BLASTX nr result
ID: Catharanthus22_contig00025275
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Catharanthus22_contig00025275
(681 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_003602518.1| Splicing factor-like protein [Medicago trunc... 75 1e-11
ref|XP_003602517.1| Splicing factor-like protein [Medicago trunc... 75 1e-11
gb|EOX97616.1| Splicing factor isoform 4 [Theobroma cacao] 74 4e-11
gb|EOX97615.1| Splicing factor isoform 3 [Theobroma cacao] 74 4e-11
gb|EOX97613.1| Splicing factor isoform 1 [Theobroma cacao] gi|50... 74 4e-11
gb|EXC16553.1| RNA-binding protein 39 [Morus notabilis] 74 5e-11
ref|XP_006589727.1| PREDICTED: RNA-binding protein 39-like isofo... 74 5e-11
gb|ESW14802.1| hypothetical protein PHAVU_007G018500g [Phaseolus... 74 5e-11
ref|XP_002279887.2| PREDICTED: RNA-binding protein rsd1-like [Vi... 74 5e-11
ref|XP_003555861.1| PREDICTED: RNA-binding protein 39-like [Glyc... 74 5e-11
ref|XP_003536719.1| PREDICTED: RNA-binding protein 39-like isofo... 74 5e-11
emb|CBI37850.3| unnamed protein product [Vitis vinifera] 74 5e-11
ref|XP_002516388.1| splicing factor, putative [Ricinus communis]... 74 5e-11
ref|XP_006409370.1| hypothetical protein EUTSA_v10022624mg [Eutr... 73 7e-11
ref|XP_006299838.1| hypothetical protein CARUB_v10016041mg [Caps... 73 7e-11
ref|NP_001189538.1| splicing factor, CC1-like protein [Arabidops... 73 7e-11
ref|NP_001189537.1| splicing factor, CC1-like protein [Arabidops... 73 7e-11
ref|XP_002886087.1| hypothetical protein ARALYDRAFT_480573 [Arab... 73 7e-11
gb|AAM20703.1| putative splicing factor [Arabidopsis thaliana] 73 7e-11
gb|AAM62839.1| putative splicing factor [Arabidopsis thaliana] 73 7e-11
>ref|XP_003602518.1| Splicing factor-like protein [Medicago truncatula]
gi|355491566|gb|AES72769.1| Splicing factor-like protein
[Medicago truncatula]
Length = 766
Score = 75.5 bits (184), Expect = 1e-11
Identities = 43/77 (55%), Positives = 53/77 (68%), Gaps = 1/77 (1%)
Frame = +2
Query: 446 IFLVYSFFTALKLQRRKFLFIFW-VIFLLT*QFLRYIEFYDVMSVPVAIALSGQSLLGHS 622
IF +T ++L +FLF + ++ ++ RYIEFYD MSVP+AIALSGQ LLG
Sbjct: 369 IFKYTKRYTLVELSALEFLFPYISLLCFVSFDCCRYIEFYDAMSVPMAIALSGQLLLGQP 428
Query: 623 VMVKPSEAEKNLFQSTT 673
VMVKPSEAEKNL QS T
Sbjct: 429 VMVKPSEAEKNLVQSNT 445
>ref|XP_003602517.1| Splicing factor-like protein [Medicago truncatula]
gi|355491565|gb|AES72768.1| Splicing factor-like protein
[Medicago truncatula]
Length = 731
Score = 75.5 bits (184), Expect = 1e-11
Identities = 43/77 (55%), Positives = 53/77 (68%), Gaps = 1/77 (1%)
Frame = +2
Query: 446 IFLVYSFFTALKLQRRKFLFIFW-VIFLLT*QFLRYIEFYDVMSVPVAIALSGQSLLGHS 622
IF +T ++L +FLF + ++ ++ RYIEFYD MSVP+AIALSGQ LLG
Sbjct: 369 IFKYTKRYTLVELSALEFLFPYISLLCFVSFDCCRYIEFYDAMSVPMAIALSGQLLLGQP 428
Query: 623 VMVKPSEAEKNLFQSTT 673
VMVKPSEAEKNL QS T
Sbjct: 429 VMVKPSEAEKNLVQSNT 445
>gb|EOX97616.1| Splicing factor isoform 4 [Theobroma cacao]
Length = 452
Score = 73.9 bits (180), Expect = 4e-11
Identities = 37/43 (86%), Positives = 39/43 (90%)
Frame = +2
Query: 548 YIEFYDVMSVPVAIALSGQSLLGHSVMVKPSEAEKNLFQSTTV 676
YIEFYDVMSVP+AIALSGQ LLG VMVKPSEAEKNL QSTT+
Sbjct: 108 YIEFYDVMSVPMAIALSGQPLLGQPVMVKPSEAEKNLVQSTTL 150
>gb|EOX97615.1| Splicing factor isoform 3 [Theobroma cacao]
Length = 545
Score = 73.9 bits (180), Expect = 4e-11
Identities = 37/43 (86%), Positives = 39/43 (90%)
Frame = +2
Query: 548 YIEFYDVMSVPVAIALSGQSLLGHSVMVKPSEAEKNLFQSTTV 676
YIEFYDVMSVP+AIALSGQ LLG VMVKPSEAEKNL QSTT+
Sbjct: 237 YIEFYDVMSVPMAIALSGQPLLGQPVMVKPSEAEKNLVQSTTL 279
>gb|EOX97613.1| Splicing factor isoform 1 [Theobroma cacao]
gi|508705718|gb|EOX97614.1| Splicing factor isoform 1
[Theobroma cacao]
Length = 581
Score = 73.9 bits (180), Expect = 4e-11
Identities = 37/43 (86%), Positives = 39/43 (90%)
Frame = +2
Query: 548 YIEFYDVMSVPVAIALSGQSLLGHSVMVKPSEAEKNLFQSTTV 676
YIEFYDVMSVP+AIALSGQ LLG VMVKPSEAEKNL QSTT+
Sbjct: 237 YIEFYDVMSVPMAIALSGQPLLGQPVMVKPSEAEKNLVQSTTL 279
>gb|EXC16553.1| RNA-binding protein 39 [Morus notabilis]
Length = 811
Score = 73.6 bits (179), Expect = 5e-11
Identities = 37/42 (88%), Positives = 38/42 (90%)
Frame = +2
Query: 548 YIEFYDVMSVPVAIALSGQSLLGHSVMVKPSEAEKNLFQSTT 673
YIEFYDVMSVP+AIALSGQ LLG VMVKPSEAEKNL QSTT
Sbjct: 150 YIEFYDVMSVPMAIALSGQPLLGQPVMVKPSEAEKNLVQSTT 191
>ref|XP_006589727.1| PREDICTED: RNA-binding protein 39-like isoform X2 [Glycine max]
Length = 421
Score = 73.6 bits (179), Expect = 5e-11
Identities = 37/42 (88%), Positives = 38/42 (90%)
Frame = +2
Query: 548 YIEFYDVMSVPVAIALSGQSLLGHSVMVKPSEAEKNLFQSTT 673
YIEFYDVMSVP+AIALSGQ LLG VMVKPSEAEKNL QSTT
Sbjct: 92 YIEFYDVMSVPMAIALSGQPLLGQPVMVKPSEAEKNLVQSTT 133
>gb|ESW14802.1| hypothetical protein PHAVU_007G018500g [Phaseolus vulgaris]
Length = 603
Score = 73.6 bits (179), Expect = 5e-11
Identities = 37/42 (88%), Positives = 38/42 (90%)
Frame = +2
Query: 548 YIEFYDVMSVPVAIALSGQSLLGHSVMVKPSEAEKNLFQSTT 673
YIEFYDVMSVP+AIALSGQ LLG VMVKPSEAEKNL QSTT
Sbjct: 264 YIEFYDVMSVPMAIALSGQPLLGQPVMVKPSEAEKNLVQSTT 305
>ref|XP_002279887.2| PREDICTED: RNA-binding protein rsd1-like [Vitis vinifera]
Length = 609
Score = 73.6 bits (179), Expect = 5e-11
Identities = 37/44 (84%), Positives = 38/44 (86%)
Frame = +2
Query: 548 YIEFYDVMSVPVAIALSGQSLLGHSVMVKPSEAEKNLFQSTTVA 679
YIEFYD MSVP+AIALSGQ LLG VMVKPSEAEKNL QSTT A
Sbjct: 264 YIEFYDAMSVPMAIALSGQPLLGQPVMVKPSEAEKNLVQSTTAA 307
>ref|XP_003555861.1| PREDICTED: RNA-binding protein 39-like [Glycine max]
Length = 600
Score = 73.6 bits (179), Expect = 5e-11
Identities = 37/42 (88%), Positives = 38/42 (90%)
Frame = +2
Query: 548 YIEFYDVMSVPVAIALSGQSLLGHSVMVKPSEAEKNLFQSTT 673
YIEFYDVMSVP+AIALSGQ LLG VMVKPSEAEKNL QSTT
Sbjct: 271 YIEFYDVMSVPMAIALSGQPLLGQPVMVKPSEAEKNLVQSTT 312
>ref|XP_003536719.1| PREDICTED: RNA-binding protein 39-like isoform X1 [Glycine max]
Length = 597
Score = 73.6 bits (179), Expect = 5e-11
Identities = 37/42 (88%), Positives = 38/42 (90%)
Frame = +2
Query: 548 YIEFYDVMSVPVAIALSGQSLLGHSVMVKPSEAEKNLFQSTT 673
YIEFYDVMSVP+AIALSGQ LLG VMVKPSEAEKNL QSTT
Sbjct: 268 YIEFYDVMSVPMAIALSGQPLLGQPVMVKPSEAEKNLVQSTT 309
>emb|CBI37850.3| unnamed protein product [Vitis vinifera]
Length = 427
Score = 73.6 bits (179), Expect = 5e-11
Identities = 37/44 (84%), Positives = 38/44 (86%)
Frame = +2
Query: 548 YIEFYDVMSVPVAIALSGQSLLGHSVMVKPSEAEKNLFQSTTVA 679
YIEFYD MSVP+AIALSGQ LLG VMVKPSEAEKNL QSTT A
Sbjct: 82 YIEFYDAMSVPMAIALSGQPLLGQPVMVKPSEAEKNLVQSTTAA 125
>ref|XP_002516388.1| splicing factor, putative [Ricinus communis]
gi|223544486|gb|EEF46005.1| splicing factor, putative
[Ricinus communis]
Length = 609
Score = 73.6 bits (179), Expect = 5e-11
Identities = 37/42 (88%), Positives = 38/42 (90%)
Frame = +2
Query: 548 YIEFYDVMSVPVAIALSGQSLLGHSVMVKPSEAEKNLFQSTT 673
YIEFYDVMSVP+AIALSGQ LLG VMVKPSEAEKNL QSTT
Sbjct: 271 YIEFYDVMSVPMAIALSGQPLLGQPVMVKPSEAEKNLVQSTT 312
>ref|XP_006409370.1| hypothetical protein EUTSA_v10022624mg [Eutrema salsugineum]
gi|557110532|gb|ESQ50823.1| hypothetical protein
EUTSA_v10022624mg [Eutrema salsugineum]
Length = 566
Score = 73.2 bits (178), Expect = 7e-11
Identities = 36/44 (81%), Positives = 38/44 (86%)
Frame = +2
Query: 548 YIEFYDVMSVPVAIALSGQSLLGHSVMVKPSEAEKNLFQSTTVA 679
Y+EFYD MSVP+AIALSGQ LLG VMVKPSEAEKNL QSTT A
Sbjct: 234 YVEFYDTMSVPMAIALSGQPLLGQPVMVKPSEAEKNLVQSTTAA 277
>ref|XP_006299838.1| hypothetical protein CARUB_v10016041mg [Capsella rubella]
gi|482568547|gb|EOA32736.1| hypothetical protein
CARUB_v10016041mg [Capsella rubella]
Length = 550
Score = 73.2 bits (178), Expect = 7e-11
Identities = 36/44 (81%), Positives = 38/44 (86%)
Frame = +2
Query: 548 YIEFYDVMSVPVAIALSGQSLLGHSVMVKPSEAEKNLFQSTTVA 679
Y+EFYD MSVP+AIALSGQ LLG VMVKPSEAEKNL QSTT A
Sbjct: 216 YVEFYDTMSVPMAIALSGQPLLGQPVMVKPSEAEKNLVQSTTAA 259
>ref|NP_001189538.1| splicing factor, CC1-like protein [Arabidopsis thaliana]
gi|330251466|gb|AEC06560.1| splicing factor, CC1-like
protein [Arabidopsis thaliana]
Length = 610
Score = 73.2 bits (178), Expect = 7e-11
Identities = 36/44 (81%), Positives = 38/44 (86%)
Frame = +2
Query: 548 YIEFYDVMSVPVAIALSGQSLLGHSVMVKPSEAEKNLFQSTTVA 679
Y+EFYD MSVP+AIALSGQ LLG VMVKPSEAEKNL QSTT A
Sbjct: 276 YVEFYDTMSVPMAIALSGQPLLGQPVMVKPSEAEKNLVQSTTAA 319
>ref|NP_001189537.1| splicing factor, CC1-like protein [Arabidopsis thaliana]
gi|330251465|gb|AEC06559.1| splicing factor, CC1-like
protein [Arabidopsis thaliana]
Length = 599
Score = 73.2 bits (178), Expect = 7e-11
Identities = 36/44 (81%), Positives = 38/44 (86%)
Frame = +2
Query: 548 YIEFYDVMSVPVAIALSGQSLLGHSVMVKPSEAEKNLFQSTTVA 679
Y+EFYD MSVP+AIALSGQ LLG VMVKPSEAEKNL QSTT A
Sbjct: 265 YVEFYDTMSVPMAIALSGQPLLGQPVMVKPSEAEKNLVQSTTAA 308
>ref|XP_002886087.1| hypothetical protein ARALYDRAFT_480573 [Arabidopsis lyrata subsp.
lyrata] gi|297331927|gb|EFH62346.1| hypothetical protein
ARALYDRAFT_480573 [Arabidopsis lyrata subsp. lyrata]
Length = 557
Score = 73.2 bits (178), Expect = 7e-11
Identities = 36/44 (81%), Positives = 38/44 (86%)
Frame = +2
Query: 548 YIEFYDVMSVPVAIALSGQSLLGHSVMVKPSEAEKNLFQSTTVA 679
Y+EFYD MSVP+AIALSGQ LLG VMVKPSEAEKNL QSTT A
Sbjct: 227 YVEFYDTMSVPMAIALSGQPLLGQPVMVKPSEAEKNLVQSTTAA 270
>gb|AAM20703.1| putative splicing factor [Arabidopsis thaliana]
Length = 420
Score = 73.2 bits (178), Expect = 7e-11
Identities = 36/44 (81%), Positives = 38/44 (86%)
Frame = +2
Query: 548 YIEFYDVMSVPVAIALSGQSLLGHSVMVKPSEAEKNLFQSTTVA 679
Y+EFYD MSVP+AIALSGQ LLG VMVKPSEAEKNL QSTT A
Sbjct: 86 YVEFYDTMSVPMAIALSGQPLLGQPVMVKPSEAEKNLVQSTTAA 129
>gb|AAM62839.1| putative splicing factor [Arabidopsis thaliana]
Length = 560
Score = 73.2 bits (178), Expect = 7e-11
Identities = 36/44 (81%), Positives = 38/44 (86%)
Frame = +2
Query: 548 YIEFYDVMSVPVAIALSGQSLLGHSVMVKPSEAEKNLFQSTTVA 679
Y+EFYD MSVP+AIALSGQ LLG VMVKPSEAEKNL QSTT A
Sbjct: 227 YVEFYDTMSVPMAIALSGQPLLGQPVMVKPSEAEKNLVQSTTAA 270