbjct: 734 WYKRFDSF 741
>emb|CAE03834.3| OSJNBb0013J13.11 [Oryza sativa Japonica Group]
Length = 576
Score = 84.0 bits (206), Expect(2) = 4e-15
Identities = 43/77 (55%), Positives = 56/77 (72%)
Frame = +2
Query: 17 TLMIKAGFVKNNYDSCLYFCGDNVETAIYLLLYVDDMLVACKHRDKITRLKSLLKSEFDM 196
+ M+ GF + +DSC+Y N + IYLLLYVDDML+A K +++IT LK L SEFDM
Sbjct: 305 SFMLSHGFKWSEFDSCVYIKFVN-GSPIYLLLYVDDMLIAAKSKEQITTLKKQLSSEFDM 363
Query: 197 KDLGSASRILGMNISRD 247
KDLG+A +ILGM I+RD
Sbjct: 364 KDLGAAKKILGMEITRD 380
Score = 22.7 bits (47), Expect(2) = 4e-15
Identities = 7/8 (87%), Positives = 8/8 (100%)
Frame = +1
Query: 1 WYKRFDSY 24
WYKRFDS+
Sbjct: 299 WYKRFDSF 306
>gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
Japonica Group] gi|77548751|gb|ABA91548.1|
retrotransposon protein, putative, Ty1-copia subclass
[Oryza sativa Japonica Group]
Length = 2340
Score = 83.2 bits (204), Expect(2) = 7e-15
Identities = 42/78 (53%), Positives = 58/78 (74%)
Frame = +2
Query: 17 TLMIKAGFVKNNYDSCLYFCGDNVETAIYLLLYVDDMLVACKHRDKITRLKSLLKSEFDM 196
+ M+ F ++NYDSC+Y + +AIYLLLYVDDML+A K + +I +LK+ L SEF+M
Sbjct: 1189 SFMLSQKFRRSNYDSCVYLKVVD-GSAIYLLLYVDDMLIAAKDKSEIAKLKAQLSSEFEM 1247
Query: 197 KDLGSASRILGMNISRDR 250
KDLG+A +ILGM I+R R
Sbjct: 1248 KDLGAAKKILGMEITRKR 1265
Score = 22.7 bits (47), Expect(2) = 7e-15
Identities = 7/8 (87%), Positives = 8/8 (100%)
Frame = +1
Query: 1 WYKRFDSY 24
WYKRFDS+
Sbjct: 1183 WYKRFDSF 1190
>gb|AAP54315.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1312
Score = 83.2 bits (204), Expect(2) = 7e-15
Identities = 42/78 (53%), Positives = 58/78 (74%)
Frame = +2
Query: 17 TLMIKAGFVKNNYDSCLYFCGDNVETAIYLLLYVDDMLVACKHRDKITRLKSLLKSEFDM 196
+ M+ F ++NYDSC+Y + +AIYLLLYVDDML+A K + +I +LK+ L SEF M
Sbjct: 1017 SFMLSQKFRRSNYDSCVYLKVVD-GSAIYLLLYVDDMLIAAKDKSEIAKLKAQLSSEFGM 1075
Query: 197 KDLGSASRILGMNISRDR 250
KDLG+A +ILGM I+R+R
Sbjct: 1076 KDLGAAKKILGMEITRER 1093
Score = 22.7 bits (47), Expect(2) = 7e-15
Identities = 7/8 (87%), Positives = 8/8 (100%)
Frame = +1
Query: 1 WYKRFDSY 24
WYKRFDS+
Sbjct: 1011 WYKRFDSF 1018