BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Catharanthus22_contig00025556
         (709 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|BAA97287.1| retroelement pol polyprotein-like [Arabidopsis t...    59   1e-06
gb|AAC67205.1| putative retroelement pol polyprotein [Arabidopsi...    59   1e-06
gb|AAB87099.1| putative retroelement pol polyprotein [Arabidopsi...    58   3e-06
gb|AAG50751.1|AC079733_19 polyprotein, putative [Arabidopsis tha...    57   6e-06

>dbj|BAA97287.1| retroelement pol polyprotein-like [Arabidopsis thaliana]
          Length = 1491

 Score = 59.3 bits (142), Expect = 1e-06
 Identities = 31/62 (50%), Positives = 36/62 (58%)
 Frame = +2

Query: 68  LLCSHCNRPRHEIKNCFQFVGYPDWWPKXXXXXXXXXXXXPGRGGAQSG*GTNSGHSRGR 247
           +LCSHC R  HE K+C+Q VG+PDWW +             GRGG  SG   NSG  RGR
Sbjct: 278 VLCSHCGRSGHEKKDCWQIVGFPDWWTERTNGGGRGSSSR-GRGGRSSG-SNNSG--RGR 333

Query: 248 GQ 253
           GQ
Sbjct: 334 GQ 335


>gb|AAC67205.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1413

 Score = 59.3 bits (142), Expect = 1e-06
 Identities = 31/62 (50%), Positives = 36/62 (58%)
 Frame = +2

Query: 68  LLCSHCNRPRHEIKNCFQFVGYPDWWPKXXXXXXXXXXXXPGRGGAQSG*GTNSGHSRGR 247
           +LCSHC R  HE K+C+Q VG+PDWW +             GRGG  SG   NSG  RGR
Sbjct: 278 VLCSHCGRSGHEKKDCWQIVGFPDWWTERTNGGGRGSSSR-GRGGRSSG-SNNSG--RGR 333

Query: 248 GQ 253
           GQ
Sbjct: 334 GQ 335


>gb|AAB87099.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1496

 Score = 57.8 bits (138), Expect = 3e-06
 Identities = 27/74 (36%), Positives = 35/74 (47%)
 Frame = +2

Query: 68  LLCSHCNRPRHEIKNCFQFVGYPDWWPKXXXXXXXXXXXXPGRGGAQSG*GTNSGHSRGR 247
           L C+HCNR  HE+  CF   GYPDWW +              RG   +G G++SG    R
Sbjct: 258 LFCTHCNRKGHEVTQCFLVHGYPDWWLEQNPQENQPST----RGRGSNGRGSSSGRGGNR 313

Query: 248 GQSPGLRGNQHGNS 289
             +P  RG    N+
Sbjct: 314 SSAPTTRGRGRANN 327


>gb|AAG50751.1|AC079733_19 polyprotein, putative [Arabidopsis thaliana]
          Length = 1468

 Score = 57.0 bits (136), Expect = 6e-06
 Identities = 33/84 (39%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
 Frame = +2

Query: 29  FASKKPLQNYGPRLLCSHCNRPRHEIKNCFQFVGYPDWWPKXXXXXXXXXXXXPGRGGAQ 208
           FA+ + LQN   + LC+HCNR  H  +NCF  +GYP+WW                RG + 
Sbjct: 262 FANSEKLQN---KKLCTHCNRGGHSPENCFVLIGYPEWWGDRP------------RGKSN 306

Query: 209 SG*GTNSGHSRGRGQ-SPGLRGNQ 277
           S    N   SRGRG+  PG  G Q
Sbjct: 307 S----NGSTSRGRGRFGPGFNGGQ 326