BLASTX nr result
ID: Catharanthus22_contig00025894
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Catharanthus22_contig00025894
(400 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAC26250.1| contains similarity to reverse transcriptase (Pfa... 117 2e-24
dbj|BAA22288.1| polyprotein [Oryza australiensis] 115 6e-24
gb|ABA97705.1| retrotransposon protein, putative, Ty1-copia subc... 106 3e-21
emb|CAE04463.2| OSJNBa0029L02.4 [Oryza sativa Japonica Group] 103 2e-20
emb|CAE03845.1| OSJNBb0089K06.4 [Oryza sativa Japonica Group] 103 2e-20
gb|ABA98367.2| retrotransposon protein, putative, Ty1-copia subc... 102 5e-20
gb|EMS60921.1| hypothetical protein TRIUR3_17552 [Triticum urartu] 102 7e-20
gb|AAV85747.1| Integrase core domain, putative [Oryza sativa Jap... 102 7e-20
gb|ABG22008.1| retrotransposon protein, putative, Ty1-copia subc... 101 9e-20
gb|ABA97342.2| retrotransposon protein, putative, Ty1-copia subc... 98 1e-18
emb|CAE02400.1| OSJNBa0024J22.4 [Oryza sativa Japonica Group] gi... 98 1e-18
gb|AAO37490.1| putative gag-pol polyprotein [Oryza sativa Japoni... 97 3e-18
gb|AAM74249.1|AC074355_11 Putative retroelement [Oryza sativa Ja... 97 3e-18
gb|ABF96975.1| retrotransposon protein, putative, Ty1-copia subc... 97 3e-18
gb|ADB85430.1| putative retrotransposon protein [Phyllostachys e... 95 1e-17
gb|EMS67284.1| Spastin [Triticum urartu] 94 1e-17
gb|AAP52343.2| retrotransposon protein, putative, Ty1-copia subc... 94 1e-17
gb|AAD17357.1| contains similarity to retrovirus-related polypro... 94 2e-17
gb|EMT21951.1| ABC transporter C family member 10 [Aegilops taus... 92 9e-17
gb|EMS50467.1| Retrovirus-related Pol polyprotein from transposo... 91 1e-16
>gb|AAC26250.1| contains similarity to reverse transcriptase (Pfam: rvt.hmm, score
19.29) [Arabidopsis thaliana] gi|7267136|emb|CAB80804.1|
putative retrotransposon protein [Arabidopsis thaliana]
Length = 964
Score = 117 bits (292), Expect = 2e-24
Identities = 62/133 (46%), Positives = 81/133 (60%), Gaps = 1/133 (0%)
Frame = +2
Query: 2 GCDAYVKRSLSEKLAHKSDKCLFVGYPKETKGYYFYLPSENKVFVARNGIFLEREFISKR 181
GC++Y KR +++KL KSDKC FVGYPKETKGYYFY P++NKVFV RNG FLEREF+SK
Sbjct: 310 GCESYAKRLITDKLGPKSDKCYFVGYPKETKGYYFYHPTDNKVFVVRNGAFLEREFLSKG 369
Query: 182 VSGSRIHLEEA-QGQQTISEPSMDTQLDSRIHTELEPLTQGXXXXXXXXXXXXXYRFLVT 358
SGS++ LEE + Q + + QLD R E + +R V
Sbjct: 370 TSGSKVLLEEVREPQGDVPTSQEEHQLDLRRVVEPILVEPEVRRSERSRHEPDRFRDWVM 429
Query: 359 EDHNIDLIDQGEP 397
+DH + +I+ EP
Sbjct: 430 DDHALFMIESDEP 442
>dbj|BAA22288.1| polyprotein [Oryza australiensis]
Length = 1317
Score = 115 bits (288), Expect = 6e-24
Identities = 62/132 (46%), Positives = 78/132 (59%)
Frame = +2
Query: 2 GCDAYVKRSLSEKLAHKSDKCLFVGYPKETKGYYFYLPSENKVFVARNGIFLEREFISKR 181
GC+AYVKR S+KL KSDKC VGYPKETKGYYFY + KVFVAR+G+FLE+EF+S+R
Sbjct: 666 GCEAYVKRLQSDKLTPKSDKCFVVGYPKETKGYYFYNREQAKVFVARHGVFLEKEFLSRR 725
Query: 182 VSGSRIHLEEAQGQQTISEPSMDTQLDSRIHTELEPLTQGXXXXXXXXXXXXXYRFLVTE 361
VSG R+HLEE Q+T S T+ + P+ R+ E
Sbjct: 726 VSGIRVHLEEV--QETPETVSATTEPQQEDQSVAPPVVDTPAPRRSERSRRAPDRYTGAE 783
Query: 362 DHNIDLIDQGEP 397
+I L+D EP
Sbjct: 784 QRDILLLDNDEP 795
>gb|ABA97705.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 810
Score = 106 bits (265), Expect = 3e-21
Identities = 62/140 (44%), Positives = 78/140 (55%), Gaps = 8/140 (5%)
Frame = +2
Query: 2 GCDAYVKRSLSEKLAHKSDKCLFVGYPKETKGYYFYLPSENKVFVARNGIFLEREFISKR 181
GC+ YVKR S+KL KSDKC FVGY KETKGYYFY E KVFVAR+G+FLE+EFIS++
Sbjct: 362 GCEVYVKRLQSDKLTPKSDKCFFVGYHKETKGYYFYNREEGKVFVARHGVFLEKEFISRK 421
Query: 182 VSGSRIHLEEAQ----GQQTISEPSMDTQ--LDSRIHTELEPLTQ--GXXXXXXXXXXXX 337
SGS + LEE Q T ++P Q + +EP+ +
Sbjct: 422 DSGSMVRLEEIQETPENASTSTQPQQAEQDVVQQVEQVVVEPVVEALASRRSKRIRRTPA 481
Query: 338 XYRFLVTEDHNIDLIDQGEP 397
Y L T +I L+D EP
Sbjct: 482 RYALLTTGQRDILLLDNDEP 501
>emb|CAE04463.2| OSJNBa0029L02.4 [Oryza sativa Japonica Group]
Length = 746
Score = 103 bits (258), Expect = 2e-20
Identities = 59/140 (42%), Positives = 79/140 (56%), Gaps = 8/140 (5%)
Frame = +2
Query: 2 GCDAYVKRSLSEKLAHKSDKCLFVGYPKETKGYYFYLPSENKVFVARNGIFLEREFISKR 181
G + YVKR S+KL KSDKC FVGYPKE KGYYFY E KVF+AR+G+FL +EFIS++
Sbjct: 296 GYEVYVKRLQSDKLTPKSDKCFFVGYPKEKKGYYFYNREEGKVFIARHGVFLGKEFISRK 355
Query: 182 VSGSRIHLEEAQ-GQQTISEPSMDTQLDSRIHTE-----LEPLTQ--GXXXXXXXXXXXX 337
SGS + LEE Q + +S + Q + + + +EP+ +
Sbjct: 356 DSGSMVGLEEIQETPENVSRSTQPQQAEQDVAQQVEQVVVEPVVEALASQRFERIRRTPA 415
Query: 338 XYRFLVTEDHNIDLIDQGEP 397
Y L T H+I L+D EP
Sbjct: 416 RYALLTTGQHDILLLDNDEP 435
>emb|CAE03845.1| OSJNBb0089K06.4 [Oryza sativa Japonica Group]
Length = 873
Score = 103 bits (258), Expect = 2e-20
Identities = 52/85 (61%), Positives = 61/85 (71%)
Frame = +2
Query: 2 GCDAYVKRSLSEKLAHKSDKCLFVGYPKETKGYYFYLPSENKVFVARNGIFLEREFISKR 181
GC+ YVKR S+KL KSDKC FVGYPKETKGYYFY E KVFVAR+ +FLE+EFIS++
Sbjct: 460 GCEVYVKRLQSDKLTPKSDKCFFVGYPKETKGYYFYNREEGKVFVARHSVFLEKEFISRK 519
Query: 182 VSGSRIHLEEAQGQQTISEPSMDTQ 256
SGS + EE Q+T S TQ
Sbjct: 520 DSGSMVRPEEI--QETPENASTSTQ 542
>gb|ABA98367.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1745
Score = 102 bits (254), Expect = 5e-20
Identities = 51/85 (60%), Positives = 62/85 (72%)
Frame = +2
Query: 2 GCDAYVKRSLSEKLAHKSDKCLFVGYPKETKGYYFYLPSENKVFVARNGIFLEREFISKR 181
GC+ YVKR S+KL KS+KC FVGYPKETKGYY Y E KVFVAR+G+FL++EFIS++
Sbjct: 1142 GCEVYVKRLQSDKLTPKSNKCFFVGYPKETKGYYLYNREEGKVFVARHGVFLKKEFISRK 1201
Query: 182 VSGSRIHLEEAQGQQTISEPSMDTQ 256
SGS + LEE Q+T S TQ
Sbjct: 1202 DSGSIVRLEEI--QETPENASTSTQ 1224
>gb|EMS60921.1| hypothetical protein TRIUR3_17552 [Triticum urartu]
Length = 419
Score = 102 bits (253), Expect = 7e-20
Identities = 45/70 (64%), Positives = 57/70 (81%)
Frame = +2
Query: 2 GCDAYVKRSLSEKLAHKSDKCLFVGYPKETKGYYFYLPSENKVFVARNGIFLEREFISKR 181
GCDAYVK+ EKL KS+KC+F+GYPKET GY FYL SE K+FVA+NG FLE+EF+SK
Sbjct: 64 GCDAYVKKLQPEKLEPKSEKCVFIGYPKETVGYTFYLRSEGKIFVAKNGSFLEKEFLSKE 123
Query: 182 VSGSRIHLEE 211
+SG ++ L+E
Sbjct: 124 ISGRKVELDE 133
>gb|AAV85747.1| Integrase core domain, putative [Oryza sativa Japonica Group]
gi|62701883|gb|AAX92956.1| retrotransposon protein,
putative, Ty1-copia sub-class [Oryza sativa Japonica
Group] gi|108864259|gb|ABA92827.2| retrotransposon
protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1184
Score = 102 bits (253), Expect = 7e-20
Identities = 49/91 (53%), Positives = 61/91 (67%)
Frame = +2
Query: 2 GCDAYVKRSLSEKLAHKSDKCLFVGYPKETKGYYFYLPSENKVFVARNGIFLEREFISKR 181
GC+ YVKR S+KL KSDKC FVGYPKETKGYYFY E KVFVAR+G+FLE+EFIS++
Sbjct: 642 GCEVYVKRLQSDKLTPKSDKCFFVGYPKETKGYYFYNQEEGKVFVARHGVFLEKEFISRK 701
Query: 182 VSGSRIHLEEAQGQQTISEPSMDTQLDSRIH 274
GS + + +P T +D +H
Sbjct: 702 DIGSMLWKHRFR-----EDPKKKTDVDGNVH 727
>gb|ABG22008.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 932
Score = 101 bits (252), Expect = 9e-20
Identities = 60/140 (42%), Positives = 77/140 (55%), Gaps = 8/140 (5%)
Frame = +2
Query: 2 GCDAYVKRSLSEKLAHKSDKCLFVGYPKETKGYYFYLPSENKVFVARNGIFLEREFISKR 181
GC+ YVKR S+KL KSDK FVGYPKETKGYYFY E+KVFVAR+ +FLE+EFIS +
Sbjct: 337 GCEVYVKRLQSDKLTPKSDKYFFVGYPKETKGYYFYNREEDKVFVARHDVFLEKEFISTK 396
Query: 182 VSGSRIHLEEAQ----GQQTISEPSMDTQ--LDSRIHTELEPLTQ--GXXXXXXXXXXXX 337
SG + LEE Q T ++P D Q + +EP+ +
Sbjct: 397 DSGIMVRLEEIQETPKNASTSTQPQQDEQDVVQQVEQVVVEPVVEAPASRRSERIWRTPA 456
Query: 338 XYRFLVTEDHNIDLIDQGEP 397
Y L T +I L+D +P
Sbjct: 457 RYALLTTGQRDILLLDNDKP 476
>gb|ABA97342.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1050
Score = 98.2 bits (243), Expect = 1e-18
Identities = 45/66 (68%), Positives = 53/66 (80%)
Frame = +2
Query: 2 GCDAYVKRSLSEKLAHKSDKCLFVGYPKETKGYYFYLPSENKVFVARNGIFLEREFISKR 181
GC+ YVKR S+KL KSDKC FVGYPKETKGYYFY E KVFVAR+G+FLE+EFI ++
Sbjct: 462 GCEVYVKRLQSDKLTPKSDKCFFVGYPKETKGYYFYNREEGKVFVARHGVFLEKEFILRK 521
Query: 182 VSGSRI 199
SGS +
Sbjct: 522 NSGSML 527
>emb|CAE02400.1| OSJNBa0024J22.4 [Oryza sativa Japonica Group]
gi|38347202|emb|CAD40526.2| OSJNBa0023J03.14 [Oryza
sativa Japonica Group] gi|116308930|emb|CAH66059.1|
OSIGBa0125J07.8 [Oryza sativa Indica Group]
gi|116309043|emb|CAH66155.1| OSIGBa0113B06.1 [Oryza
sativa Indica Group]
Length = 704
Score = 98.2 bits (243), Expect = 1e-18
Identities = 45/66 (68%), Positives = 53/66 (80%)
Frame = +2
Query: 2 GCDAYVKRSLSEKLAHKSDKCLFVGYPKETKGYYFYLPSENKVFVARNGIFLEREFISKR 181
GC+ YVKR S+KL KSDKC FVGYPKETKGYYFY E KVFVAR+ +FLE+EFIS++
Sbjct: 249 GCEVYVKRLQSDKLTTKSDKCFFVGYPKETKGYYFYNRKEGKVFVARHSVFLEKEFISRK 308
Query: 182 VSGSRI 199
SGS +
Sbjct: 309 DSGSML 314
>gb|AAO37490.1| putative gag-pol polyprotein [Oryza sativa Japonica Group]
gi|41393192|gb|AAS01915.1| putative polyprotein [Oryza
sativa Japonica Group]
Length = 547
Score = 96.7 bits (239), Expect = 3e-18
Identities = 44/66 (66%), Positives = 53/66 (80%)
Frame = +2
Query: 2 GCDAYVKRSLSEKLAHKSDKCLFVGYPKETKGYYFYLPSENKVFVARNGIFLEREFISKR 181
GC+ YVKR S+KL KSDKC FVGYPKETKGYYFY E KVFVAR+ +FL++EFIS++
Sbjct: 57 GCEVYVKRLQSDKLTPKSDKCFFVGYPKETKGYYFYNREEGKVFVARHSVFLKKEFISRK 116
Query: 182 VSGSRI 199
SGS +
Sbjct: 117 DSGSML 122
>gb|AAM74249.1|AC074355_11 Putative retroelement [Oryza sativa Japonica Group]
Length = 700
Score = 96.7 bits (239), Expect = 3e-18
Identities = 49/87 (56%), Positives = 61/87 (70%), Gaps = 2/87 (2%)
Frame = +2
Query: 2 GCDAYVKRSLSEKLA--HKSDKCLFVGYPKETKGYYFYLPSENKVFVARNGIFLEREFIS 175
GC+ YVKR S+KL KSDKC FVGYPKETKGYYFY E KVFVAR+G+FLE++FIS
Sbjct: 215 GCEVYVKRLQSDKLTPKSKSDKCFFVGYPKETKGYYFYNREEGKVFVARHGVFLEKKFIS 274
Query: 176 KRVSGSRIHLEEAQGQQTISEPSMDTQ 256
++ SGS +E + T ++P Q
Sbjct: 275 RKDSGS---METPENASTSTQPQQAEQ 298
>gb|ABF96975.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 562
Score = 96.7 bits (239), Expect = 3e-18
Identities = 44/66 (66%), Positives = 53/66 (80%)
Frame = +2
Query: 2 GCDAYVKRSLSEKLAHKSDKCLFVGYPKETKGYYFYLPSENKVFVARNGIFLEREFISKR 181
GC+ YVKR S+KL KSDKC FVGYPKETKGYYFY E KVFVAR+ +FL++EFIS++
Sbjct: 57 GCEVYVKRLQSDKLTPKSDKCFFVGYPKETKGYYFYNREEGKVFVARHSVFLKKEFISRK 116
Query: 182 VSGSRI 199
SGS +
Sbjct: 117 DSGSML 122
>gb|ADB85430.1| putative retrotransposon protein [Phyllostachys edulis]
Length = 896
Score = 94.7 bits (234), Expect = 1e-17
Identities = 47/82 (57%), Positives = 61/82 (74%), Gaps = 1/82 (1%)
Frame = +2
Query: 38 KLAHKSDKCLFVGYPKETKGYYFYLPSENKVFVARNGIFLEREFISKRVSGSRIHLEE-A 214
KL KSDKC F+GYP+ETKGYYFY E+KVFVARNG+FLE+EF+SK VSG ++ LEE
Sbjct: 362 KLTPKSDKCFFIGYPRETKGYYFYNREEDKVFVARNGVFLEKEFLSKGVSGRKVRLEEIR 421
Query: 215 QGQQTISEPSMDTQLDSRIHTE 280
+ + +S P+ + LD +I E
Sbjct: 422 ETSENVSTPT-EHLLDEQIVVE 442
>gb|EMS67284.1| Spastin [Triticum urartu]
Length = 1541
Score = 94.4 bits (233), Expect = 1e-17
Identities = 42/70 (60%), Positives = 56/70 (80%)
Frame = +2
Query: 2 GCDAYVKRSLSEKLAHKSDKCLFVGYPKETKGYYFYLPSENKVFVARNGIFLEREFISKR 181
GCDAYV++ +KL KS+KC+F+GYPKET GY FY S K+FVA+NG FLE+EF+SK+
Sbjct: 467 GCDAYVQKLQPDKLKPKSEKCVFIGYPKETIGYTFYHRSGGKIFVAKNGSFLEKEFLSKQ 526
Query: 182 VSGSRIHLEE 211
VSG ++ L+E
Sbjct: 527 VSGRKVELDE 536
>gb|AAP52343.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 655
Score = 94.4 bits (233), Expect = 1e-17
Identities = 45/68 (66%), Positives = 54/68 (79%), Gaps = 2/68 (2%)
Frame = +2
Query: 2 GCDAYVKRSLSEKLA--HKSDKCLFVGYPKETKGYYFYLPSENKVFVARNGIFLEREFIS 175
GC+ YVKR S+KL KSDKC FVGYPKETKGYYFY E KVFVAR+G+FLE++FIS
Sbjct: 215 GCEVYVKRLQSDKLTPKSKSDKCFFVGYPKETKGYYFYNREEGKVFVARHGVFLEKKFIS 274
Query: 176 KRVSGSRI 199
++ SGS +
Sbjct: 275 RKDSGSML 282
>gb|AAD17357.1| contains similarity to retrovirus-related polyproteins [Arabidopsis
thaliana] gi|7267382|emb|CAB77943.1| putative transposon
protein [Arabidopsis thaliana]
Length = 769
Score = 94.0 bits (232), Expect = 2e-17
Identities = 41/61 (67%), Positives = 49/61 (80%)
Frame = +2
Query: 2 GCDAYVKRSLSEKLAHKSDKCLFVGYPKETKGYYFYLPSENKVFVARNGIFLEREFISKR 181
GC+AYVKR +++KL KSDKC FVGYPKETKGYYFY P++NKVFVARNG F + F K
Sbjct: 342 GCEAYVKRLITDKLGPKSDKCYFVGYPKETKGYYFYHPTDNKVFVARNGAFWKESFFQKE 401
Query: 182 V 184
+
Sbjct: 402 L 402
>gb|EMT21951.1| ABC transporter C family member 10 [Aegilops tauschii]
Length = 2297
Score = 91.7 bits (226), Expect = 9e-17
Identities = 41/70 (58%), Positives = 55/70 (78%)
Frame = +2
Query: 2 GCDAYVKRSLSEKLAHKSDKCLFVGYPKETKGYYFYLPSENKVFVARNGIFLEREFISKR 181
GCDAYV++ +KL KS+K +F+GYPKET GY FY SE K+FVA+NG FL++EF+SK
Sbjct: 95 GCDAYVEKLQPDKLEPKSEKYVFIGYPKETVGYTFYHRSEGKIFVAKNGSFLQKEFLSKE 154
Query: 182 VSGSRIHLEE 211
VSG ++ L+E
Sbjct: 155 VSGRKVELDE 164
>gb|EMS50467.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Triticum
urartu]
Length = 1808
Score = 91.3 bits (225), Expect = 1e-16
Identities = 41/70 (58%), Positives = 53/70 (75%)
Frame = +2
Query: 2 GCDAYVKRSLSEKLAHKSDKCLFVGYPKETKGYYFYLPSENKVFVARNGIFLEREFISKR 181
GCDAYVK+ +KL S+KC+F+GYPKET GY FY SE +FVA+NG FLE+E +SK
Sbjct: 1258 GCDAYVKKLQPDKLEPTSEKCVFIGYPKETVGYTFYHRSEGNIFVAKNGSFLEKECLSKE 1317
Query: 182 VSGSRIHLEE 211
VSG ++ L+E
Sbjct: 1318 VSGRKVELDE 1327