BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Catharanthus22_contig00025445
         (526 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004251424.1| PREDICTED: pentatricopeptide repeat-containi...   257   1e-66
ref|XP_006340426.1| PREDICTED: pentatricopeptide repeat-containi...   254   1e-65
ref|XP_002274209.2| PREDICTED: pentatricopeptide repeat-containi...   251   7e-65
ref|XP_002523876.1| pentatricopeptide repeat-containing protein,...   246   2e-63
gb|EXC37761.1| hypothetical protein L484_001219 [Morus notabilis]     246   2e-63
ref|XP_004293118.1| PREDICTED: pentatricopeptide repeat-containi...   246   3e-63
gb|EOY33313.1| Tetratricopeptide repeat (TPR)-like superfamily p...   243   1e-62
ref|XP_002299777.1| pentatricopeptide repeat-containing family p...   242   3e-62
ref|XP_006481538.1| PREDICTED: pentatricopeptide repeat-containi...   242   4e-62
ref|XP_003541961.1| PREDICTED: pentatricopeptide repeat-containi...   239   3e-61
ref|XP_006424118.1| hypothetical protein CICLE_v10028449mg [Citr...   239   4e-61
ref|XP_006417992.1| hypothetical protein EUTSA_v10009524mg [Eutr...   236   2e-60
gb|AEP33748.1| chloroplast biogenesis 19, partial [Capsella burs...   234   9e-60
ref|XP_006303598.1| hypothetical protein CARUB_v10011161mg [Caps...   233   2e-59
gb|AEP33751.1| chloroplast biogenesis 19, partial [Lepidium virg...   233   2e-59
gb|AEP33754.1| chloroplast biogenesis 19, partial [Nasturtium of...   233   3e-59
ref|NP_172066.3| pentatricopeptide repeat protein PDE247 [Arabid...   232   4e-59
gb|AEP33746.1| chloroplast biogenesis 19, partial [Barbarea verna]    232   4e-59
gb|AEP33747.1| chloroplast biogenesis 19, partial [Brassica oler...   231   8e-59
ref|XP_002889563.1| PDE247 [Arabidopsis lyrata subsp. lyrata] gi...   231   8e-59

>ref|XP_004251424.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05750,
           chloroplastic-like [Solanum lycopersicum]
          Length = 507

 Score =  257 bits (656), Expect = 1e-66
 Identities = 122/175 (69%), Positives = 146/175 (83%)
 Frame = -1

Query: 526 ERDVVSWTALIGGFVKKKRFEEALEWFQYMQLSVVQPDSVTMVSVLSAVANLGFLGLGLW 347
           +RDV+SWTAL+GGFVK   FEE L WF+ MQLS V+PD VTM+SVLSA ANLG LG+ LW
Sbjct: 176 DRDVISWTALVGGFVKNGLFEEGLVWFREMQLSGVEPDYVTMISVLSACANLGTLGISLW 235

Query: 346 LHRYMLAHDFRNNTRVNNSLIDMYCRCGSVDLARQVFKIMSRRSLVSWNSIIVGLAMNGY 167
           LHR++L  +F++N RVNNSLIDMYCRCG V+LA QVF  M+ RSLVSWNSIIVGLA+NG+
Sbjct: 236 LHRFILRREFKDNVRVNNSLIDMYCRCGCVELACQVFHRMTGRSLVSWNSIIVGLAVNGH 295

Query: 166 AEECLDYFNLMQKDGFEPDGVTFTGALTACSHAGLVNEGLRLFKVMMEVHKISPR 2
           A + L YF+LMQ +GF+PDGVTFTG LTACSHAGLV +GL+ FK M  VH+I+PR
Sbjct: 296 AIDALQYFDLMQNEGFQPDGVTFTGVLTACSHAGLVEKGLKYFKAMKRVHRITPR 350



 Score = 83.6 bits (205), Expect = 3e-14
 Identities = 63/197 (31%), Positives = 92/197 (46%), Gaps = 35/197 (17%)
 Frame = -1

Query: 511 SWTALIGGFVKKKRFEEALEWFQYMQLSVVQPDSVTMVSVLSAVANLG--FLGLGLWLHR 338
           SWT+LI    K  R  EA+  F  M+ S V+P+ +T V++LS  A+     L  G  LH 
Sbjct: 46  SWTSLIARHCKNGRLIEAVAEFTRMRNSGVEPNHITFVTLLSCCAHFPDQALSFGSALHG 105

Query: 337 YM--LAHDFRNNTRVNNSLIDMYCRCGSVDLAR--------------------------- 245
           Y   L  D +N  +V  ++IDMY + G V LAR                           
Sbjct: 106 YARKLGLDTQN-VKVGTAVIDMYSKFGLVGLARLSFDHMGAKNKVTWNTMVDGYMRNGDF 164

Query: 244 ----QVFKIMSRRSLVSWNSIIVGLAMNGYAEECLDYFNLMQKDGFEPDGVTFTGALTAC 77
               +VF  +  R ++SW +++ G   NG  EE L +F  MQ  G EPD VT    L+AC
Sbjct: 165 KNAVKVFDEIPDRDVISWTALVGGFVKNGLFEEGLVWFREMQLSGVEPDYVTMISVLSAC 224

Query: 76  SHAGLVNEGLRLFKVMM 26
           ++ G +   L L + ++
Sbjct: 225 ANLGTLGISLWLHRFIL 241


>ref|XP_006340426.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05750,
           chloroplastic-like [Solanum tuberosum]
          Length = 509

 Score =  254 bits (648), Expect = 1e-65
 Identities = 121/175 (69%), Positives = 143/175 (81%)
 Frame = -1

Query: 526 ERDVVSWTALIGGFVKKKRFEEALEWFQYMQLSVVQPDSVTMVSVLSAVANLGFLGLGLW 347
           ERDV+SWTAL+GGFVK   FEE L WF+ MQLS V+PD VTM+SVLSA ANLG LG+ LW
Sbjct: 178 ERDVISWTALVGGFVKNGLFEEGLVWFREMQLSEVEPDYVTMISVLSACANLGTLGISLW 237

Query: 346 LHRYMLAHDFRNNTRVNNSLIDMYCRCGSVDLARQVFKIMSRRSLVSWNSIIVGLAMNGY 167
           LHR++L  +F++N RVNNSLIDMYCRCG ++LA QVF  M+ RSLVSWNSIIVGLA+NG+
Sbjct: 238 LHRFILRREFKDNVRVNNSLIDMYCRCGCIELACQVFDRMTERSLVSWNSIIVGLAVNGH 297

Query: 166 AEECLDYFNLMQKDGFEPDGVTFTGALTACSHAGLVNEGLRLFKVMMEVHKISPR 2
           A + L YF LMQ +GF PD VTFTG LTACSHAGLV +GL+ FK M  VH+I+PR
Sbjct: 298 AVDALQYFELMQNEGFLPDAVTFTGVLTACSHAGLVEKGLKYFKSMKRVHRITPR 352



 Score = 84.0 bits (206), Expect = 2e-14
 Identities = 63/197 (31%), Positives = 93/197 (47%), Gaps = 35/197 (17%)
 Frame = -1

Query: 511 SWTALIGGFVKKKRFEEALEWFQYMQLSVVQPDSVTMVSVLSAVANLGF--LGLGLWLHR 338
           SWT+LI    K  R  EA+  F  M+ S V+P+ +T V++LS  A+     L LG  LH 
Sbjct: 48  SWTSLIARHCKNGRLIEAVSEFTRMRNSGVEPNHITFVTLLSGCAHFPAQALSLGSALHG 107

Query: 337 YM--LAHDFRNNTRVNNSLIDMYCRCGSVDLAR--------------------------- 245
           Y   L  D +N  +V  ++IDMY + G V LAR                           
Sbjct: 108 YARKLGLDTQN-VKVGTAVIDMYSKFGLVGLARLSFDHMGVKNKVTWNTMVDGYMRNGDF 166

Query: 244 ----QVFKIMSRRSLVSWNSIIVGLAMNGYAEECLDYFNLMQKDGFEPDGVTFTGALTAC 77
               +VF  ++ R ++SW +++ G   NG  EE L +F  MQ    EPD VT    L+AC
Sbjct: 167 KNAVKVFDEITERDVISWTALVGGFVKNGLFEEGLVWFREMQLSEVEPDYVTMISVLSAC 226

Query: 76  SHAGLVNEGLRLFKVMM 26
           ++ G +   L L + ++
Sbjct: 227 ANLGTLGISLWLHRFIL 243


>ref|XP_002274209.2| PREDICTED: pentatricopeptide repeat-containing protein At1g05750,
           chloroplastic-like [Vitis vinifera]
          Length = 518

 Score =  251 bits (641), Expect = 7e-65
 Identities = 115/175 (65%), Positives = 150/175 (85%)
 Frame = -1

Query: 526 ERDVVSWTALIGGFVKKKRFEEALEWFQYMQLSVVQPDSVTMVSVLSAVANLGFLGLGLW 347
           ERD +SWT++IGGFVKK  FE+ALEWF+ MQL+ V+PD VT++SVL+A ANLG LGLGLW
Sbjct: 186 ERDAISWTSMIGGFVKKGCFEQALEWFREMQLAGVEPDYVTIISVLAACANLGALGLGLW 245

Query: 346 LHRYMLAHDFRNNTRVNNSLIDMYCRCGSVDLARQVFKIMSRRSLVSWNSIIVGLAMNGY 167
           ++R+++  DF++N +++NSLIDMY RCG + LARQVF+ M +RSLVSWNS+IVG A+NG+
Sbjct: 246 INRFVMKQDFKDNIKISNSLIDMYSRCGCIRLARQVFEQMPKRSLVSWNSMIVGFALNGH 305

Query: 166 AEECLDYFNLMQKDGFEPDGVTFTGALTACSHAGLVNEGLRLFKVMMEVHKISPR 2
           AEE L++FNLM+K+GF PDGV+FTGALTACSH+GLV+EGL+ F +M    KISPR
Sbjct: 306 AEEALEFFNLMRKEGFRPDGVSFTGALTACSHSGLVDEGLQFFDIMKRTRKISPR 360



 Score = 89.7 bits (221), Expect = 4e-16
 Identities = 63/200 (31%), Positives = 96/200 (48%), Gaps = 35/200 (17%)
 Frame = -1

Query: 517 VVSWTALIGGFVKKKRFEEALEWFQYMQLSVVQPDSVTMVSVLSAVANLGFLGL--GLWL 344
           +VSWT+ I    +  +  EA   F  MQ++ V+P+ +T +++LSA  +    GL  G  +
Sbjct: 54  IVSWTSSIALHCRNGQLPEAAAEFSRMQIAGVRPNHITFLTLLSACTDFPLEGLRFGGSI 113

Query: 343 HRYM--LAHDFRNNTRVNNSLIDMYCRCGSVDLARQVFKIMSRRSLVSWNSIIVGLAMNG 170
           H Y+  L  D   N  V  +L+DMY +CG +DLA  +F  M  R+ VSWN++I G   NG
Sbjct: 114 HAYVRKLGLD-TENVMVGTALVDMYSKCGQLDLAWLMFDEMHVRNSVSWNTMIDGCMRNG 172

Query: 169 YA-------------------------------EECLDYFNLMQKDGFEPDGVTFTGALT 83
                                            E+ L++F  MQ  G EPD VT    L 
Sbjct: 173 EVGEAIVLFDQMSERDAISWTSMIGGFVKKGCFEQALEWFREMQLAGVEPDYVTIISVLA 232

Query: 82  ACSHAGLVNEGLRLFKVMME 23
           AC++ G +  GL + + +M+
Sbjct: 233 ACANLGALGLGLWINRFVMK 252


>ref|XP_002523876.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223536964|gb|EEF38602.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 384

 Score =  246 bits (629), Expect = 2e-63
 Identities = 113/166 (68%), Positives = 140/166 (84%)
 Frame = -1

Query: 526 ERDVVSWTALIGGFVKKKRFEEALEWFQYMQLSVVQPDSVTMVSVLSAVANLGFLGLGLW 347
           E+D +SWT  I GF+KK  FE+ALEWF+ MQ+S V+PD VT+++VLSA ANLG LGLGLW
Sbjct: 191 EKDAISWTVFIDGFIKKGHFEQALEWFREMQVSKVEPDYVTIIAVLSACANLGALGLGLW 250

Query: 346 LHRYMLAHDFRNNTRVNNSLIDMYCRCGSVDLARQVFKIMSRRSLVSWNSIIVGLAMNGY 167
           +HRY+L  +FRNN R+ NSLIDMY RCG ++LARQVF  M +R+LVSWNSIIVG A NG+
Sbjct: 251 IHRYVLEKEFRNNVRIGNSLIDMYSRCGCIELARQVFHKMLKRTLVSWNSIIVGFAANGF 310

Query: 166 AEECLDYFNLMQKDGFEPDGVTFTGALTACSHAGLVNEGLRLFKVM 29
           AEE L+YF LMQK+GF+PDGV+FTGALTACSHAG+V+EGL+ F +M
Sbjct: 311 AEEALEYFGLMQKEGFKPDGVSFTGALTACSHAGMVDEGLKCFDIM 356



 Score = 88.2 bits (217), Expect = 1e-15
 Identities = 56/198 (28%), Positives = 93/198 (46%), Gaps = 34/198 (17%)
 Frame = -1

Query: 514 VSWTALIGGFVKKKRFEEALEWFQYMQLSVVQPDSVTMVSVLSAVANLGFLG--LGLWLH 341
           ++WT+ I       +  EA   F  M+L+ V+P+ +T  +++S  A+  F G  +G  +H
Sbjct: 60  IAWTSSISRHCCNGQLPEAASLFTQMRLAAVEPNHITFATLISFCADFPFQGKSIGPSIH 119

Query: 340 RYMLAHDFRN-NTRVNNSLIDMYCRCGSVDLARQVFKIMSRRSLVSWNSIIVGLAMN--- 173
            Y+        N  V  +L+DMY +CG V LAR +F  +  ++ VSWN++I G   N   
Sbjct: 120 AYVRKLGLDTCNVMVGTALVDMYAKCGKVQLARLIFDDLKVKNSVSWNTMIDGYMRNGET 179

Query: 172 ----------------------------GYAEECLDYFNLMQKDGFEPDGVTFTGALTAC 77
                                       G+ E+ L++F  MQ    EPD VT    L+AC
Sbjct: 180 GSAMELFDEMPEKDAISWTVFIDGFIKKGHFEQALEWFREMQVSKVEPDYVTIIAVLSAC 239

Query: 76  SHAGLVNEGLRLFKVMME 23
           ++ G +  GL + + ++E
Sbjct: 240 ANLGALGLGLWIHRYVLE 257


>gb|EXC37761.1| hypothetical protein L484_001219 [Morus notabilis]
          Length = 508

 Score =  246 bits (628), Expect = 2e-63
 Identities = 115/175 (65%), Positives = 148/175 (84%)
 Frame = -1

Query: 526 ERDVVSWTALIGGFVKKKRFEEALEWFQYMQLSVVQPDSVTMVSVLSAVANLGFLGLGLW 347
           ERD VSWTALIGGFVK++RFEEALEWF+ MQ+S V+PD VT+++VL+A A+LG +GLGLW
Sbjct: 179 ERDAVSWTALIGGFVKRRRFEEALEWFREMQVSSVEPDYVTVIAVLAACADLGTVGLGLW 238

Query: 346 LHRYMLAHDFRNNTRVNNSLIDMYCRCGSVDLARQVFKIMSRRSLVSWNSIIVGLAMNGY 167
           ++R+++   F++N +++NSLIDMY RCG ++ ARQVF+ M  R+LVSWNSIIVG A+NG+
Sbjct: 239 MNRFIMNRKFKDNVKISNSLIDMYSRCGCIEFARQVFERMPNRTLVSWNSIIVGFAVNGH 298

Query: 166 AEECLDYFNLMQKDGFEPDGVTFTGALTACSHAGLVNEGLRLFKVMMEVHKISPR 2
           AEE L +FNLMQ++GF+PDGV+FTGALTACSHAGLV EGL LF+ M  VH I  R
Sbjct: 299 AEEALKFFNLMQREGFKPDGVSFTGALTACSHAGLVEEGLLLFENMKRVHGIRHR 353



 Score = 91.3 bits (225), Expect = 1e-16
 Identities = 65/196 (33%), Positives = 90/196 (45%), Gaps = 32/196 (16%)
 Frame = -1

Query: 517 VVSWTALIGGFVKKKRFEEALEWFQYMQLSVVQPDSVTMVSVLSAVANLGFLGLGLWLHR 338
           VV WT+ I    K  RF EA   F  M+LS V+P+ VT V++LS  A+   +  G  +H 
Sbjct: 50  VVKWTSSIARHCKNGRFSEAAAEFSRMRLSGVEPNHVTFVTLLSGCADSN-ISFGASIHG 108

Query: 337 YMLAHDF-RNNTRVNNSLIDMYCRCGSVDLARQVFKIMSRRSLVSWNSIIVGLAMNGYA- 164
           Y     F  +N  V  +L+ MY + G VD+AR VF  +  ++ VSWN++I G   NG   
Sbjct: 109 YARKLCFDTSNVMVGTALVAMYAKRGLVDVARLVFDDIKEKNSVSWNTMIDGYMRNGKVR 168

Query: 163 ------------------------------EECLDYFNLMQKDGFEPDGVTFTGALTACS 74
                                         EE L++F  MQ    EPD VT    L AC+
Sbjct: 169 DAVEVFDEMPERDAVSWTALIGGFVKRRRFEEALEWFREMQVSSVEPDYVTVIAVLAACA 228

Query: 73  HAGLVNEGLRLFKVMM 26
             G V  GL + + +M
Sbjct: 229 DLGTVGLGLWMNRFIM 244


>ref|XP_004293118.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05750,
           chloroplastic-like [Fragaria vesca subsp. vesca]
          Length = 504

 Score =  246 bits (627), Expect = 3e-63
 Identities = 113/175 (64%), Positives = 147/175 (84%)
 Frame = -1

Query: 526 ERDVVSWTALIGGFVKKKRFEEALEWFQYMQLSVVQPDSVTMVSVLSAVANLGFLGLGLW 347
           +RD VSWT LIGGFVKK+R+E+ALEWF+ MQ+S V+PD VT+++V++A A+LG LGLGLW
Sbjct: 177 KRDAVSWTTLIGGFVKKRRYEDALEWFREMQVSGVEPDYVTIIAVIAACADLGTLGLGLW 236

Query: 346 LHRYMLAHDFRNNTRVNNSLIDMYCRCGSVDLARQVFKIMSRRSLVSWNSIIVGLAMNGY 167
           ++R++    FR+N R++NSLIDMY RCG +D ARQVF  M  R+LVSWNS+IVG A+NG+
Sbjct: 237 VNRFVTKQHFRHNIRISNSLIDMYSRCGCIDFARQVFGNMPNRTLVSWNSMIVGFAVNGH 296

Query: 166 AEECLDYFNLMQKDGFEPDGVTFTGALTACSHAGLVNEGLRLFKVMMEVHKISPR 2
           AEE L++F+ MQK+GF+PDGV+FTGALTACSHAGLV+EGL  F  M  +HKI+PR
Sbjct: 297 AEEALEFFHQMQKEGFKPDGVSFTGALTACSHAGLVDEGLHFFDKMKRIHKITPR 351



 Score = 78.2 bits (191), Expect = 1e-12
 Identities = 57/201 (28%), Positives = 88/201 (43%), Gaps = 35/201 (17%)
 Frame = -1

Query: 514 VSWTALIGGFVKKKRFEEALEWFQYMQLSVVQPDSVTMVSVLSAVANL----GFLGLGLW 347
           V WT+ I    +  +  +A+  F  M+ + V+P+ +T V++LS  A+      F G  L 
Sbjct: 46  VLWTSSISQRCRNGQLAQAVSQFIQMRRARVEPNHITFVTLLSGCAHFPAKAAFFGPSLH 105

Query: 346 LHRYMLAHDFRNNTRVNNSLIDMYCRCGSVDLAR-------------------------- 245
            +   L  D R N  V  +LIDMY + G V+ AR                          
Sbjct: 106 AYVCKLGLD-RTNVIVGTALIDMYAKSGRVEFARLAFGGMEVKNSMSWNTLIDGYMKMGN 164

Query: 244 -----QVFKIMSRRSLVSWNSIIVGLAMNGYAEECLDYFNLMQKDGFEPDGVTFTGALTA 80
                +VF  M +R  VSW ++I G       E+ L++F  MQ  G EPD VT    + A
Sbjct: 165 VRDAVEVFDEMPKRDAVSWTTLIGGFVKKRRYEDALEWFREMQVSGVEPDYVTIIAVIAA 224

Query: 79  CSHAGLVNEGLRLFKVMMEVH 17
           C+  G +  GL + + + + H
Sbjct: 225 CADLGTLGLGLWVNRFVTKQH 245


>gb|EOY33313.1| Tetratricopeptide repeat (TPR)-like superfamily protein [Theobroma
           cacao]
          Length = 509

 Score =  243 bits (621), Expect = 1e-62
 Identities = 113/175 (64%), Positives = 145/175 (82%)
 Frame = -1

Query: 526 ERDVVSWTALIGGFVKKKRFEEALEWFQYMQLSVVQPDSVTMVSVLSAVANLGFLGLGLW 347
           +RDV+SWTALI GF ++   EEAL+WF+ M +  V+PD V +++VL+A ANLG LG+GLW
Sbjct: 177 QRDVISWTALINGFARRGFHEEALDWFREMMIFGVKPDYVVIIAVLTACANLGALGVGLW 236

Query: 346 LHRYMLAHDFRNNTRVNNSLIDMYCRCGSVDLARQVFKIMSRRSLVSWNSIIVGLAMNGY 167
           +HR++L   FR+N RVNNSLIDMY RCG ++LAR+VF  M +R+LVSWNSIIVG A+NG+
Sbjct: 237 IHRFVLKQSFRDNVRVNNSLIDMYSRCGCIELAREVFDKMQKRTLVSWNSIIVGFAVNGF 296

Query: 166 AEECLDYFNLMQKDGFEPDGVTFTGALTACSHAGLVNEGLRLFKVMMEVHKISPR 2
           AEE L YF+ MQK+GF+PDGV+FTGALTACSHAGLV+EGLR F +M  V++ISPR
Sbjct: 297 AEEALKYFDSMQKEGFKPDGVSFTGALTACSHAGLVDEGLRYFGIMKRVYRISPR 351



 Score = 96.3 bits (238), Expect = 4e-18
 Identities = 60/199 (30%), Positives = 97/199 (48%), Gaps = 34/199 (17%)
 Frame = -1

Query: 517 VVSWTALIGGFVKKKRFEEALEWFQYMQLSVVQPDSVTMVSVLSAVANLGFLG--LGLWL 344
           +VSWT+ I    +  +  EA   F  M+LS V+P+ +T V++LS  A+       LG+ +
Sbjct: 45  IVSWTSSISRHCRAGQISEAASEFTRMRLSEVEPNHITFVTLLSGCADFPLKSGVLGVLI 104

Query: 343 HRYMLAHDF-RNNTRVNNSLIDMYCRCGSVDLARQVFKIMSRRSLVSWN----------- 200
           H Y+      + N  V  +L++MY +CG V +A+ VF +M  ++LVSWN           
Sbjct: 105 HGYVCKLGLDKENVMVGTALVEMYAKCGHVKVAKLVFDVMRVKNLVSWNTMVDGYMRNGE 164

Query: 199 --------------------SIIVGLAMNGYAEECLDYFNLMQKDGFEPDGVTFTGALTA 80
                               ++I G A  G+ EE LD+F  M   G +PD V     LTA
Sbjct: 165 YEKAVEIFDEMPQRDVISWTALINGFARRGFHEEALDWFREMMIFGVKPDYVVIIAVLTA 224

Query: 79  CSHAGLVNEGLRLFKVMME 23
           C++ G +  GL + + +++
Sbjct: 225 CANLGALGVGLWIHRFVLK 243


>ref|XP_002299777.1| pentatricopeptide repeat-containing family protein [Populus
           trichocarpa] gi|222847035|gb|EEE84582.1|
           pentatricopeptide repeat-containing family protein
           [Populus trichocarpa]
          Length = 439

 Score =  242 bits (618), Expect = 3e-62
 Identities = 116/175 (66%), Positives = 142/175 (81%)
 Frame = -1

Query: 526 ERDVVSWTALIGGFVKKKRFEEALEWFQYMQLSVVQPDSVTMVSVLSAVANLGFLGLGLW 347
           ER V+SWT LI GFVK   FEEALEWF+ MQ+S V+PD VT+V+VLSA ANLG LGLGLW
Sbjct: 107 ERGVISWTVLINGFVKMGLFEEALEWFRKMQVSKVEPDRVTIVTVLSACANLGALGLGLW 166

Query: 346 LHRYMLAHDFRNNTRVNNSLIDMYCRCGSVDLARQVFKIMSRRSLVSWNSIIVGLAMNGY 167
           +HRY L    R+N ++ NSLID+Y RCG+++LARQVF+ M  R+LVSWNSII GLA NG+
Sbjct: 167 VHRYALKKGLRDNVKICNSLIDLYSRCGAIELARQVFEKMGERTLVSWNSIIGGLAANGF 226

Query: 166 AEECLDYFNLMQKDGFEPDGVTFTGALTACSHAGLVNEGLRLFKVMMEVHKISPR 2
            EE L++F+LMQK GF+P+ V+FTGALTACSH GLV+EGL+ F +M  VHKISPR
Sbjct: 227 TEEALEHFDLMQKQGFKPNDVSFTGALTACSHTGLVDEGLKYFDIMERVHKISPR 281



 Score = 75.1 bits (183), Expect = 9e-12
 Identities = 52/165 (31%), Positives = 74/165 (44%), Gaps = 34/165 (20%)
 Frame = -1

Query: 439 MQLSVVQPDSVTMVSVLSAVANLGFLG--LGLWLHRYMLAHDFRN-NTRVNNSLIDMYCR 269
           M+L  + P+ VT +++LS  A+L   G  LG  LH Y         N  V  +L+DMY +
Sbjct: 1   MRLLEIDPNHVTFITLLSGCADLPSQGNSLGPLLHAYTRKLGLDTCNLMVGTALVDMYAK 60

Query: 268 CGSVDLAR-------------------------------QVFKIMSRRSLVSWNSIIVGL 182
           CG V+L+R                               +VF  M  R ++SW  +I G 
Sbjct: 61  CGHVELSRLCFDELKVKNSFSWNTMIDGFVRNGKIREAIEVFDEMPERGVISWTVLINGF 120

Query: 181 AMNGYAEECLDYFNLMQKDGFEPDGVTFTGALTACSHAGLVNEGL 47
              G  EE L++F  MQ    EPD VT    L+AC++ G +  GL
Sbjct: 121 VKMGLFEEALEWFRKMQVSKVEPDRVTIVTVLSACANLGALGLGL 165


>ref|XP_006481538.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05750,
           chloroplastic-like [Citrus sinensis]
          Length = 509

 Score =  242 bits (617), Expect = 4e-62
 Identities = 109/174 (62%), Positives = 146/174 (83%)
 Frame = -1

Query: 523 RDVVSWTALIGGFVKKKRFEEALEWFQYMQLSVVQPDSVTMVSVLSAVANLGFLGLGLWL 344
           RD +SWTAL+ GFVK+  FEEALE F+ MQ+S V+PD VT++SVL+A AN+G LG+GLW+
Sbjct: 178 RDAISWTALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNACANVGTLGIGLWI 237

Query: 343 HRYMLAHDFRNNTRVNNSLIDMYCRCGSVDLARQVFKIMSRRSLVSWNSIIVGLAMNGYA 164
           HRY+L  DF++N +V N+LID+Y RCG ++ ARQVF+ M +R+LVSWNSIIVG A+NG+ 
Sbjct: 238 HRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFV 297

Query: 163 EECLDYFNLMQKDGFEPDGVTFTGALTACSHAGLVNEGLRLFKVMMEVHKISPR 2
            E L+YFN MQK+GF+PDGV+FTGALTACSHAGL+ +GLR F +M +++++SPR
Sbjct: 298 GEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPR 351



 Score = 82.8 bits (203), Expect = 4e-14
 Identities = 58/198 (29%), Positives = 86/198 (43%), Gaps = 34/198 (17%)
 Frame = -1

Query: 514 VSWTALIGGFVKKKRFEEALEWFQYMQLSVVQPDSVTMVSVLSAVANLGF--LGLGLWLH 341
           V WT+ I    +  R  EA   F  M L    P+ +T +++LS  A+     L LG  +H
Sbjct: 46  VQWTSSISRHCRSGRIAEAALEFTRMTLHGTNPNHITFITLLSGCADFPSQCLFLGAMIH 105

Query: 340 RYMLAHDF-RNNTRVNNSLIDMYCRCGSVDLARQVFKIMSRRS----------------- 215
             +      RNN  V  +L+DMY + G +DLA  VF  M  +S                 
Sbjct: 106 GLVCKLGLDRNNVMVGTALLDMYAKFGRMDLATVVFDAMRVKSSFTWNAMIDGYMRRGDI 165

Query: 214 --------------LVSWNSIIVGLAMNGYAEECLDYFNLMQKDGFEPDGVTFTGALTAC 77
                          +SW +++ G    GY EE L+ F  MQ  G EPD VT    L AC
Sbjct: 166 ESAVRMFDEMPVRDAISWTALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNAC 225

Query: 76  SHAGLVNEGLRLFKVMME 23
           ++ G +  GL + + +++
Sbjct: 226 ANVGTLGIGLWIHRYVLK 243


>ref|XP_003541961.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05750,
           chloroplastic-like [Glycine max]
          Length = 521

 Score =  239 bits (610), Expect = 3e-61
 Identities = 114/174 (65%), Positives = 142/174 (81%)
 Frame = -1

Query: 523 RDVVSWTALIGGFVKKKRFEEALEWFQYMQLSVVQPDSVTMVSVLSAVANLGFLGLGLWL 344
           ++ +SWTALIGGFVKK   EEALE F+ MQLS V PD VT+++V++A ANLG LGLGLW+
Sbjct: 190 KNAISWTALIGGFVKKDYHEEALECFREMQLSGVAPDYVTVIAVIAACANLGTLGLGLWV 249

Query: 343 HRYMLAHDFRNNTRVNNSLIDMYCRCGSVDLARQVFKIMSRRSLVSWNSIIVGLAMNGYA 164
           HR ++  DFRNN +V+NSLIDMY RCG +DLARQVF  M +R+LVSWNSIIVG A+NG A
Sbjct: 250 HRLVMTQDFRNNVKVSNSLIDMYSRCGCIDLARQVFDRMPQRTLVSWNSIIVGFAVNGLA 309

Query: 163 EECLDYFNLMQKDGFEPDGVTFTGALTACSHAGLVNEGLRLFKVMMEVHKISPR 2
           +E L YFN MQ++GF+PDGV++TGAL ACSHAGL+ EGLR+F+ M  V +I PR
Sbjct: 310 DEALSYFNSMQEEGFKPDGVSYTGALMACSHAGLIGEGLRIFEHMKRVRRILPR 363



 Score = 91.7 bits (226), Expect = 9e-17
 Identities = 61/200 (30%), Positives = 94/200 (47%), Gaps = 36/200 (18%)
 Frame = -1

Query: 517 VVSWTALIGGFVKKKRFEEALEWFQYMQLSVVQPDSVTMVSVLSAVANL---GFLGLGLW 347
           +VSWT  I  + K     +A   F  M+ + ++P+ +T +++LSA A+      +  G  
Sbjct: 56  IVSWTTSIADYCKSGHLVKAASKFVQMREAAIEPNHITFITLLSACAHYPSRSSISFGTA 115

Query: 346 LHRYM--LAHDFRNNTRVNNSLIDMYCRCGSVDLARQVFKIMSRRSLVSWNSIIVGLAMN 173
           +H ++  L  D  N+  V  +LIDMY +CG V+ AR  F  M  R+LVSWN++I G   N
Sbjct: 116 IHAHVRKLGLDI-NDVMVGTALIDMYAKCGRVESARLAFDQMGVRNLVSWNTMIDGYMRN 174

Query: 172 G-------------------------------YAEECLDYFNLMQKDGFEPDGVTFTGAL 86
           G                               Y EE L+ F  MQ  G  PD VT    +
Sbjct: 175 GKFEDALQVFDGLPVKNAISWTALIGGFVKKDYHEEALECFREMQLSGVAPDYVTVIAVI 234

Query: 85  TACSHAGLVNEGLRLFKVMM 26
            AC++ G +  GL + +++M
Sbjct: 235 AACANLGTLGLGLWVHRLVM 254



 Score = 55.8 bits (133), Expect = 6e-06
 Identities = 42/145 (28%), Positives = 68/145 (46%), Gaps = 10/145 (6%)
 Frame = -1

Query: 526 ERDVVSWTALIGGFVKKKRFEEALEWFQYMQLSVVQPDSVTMVSVLSAVANLGFLGLGLW 347
           +R +VSW ++I GF      +EAL +F  MQ    +PD V+    L A ++ G +G GL 
Sbjct: 290 QRTLVSWNSIIVGFAVNGLADEALSYFNSMQEEGFKPDGVSYTGALMACSHAGLIGEGLR 349

Query: 346 LHRYMLAHDFRNNTRVNN--SLIDMYCRCGSVDLARQVFKIMSRRSLVSWNSIIVGLAMN 173
           +  +M     R   R+ +   L+D+Y R G ++ A  V K M  +     N +I+G  + 
Sbjct: 350 IFEHM-KRVRRILPRIEHYGCLVDLYSRAGRLEEALNVLKNMPMKP----NEVILGSLLA 404

Query: 172 --------GYAEECLDYFNLMQKDG 122
                   G AE  ++Y   +   G
Sbjct: 405 ACRTQGNIGLAENVMNYLIELDSGG 429


>ref|XP_006424118.1| hypothetical protein CICLE_v10028449mg [Citrus clementina]
           gi|557526052|gb|ESR37358.1| hypothetical protein
           CICLE_v10028449mg [Citrus clementina]
          Length = 445

 Score =  239 bits (609), Expect = 4e-61
 Identities = 107/174 (61%), Positives = 145/174 (83%)
 Frame = -1

Query: 523 RDVVSWTALIGGFVKKKRFEEALEWFQYMQLSVVQPDSVTMVSVLSAVANLGFLGLGLWL 344
           R+ +SWTAL+ GF K+  FEEALE F+ MQ+S V+PD VT++SVL+A AN+G LG+GLW+
Sbjct: 108 RNAISWTALLNGFAKRGYFEEALECFREMQISGVEPDYVTIISVLNACANVGMLGIGLWI 167

Query: 343 HRYMLAHDFRNNTRVNNSLIDMYCRCGSVDLARQVFKIMSRRSLVSWNSIIVGLAMNGYA 164
           HR++L  DF++N RV N+LID+Y RCG ++ ARQVF+ M +R+LVSWNSIIVG A+NG+ 
Sbjct: 168 HRFVLKQDFKDNVRVCNTLIDLYSRCGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFV 227

Query: 163 EECLDYFNLMQKDGFEPDGVTFTGALTACSHAGLVNEGLRLFKVMMEVHKISPR 2
            E L+YFN MQK+GF+PDGV+FTGALTACSHAGL+ +GLR F +M +++++SPR
Sbjct: 228 GEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPR 281



 Score = 74.7 bits (182), Expect = 1e-11
 Identities = 51/173 (29%), Positives = 78/173 (45%), Gaps = 34/173 (19%)
 Frame = -1

Query: 439 MQLSVVQPDSVTMVSVLSAVANLGF--LGLGLWLHRYMLAHDF-RNNTRVNNSLIDMYCR 269
           M L    P+ +T +++LS  A+     L LG  +H  +      RNN  V  +L+DMY +
Sbjct: 1   MTLHGTNPNHITFITLLSGCADFPSQCLFLGAMIHGLVCKLGLDRNNVMVGTALLDMYAK 60

Query: 268 CGSVDLARQVFKIMSRRS-------------------------------LVSWNSIIVGL 182
            G +DLA  VF  M  +S                                +SW +++ G 
Sbjct: 61  FGRMDLATVVFDAMRVKSSFTWNAMIDGYMRNGDIESAVKMFDEMPVRNAISWTALLNGF 120

Query: 181 AMNGYAEECLDYFNLMQKDGFEPDGVTFTGALTACSHAGLVNEGLRLFKVMME 23
           A  GY EE L+ F  MQ  G EPD VT    L AC++ G++  GL + + +++
Sbjct: 121 AKRGYFEEALECFREMQISGVEPDYVTIISVLNACANVGMLGIGLWIHRFVLK 173


>ref|XP_006417992.1| hypothetical protein EUTSA_v10009524mg [Eutrema salsugineum]
           gi|557095763|gb|ESQ36345.1| hypothetical protein
           EUTSA_v10009524mg [Eutrema salsugineum]
          Length = 500

 Score =  236 bits (602), Expect = 2e-60
 Identities = 108/175 (61%), Positives = 139/175 (79%)
 Frame = -1

Query: 526 ERDVVSWTALIGGFVKKKRFEEALEWFQYMQLSVVQPDSVTMVSVLSAVANLGFLGLGLW 347
           +RD++SWTA++ GFVKK   EEAL WF+ MQ+S V+PD V +++ L+A  NLG L  GLW
Sbjct: 174 DRDLISWTAMMNGFVKKGFHEEALAWFREMQISGVEPDYVAIIAALAACTNLGALSFGLW 233

Query: 346 LHRYMLAHDFRNNTRVNNSLIDMYCRCGSVDLARQVFKIMSRRSLVSWNSIIVGLAMNGY 167
           +HRY+++HDF+NN RV+NSLID+YCRCG V+ ARQVF  M +R++VSWNS+IVG A NG 
Sbjct: 234 VHRYVMSHDFKNNVRVSNSLIDLYCRCGCVEFARQVFDKMEKRTVVSWNSVIVGFAANGN 293

Query: 166 AEECLDYFNLMQKDGFEPDGVTFTGALTACSHAGLVNEGLRLFKVMMEVHKISPR 2
           A+E L YF  MQ++GF+PD VTFTGALTACSH GLV EGLR F+ M   ++ISPR
Sbjct: 294 ADESLVYFRKMQEEGFKPDAVTFTGALTACSHVGLVEEGLRYFQTMKRDYRISPR 348



 Score = 79.7 bits (195), Expect = 4e-13
 Identities = 58/197 (29%), Positives = 90/197 (45%), Gaps = 34/197 (17%)
 Frame = -1

Query: 514 VSWTALIGGFVKKKRFEEALEWFQYMQLSVVQPDSVTMVSVLSAVANL--GFLGLGLWLH 341
           VSWT+ I    +  R  +A + F  M+L+ V+P+ +T +++LS   +   G   LG  LH
Sbjct: 43  VSWTSRITLLSRNGRLADAAKEFSDMRLAGVEPNHITFIALLSGCGDFPSGSEALGDLLH 102

Query: 340 RYMLAHDF-RNNTRVNNSLIDMYCRCGSVDLARQVFKIMSRRSLVSWNSIIVGLAMN--- 173
            Y       RN+  V  +++ MY + G    AR VF  M  ++ V+WN++I G   N   
Sbjct: 103 GYACKLGLDRNHVMVGTAILGMYSKRGRFRKARLVFDYMEDKNSVTWNTMIDGYMRNGQV 162

Query: 172 ----------------------------GYAEECLDYFNLMQKDGFEPDGVTFTGALTAC 77
                                       G+ EE L +F  MQ  G EPD V    AL AC
Sbjct: 163 YDAVKMFDEMPDRDLISWTAMMNGFVKKGFHEEALAWFREMQISGVEPDYVAIIAALAAC 222

Query: 76  SHAGLVNEGLRLFKVMM 26
           ++ G ++ GL + + +M
Sbjct: 223 TNLGALSFGLWVHRYVM 239


>gb|AEP33748.1| chloroplast biogenesis 19, partial [Capsella bursa-pastoris]
          Length = 489

 Score =  234 bits (597), Expect = 9e-60
 Identities = 108/175 (61%), Positives = 137/175 (78%)
 Frame = -1

Query: 526 ERDVVSWTALIGGFVKKKRFEEALEWFQYMQLSVVQPDSVTMVSVLSAVANLGFLGLGLW 347
           ERD++SWTA+I GFVKK   EEAL WF+ MQ+S V+PD V +++ L+A  NLG L  GLW
Sbjct: 157 ERDLISWTAMINGFVKKGFHEEALAWFREMQISGVKPDYVAIIAALNACTNLGALSFGLW 216

Query: 346 LHRYMLAHDFRNNTRVNNSLIDMYCRCGSVDLARQVFKIMSRRSLVSWNSIIVGLAMNGY 167
           +HRY+++ DF+NN +V+NSLID+YCRCG V+ AR+VF  M +R++VSWNS+IVG A NG 
Sbjct: 217 VHRYVMSQDFKNNVKVSNSLIDLYCRCGCVEFAREVFDKMEKRTVVSWNSVIVGFAANGN 276

Query: 166 AEECLDYFNLMQKDGFEPDGVTFTGALTACSHAGLVNEGLRLFKVMMEVHKISPR 2
           A E L YF  MQ++GF+PD VTFTGALTACSH GLV EGLR F+ M   H+ISPR
Sbjct: 277 AHESLVYFRKMQEEGFKPDAVTFTGALTACSHVGLVEEGLRYFQTMKRDHRISPR 331



 Score = 90.9 bits (224), Expect = 2e-16
 Identities = 63/198 (31%), Positives = 96/198 (48%), Gaps = 34/198 (17%)
 Frame = -1

Query: 517 VVSWTALIGGFVKKKRFEEALEWFQYMQLSVVQPDSVTMVSVLSAVANL--GFLGLGLWL 344
           +VSWT+ I    +  R  EA + F  M+L+ V+P+ +T +++LS   +   G   LG  L
Sbjct: 25  IVSWTSRITLLTRNGRLAEAAKEFSDMRLAGVEPNHITFIALLSGCGDFSSGSEALGDLL 84

Query: 343 HRY--MLAHD-------------FRNNTRVN-----------------NSLIDMYCRCGS 260
           H Y   L HD             +  ++RV                  N++ID Y R G 
Sbjct: 85  HGYACKLGHDRTHVMVGTAILGMYSKHSRVKKARLVFDYMEDKNSVTWNTMIDGYMRNGQ 144

Query: 259 VDLARQVFKIMSRRSLVSWNSIIVGLAMNGYAEECLDYFNLMQKDGFEPDGVTFTGALTA 80
           VD A ++F  M  R L+SW ++I G    G+ EE L +F  MQ  G +PD V    AL A
Sbjct: 145 VDNAVKMFDKMPERDLISWTAMINGFVKKGFHEEALAWFREMQISGVKPDYVAIIAALNA 204

Query: 79  CSHAGLVNEGLRLFKVMM 26
           C++ G ++ GL + + +M
Sbjct: 205 CTNLGALSFGLWVHRYVM 222


>ref|XP_006303598.1| hypothetical protein CARUB_v10011161mg [Capsella rubella]
           gi|482572309|gb|EOA36496.1| hypothetical protein
           CARUB_v10011161mg [Capsella rubella]
          Length = 506

 Score =  233 bits (595), Expect = 2e-59
 Identities = 108/175 (61%), Positives = 136/175 (77%)
 Frame = -1

Query: 526 ERDVVSWTALIGGFVKKKRFEEALEWFQYMQLSVVQPDSVTMVSVLSAVANLGFLGLGLW 347
           ERD +SWTA+I GFVKK   EEAL WF+ MQ+S V+PD V +++ L+A  NLG L  GLW
Sbjct: 174 ERDFISWTAMINGFVKKGFHEEALAWFREMQISGVKPDYVAIIAALNACTNLGALSFGLW 233

Query: 346 LHRYMLAHDFRNNTRVNNSLIDMYCRCGSVDLARQVFKIMSRRSLVSWNSIIVGLAMNGY 167
           +HRY+++ DF+NN +V+NSLID+YCRCG V+ AR+VF  M +R++VSWNS+IVG A NG 
Sbjct: 234 VHRYVMSQDFKNNVKVSNSLIDLYCRCGCVEFAREVFDKMEKRTVVSWNSVIVGFAANGN 293

Query: 166 AEECLDYFNLMQKDGFEPDGVTFTGALTACSHAGLVNEGLRLFKVMMEVHKISPR 2
           A E L YF  MQ++GF+PD VTFTGALTACSH GLV EGLR F+ M   H+ISPR
Sbjct: 294 AHESLVYFRKMQEEGFKPDAVTFTGALTACSHVGLVEEGLRYFQTMKRNHRISPR 348



 Score = 84.3 bits (207), Expect = 1e-14
 Identities = 59/198 (29%), Positives = 92/198 (46%), Gaps = 34/198 (17%)
 Frame = -1

Query: 517 VVSWTALIGGFVKKKRFEEALEWFQYMQLSVVQPDSVTMVSVLSAVANL--GFLGLGLWL 344
           +VSWT+ I    +  R  EA + F  M+L+ V+P+ +T +++LS   +   G   LG  L
Sbjct: 42  IVSWTSRITLLTRNGRLAEAAKEFSNMRLAGVEPNHITFIALLSGCGDFSSGSEALGDLL 101

Query: 343 HRY------------------------------MLAHDFR--NNTRVNNSLIDMYCRCGS 260
           H Y                               L  D+    N+   N++I+ Y R G 
Sbjct: 102 HGYACKLGLDRTHVMVGTAILGMYSKRSRVKKARLVFDYMEDKNSVTWNTMINGYMRNGQ 161

Query: 259 VDLARQVFKIMSRRSLVSWNSIIVGLAMNGYAEECLDYFNLMQKDGFEPDGVTFTGALTA 80
           VD A ++F  M  R  +SW ++I G    G+ EE L +F  MQ  G +PD V    AL A
Sbjct: 162 VDNAVKMFDKMPERDFISWTAMINGFVKKGFHEEALAWFREMQISGVKPDYVAIIAALNA 221

Query: 79  CSHAGLVNEGLRLFKVMM 26
           C++ G ++ GL + + +M
Sbjct: 222 CTNLGALSFGLWVHRYVM 239


>gb|AEP33751.1| chloroplast biogenesis 19, partial [Lepidium virginicum]
          Length = 485

 Score =  233 bits (594), Expect = 2e-59
 Identities = 109/175 (62%), Positives = 136/175 (77%)
 Frame = -1

Query: 526 ERDVVSWTALIGGFVKKKRFEEALEWFQYMQLSVVQPDSVTMVSVLSAVANLGFLGLGLW 347
           +RD++SWTA+I GFVKK   EEAL WF+ MQ+S V PD V ++S ++A  NLG L  GLW
Sbjct: 153 DRDLISWTAMITGFVKKGFHEEALAWFREMQISGVNPDYVAIISAVAACTNLGALSFGLW 212

Query: 346 LHRYMLAHDFRNNTRVNNSLIDMYCRCGSVDLARQVFKIMSRRSLVSWNSIIVGLAMNGY 167
           +HRY+L+ DFRNN RV+NSLID+YCRCG V+ ARQVF  M +R++VSWNS+IVG A NG 
Sbjct: 213 VHRYVLSQDFRNNVRVSNSLIDLYCRCGCVEFARQVFDKMEKRTVVSWNSVIVGFAANGN 272

Query: 166 AEECLDYFNLMQKDGFEPDGVTFTGALTACSHAGLVNEGLRLFKVMMEVHKISPR 2
           A E L YF  MQ++GF PDGVTFTGALTACSH GLV EG + F++M   ++ISPR
Sbjct: 273 ANESLVYFRKMQREGFTPDGVTFTGALTACSHVGLVEEGFQYFQMMKHDYRISPR 327



 Score = 91.3 bits (225), Expect = 1e-16
 Identities = 62/198 (31%), Positives = 93/198 (46%), Gaps = 34/198 (17%)
 Frame = -1

Query: 517 VVSWTALIGGFVKKKRFEEALEWFQYMQLSVVQPDSVTMVSVLSAVANL--GFLGLGLWL 344
           +VSWT+ I    +  R  EA+  F  M+L+ ++P+ +T +++LSA  N   G  GLG  L
Sbjct: 21  IVSWTSRITLLSRDGRLAEAVREFSDMRLAGIEPNHITFIALLSACGNFPSGSEGLGYLL 80

Query: 343 HRY------------------------------MLAHDF--RNNTRVNNSLIDMYCRCGS 260
           H Y                               L  D+    N+   N++ID Y R G 
Sbjct: 81  HGYACKLGLERSHVMVGTAILGMYSKSGHLRKARLVFDYIEDKNSVTWNTMIDGYMRNGQ 140

Query: 259 VDLARQVFKIMSRRSLVSWNSIIVGLAMNGYAEECLDYFNLMQKDGFEPDGVTFTGALTA 80
           VD A  VF  M  R L+SW ++I G    G+ EE L +F  MQ  G  PD V    A+ A
Sbjct: 141 VDNAVDVFDKMPDRDLISWTAMITGFVKKGFHEEALAWFREMQISGVNPDYVAIISAVAA 200

Query: 79  CSHAGLVNEGLRLFKVMM 26
           C++ G ++ GL + + ++
Sbjct: 201 CTNLGALSFGLWVHRYVL 218


>gb|AEP33754.1| chloroplast biogenesis 19, partial [Nasturtium officinale]
          Length = 447

 Score =  233 bits (593), Expect = 3e-59
 Identities = 107/174 (61%), Positives = 136/174 (78%)
 Frame = -1

Query: 523 RDVVSWTALIGGFVKKKRFEEALEWFQYMQLSVVQPDSVTMVSVLSAVANLGFLGLGLWL 344
           RD++SWTA++ GFVKK   EEAL WF+ MQ+S V+PD V +++ L+A  NLG L  GLW+
Sbjct: 116 RDLISWTAMVNGFVKKGFHEEALSWFREMQISGVKPDYVAIIAALAACTNLGALSFGLWI 175

Query: 343 HRYMLAHDFRNNTRVNNSLIDMYCRCGSVDLARQVFKIMSRRSLVSWNSIIVGLAMNGYA 164
           HRY+++ DF+NN RV+NSLID+YCRCG V+ ARQVF  M +R++VSWNS+IVG A NG A
Sbjct: 176 HRYVMSQDFKNNVRVSNSLIDLYCRCGCVEFARQVFDKMEKRTVVSWNSVIVGFAANGNA 235

Query: 163 EECLDYFNLMQKDGFEPDGVTFTGALTACSHAGLVNEGLRLFKVMMEVHKISPR 2
            E L YF  MQ++GF+PD VTFTGALTACSH GLV EGLR F+ M   ++ISPR
Sbjct: 236 HESLFYFRKMQEEGFKPDAVTFTGALTACSHVGLVEEGLRYFQTMKRDYRISPR 289



 Score = 72.4 bits (176), Expect = 6e-11
 Identities = 50/175 (28%), Positives = 80/175 (45%), Gaps = 34/175 (19%)
 Frame = -1

Query: 448 FQYMQLSVVQPDSVTMVSVLSAVANL--GFLGLGLWLHRYM------------------- 332
           F  M+ + V+P+ +T +++LS   +   G   LG  LH Y                    
Sbjct: 6   FSDMRFAGVEPNHITFIALLSGCGDFPSGSEALGDLLHGYACKLGLDRTHVMVGTAILGM 65

Query: 331 -----------LAHDFRN--NTRVNNSLIDMYCRCGSVDLARQVFKIMSRRSLVSWNSII 191
                      L  D+    N+   N++ID Y R G V+ A ++F  M  R L+SW +++
Sbjct: 66  YSKRGRFRKARLIFDYMEDKNSVTWNTMIDGYMRSGQVNTAVKLFDEMLNRDLISWTAMV 125

Query: 190 VGLAMNGYAEECLDYFNLMQKDGFEPDGVTFTGALTACSHAGLVNEGLRLFKVMM 26
            G    G+ EE L +F  MQ  G +PD V    AL AC++ G ++ GL + + +M
Sbjct: 126 NGFVKKGFHEEALSWFREMQISGVKPDYVAIIAALAACTNLGALSFGLWIHRYVM 180



 Score = 57.4 bits (137), Expect = 2e-06
 Identities = 36/118 (30%), Positives = 65/118 (55%), Gaps = 4/118 (3%)
 Frame = -1

Query: 526 ERDVVSWTALIGGFVKKKRFEEALEWFQYMQLSVVQPDSVTMVSVLSAVANLGFLGLGLW 347
           +R VVSW ++I GF       E+L +F+ MQ    +PD+VT    L+A +++G +  GL 
Sbjct: 216 KRTVVSWNSVIVGFAANGNAHESLFYFRKMQEEGFKPDAVTFTGALTACSHVGLVEEGL- 274

Query: 346 LHRYM--LAHDFRNNTRVNN--SLIDMYCRCGSVDLARQVFKIMSRRSLVSWNSIIVG 185
             RY   +  D+R + R+ +   ++D+Y R G ++ A +V + M  +     N +++G
Sbjct: 275 --RYFQTMKRDYRISPRIEHYGCIVDLYSRAGRLEDALKVVQSMPMKP----NEVVIG 326


>ref|NP_172066.3| pentatricopeptide repeat protein PDE247 [Arabidopsis thaliana]
           gi|75191933|sp|Q9MA50.1|PPR13_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At1g05750, chloroplastic; AltName: Full=Protein PIGMENT
           DEFECTIVE 247; Flags: Precursor
           gi|6850304|gb|AAF29381.1|AC009999_1 Contains similarity
           to a hypothetical protein from Arabidopsis thaliana
           gb|AC007109.6, and contains two DUF17 PF|01535 domains
           [Arabidopsis thaliana] gi|62320576|dbj|BAD95203.1|
           hypothetical protein [Arabidopsis thaliana]
           gi|332189766|gb|AEE27887.1| pentatricopeptide repeat
           protein PDE247 [Arabidopsis thaliana]
          Length = 500

 Score =  232 bits (591), Expect = 4e-59
 Identities = 110/175 (62%), Positives = 137/175 (78%)
 Frame = -1

Query: 526 ERDVVSWTALIGGFVKKKRFEEALEWFQYMQLSVVQPDSVTMVSVLSAVANLGFLGLGLW 347
           ERD++SWTA+I GFVKK   EEAL WF+ MQ+S V+PD V +++ L+A  NLG L  GLW
Sbjct: 168 ERDLISWTAMINGFVKKGYQEEALLWFREMQISGVKPDYVAIIAALNACTNLGALSFGLW 227

Query: 346 LHRYMLAHDFRNNTRVNNSLIDMYCRCGSVDLARQVFKIMSRRSLVSWNSIIVGLAMNGY 167
           +HRY+L+ DF+NN RV+NSLID+YCRCG V+ ARQVF  M +R++VSWNS+IVG A NG 
Sbjct: 228 VHRYVLSQDFKNNVRVSNSLIDLYCRCGCVEFARQVFYNMEKRTVVSWNSVIVGFAANGN 287

Query: 166 AEECLDYFNLMQKDGFEPDGVTFTGALTACSHAGLVNEGLRLFKVMMEVHKISPR 2
           A E L YF  MQ+ GF+PD VTFTGALTACSH GLV EGLR F++M   ++ISPR
Sbjct: 288 AHESLVYFRKMQEKGFKPDAVTFTGALTACSHVGLVEEGLRYFQIMKCDYRISPR 342



 Score = 87.8 bits (216), Expect = 1e-15
 Identities = 61/197 (30%), Positives = 91/197 (46%), Gaps = 34/197 (17%)
 Frame = -1

Query: 514 VSWTALIGGFVKKKRFEEALEWFQYMQLSVVQPDSVTMVSVLSAVANL--GFLGLGLWLH 341
           VSWT+ I    +  R  EA + F  M L+ V+P+ +T +++LS   +   G   LG  LH
Sbjct: 37  VSWTSRINLLTRNGRLAEAAKEFSDMTLAGVEPNHITFIALLSGCGDFTSGSEALGDLLH 96

Query: 340 RYM------------------------------LAHDFRN--NTRVNNSLIDMYCRCGSV 257
            Y                               L  D+    N+   N++ID Y R G V
Sbjct: 97  GYACKLGLDRNHVMVGTAIIGMYSKRGRFKKARLVFDYMEDKNSVTWNTMIDGYMRSGQV 156

Query: 256 DLARQVFKIMSRRSLVSWNSIIVGLAMNGYAEECLDYFNLMQKDGFEPDGVTFTGALTAC 77
           D A ++F  M  R L+SW ++I G    GY EE L +F  MQ  G +PD V    AL AC
Sbjct: 157 DNAAKMFDKMPERDLISWTAMINGFVKKGYQEEALLWFREMQISGVKPDYVAIIAALNAC 216

Query: 76  SHAGLVNEGLRLFKVMM 26
           ++ G ++ GL + + ++
Sbjct: 217 TNLGALSFGLWVHRYVL 233


>gb|AEP33746.1| chloroplast biogenesis 19, partial [Barbarea verna]
          Length = 494

 Score =  232 bits (591), Expect = 4e-59
 Identities = 108/175 (61%), Positives = 136/175 (77%)
 Frame = -1

Query: 526 ERDVVSWTALIGGFVKKKRFEEALEWFQYMQLSVVQPDSVTMVSVLSAVANLGFLGLGLW 347
           ERD++SWTA+I GFVKK   EEAL WF+ MQ+S V+PD V +++ L+A  +LG L  GLW
Sbjct: 162 ERDLISWTAMINGFVKKGFHEEALAWFREMQISGVKPDYVAIIAALAACTHLGALSFGLW 221

Query: 346 LHRYMLAHDFRNNTRVNNSLIDMYCRCGSVDLARQVFKIMSRRSLVSWNSIIVGLAMNGY 167
           +HRY++  DF+NN RV+NSLID+YCRCG V+ AR+VF  M +R++VSWNS+IVG A NG 
Sbjct: 222 VHRYVMNQDFKNNIRVSNSLIDLYCRCGCVEFAREVFDKMEKRTVVSWNSVIVGFAANGN 281

Query: 166 AEECLDYFNLMQKDGFEPDGVTFTGALTACSHAGLVNEGLRLFKVMMEVHKISPR 2
           A E L YF  MQ++GF+PD VTFTGALTACSH GLV EGLR F+ M   H+ISPR
Sbjct: 282 AHESLVYFRKMQEEGFKPDAVTFTGALTACSHVGLVEEGLRYFQTMKRDHRISPR 336



 Score = 89.0 bits (219), Expect = 6e-16
 Identities = 62/197 (31%), Positives = 93/197 (47%), Gaps = 34/197 (17%)
 Frame = -1

Query: 514 VSWTALIGGFVKKKRFEEALEWFQYMQLSVVQPDSVTMVSVLSAVANL--GFLGLGLWLH 341
           VSWT+ I    +  R  EA + F  M+L+ V+P+ +T +++LS   ++  G   LG  LH
Sbjct: 31  VSWTSRITLLSRNGRLAEAAKEFSSMRLAGVEPNHITFIALLSGCGDVSSGSEALGDLLH 90

Query: 340 RYM------------------------------LAHDFRN--NTRVNNSLIDMYCRCGSV 257
            Y                               L  DF    N+   N++ID Y R G V
Sbjct: 91  GYACKLGLDRTHVMVGTAILGMYSKRGRFGKARLVFDFMEDKNSVTWNTMIDGYMRSGQV 150

Query: 256 DLARQVFKIMSRRSLVSWNSIIVGLAMNGYAEECLDYFNLMQKDGFEPDGVTFTGALTAC 77
           + A ++F  M  R L+SW ++I G    G+ EE L +F  MQ  G +PD V    AL AC
Sbjct: 151 NNAVKLFDEMPERDLISWTAMINGFVKKGFHEEALAWFREMQISGVKPDYVAIIAALAAC 210

Query: 76  SHAGLVNEGLRLFKVMM 26
           +H G ++ GL + + +M
Sbjct: 211 THLGALSFGLWVHRYVM 227


>gb|AEP33747.1| chloroplast biogenesis 19, partial [Brassica oleracea]
          Length = 485

 Score =  231 bits (589), Expect = 8e-59
 Identities = 107/175 (61%), Positives = 138/175 (78%)
 Frame = -1

Query: 526 ERDVVSWTALIGGFVKKKRFEEALEWFQYMQLSVVQPDSVTMVSVLSAVANLGFLGLGLW 347
           ERD++SWTA+I GFVKK   EEAL WF+ MQ+S V+PD V +++ L+A ANLG L  GLW
Sbjct: 157 ERDLISWTAMINGFVKKGLHEEALAWFREMQVSGVKPDYVAVIAALAACANLGALSFGLW 216

Query: 346 LHRYMLAHDFRNNTRVNNSLIDMYCRCGSVDLARQVFKIMSRRSLVSWNSIIVGLAMNGY 167
           +HR++++ DF+NN RV+NSLID+YCRCG V+ ARQVF  M +R++VSWNS+IVG A NG+
Sbjct: 217 VHRFVVSQDFKNNVRVSNSLIDLYCRCGCVEFARQVFDEMEKRTVVSWNSVIVGFAANGH 276

Query: 166 AEECLDYFNLMQKDGFEPDGVTFTGALTACSHAGLVNEGLRLFKVMMEVHKISPR 2
           A E L YF  MQ++ F+PD VTFTGALTACSH GLV EG+R F+ M   ++ISPR
Sbjct: 277 AHESLVYFRRMQEERFKPDAVTFTGALTACSHVGLVEEGVRYFEAMKRDYRISPR 331



 Score = 84.7 bits (208), Expect = 1e-14
 Identities = 61/186 (32%), Positives = 90/186 (48%), Gaps = 30/186 (16%)
 Frame = -1

Query: 514 VSWTALIGGFVKKKRFEEALEWFQYMQLSVVQPDSVTMVSVLSAVANLGFLG-------- 359
           VSWT+ I    +  R  EA + F  M+L+ V+P+ +T++++LS  A+    G        
Sbjct: 30  VSWTSRITLLSRNGRLAEAAKEFTAMRLAGVEPNHITLIALLSGCADCEPFGDSLHGYAC 89

Query: 358 -LGLWLHRYMLA----------HDFRN-----------NTRVNNSLIDMYCRCGSVDLAR 245
            LGL  ++ M+             FR            N+   N++ID Y R G VD A 
Sbjct: 90  KLGLDRNQVMVGTAILGMYSKRRRFRKARLVFDRVEDKNSVTWNTMIDGYMRSGRVDDAA 149

Query: 244 QVFKIMSRRSLVSWNSIIVGLAMNGYAEECLDYFNLMQKDGFEPDGVTFTGALTACSHAG 65
           +VF  M  R L+SW ++I G    G  EE L +F  MQ  G +PD V    AL AC++ G
Sbjct: 150 KVFDEMPERDLISWTAMINGFVKKGLHEEALAWFREMQVSGVKPDYVAVIAALAACANLG 209

Query: 64  LVNEGL 47
            ++ GL
Sbjct: 210 ALSFGL 215


>ref|XP_002889563.1| PDE247 [Arabidopsis lyrata subsp. lyrata]
           gi|297335405|gb|EFH65822.1| PDE247 [Arabidopsis lyrata
           subsp. lyrata]
          Length = 500

 Score =  231 bits (589), Expect = 8e-59
 Identities = 107/175 (61%), Positives = 137/175 (78%)
 Frame = -1

Query: 526 ERDVVSWTALIGGFVKKKRFEEALEWFQYMQLSVVQPDSVTMVSVLSAVANLGFLGLGLW 347
           ERD++SWTA+I GFV K   EEAL WF+ MQ+S V+PD V +++ L+A  NLG L  GLW
Sbjct: 168 ERDLISWTAMINGFVNKGFHEEALAWFREMQISGVKPDYVAIIAALNACTNLGALSFGLW 227

Query: 346 LHRYMLAHDFRNNTRVNNSLIDMYCRCGSVDLARQVFKIMSRRSLVSWNSIIVGLAMNGY 167
           +HRY+++ DF+NN RV+NSLID+YCRCG V+ ARQVF  M +R++VSWNS+IVG A NG 
Sbjct: 228 VHRYVMSQDFKNNVRVSNSLIDLYCRCGCVEFARQVFDKMEKRTVVSWNSVIVGFAANGN 287

Query: 166 AEECLDYFNLMQKDGFEPDGVTFTGALTACSHAGLVNEGLRLFKVMMEVHKISPR 2
           A E L YF  MQ++ F+PD VTFTGALTACSH GLV EGLR F++M+  ++ISPR
Sbjct: 288 AHESLVYFRKMQEERFKPDAVTFTGALTACSHVGLVEEGLRYFQIMISDYRISPR 342



 Score = 82.0 bits (201), Expect = 7e-14
 Identities = 59/199 (29%), Positives = 91/199 (45%), Gaps = 34/199 (17%)
 Frame = -1

Query: 520 DVVSWTALIGGFVKKKRFEEALEWFQYMQLSVVQPDSVTMVSVLSAVANL--GFLGLGLW 347
           + VSWT+ I    +  R  EA + F  M+L+ V+P+ +T +++LS   +   G   LG  
Sbjct: 35  NTVSWTSRITLLTRNGRLAEAAKEFSDMRLAGVEPNHITFIAILSGCGDFPSGSEALGDL 94

Query: 346 LHRYMLAHDF-RNNTRVNNSLIDMYCRCGSVDLARQVFKIMSRRSLVSWN---------- 200
           LH Y       RN+  V  ++I MY + G V  AR VF  M  ++ V+WN          
Sbjct: 95  LHGYACKLGLDRNHVMVGTAIIGMYSKRGRVKKARCVFDYMEDKNSVTWNTMIDGYMRSG 154

Query: 199 ---------------------SIIVGLAMNGYAEECLDYFNLMQKDGFEPDGVTFTGALT 83
                                ++I G    G+ EE L +F  MQ  G +PD V    AL 
Sbjct: 155 QVDNAAKMFDKMPERDLISWTAMINGFVNKGFHEEALAWFREMQISGVKPDYVAIIAALN 214

Query: 82  ACSHAGLVNEGLRLFKVMM 26
           AC++ G ++ GL + + +M
Sbjct: 215 ACTNLGALSFGLWVHRYVM 233