BLASTX nr result
ID: Catharanthus22_contig00024387
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Catharanthus22_contig00024387
(627 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_006338861.1| PREDICTED: probable RNA-dependent RNA polyme... 226 3e-57
ref|XP_004241116.1| PREDICTED: probable RNA-dependent RNA polyme... 211 2e-52
ref|XP_006451272.1| hypothetical protein CICLE_v10007331mg [Citr... 191 2e-46
ref|XP_006451271.1| hypothetical protein CICLE_v10007331mg [Citr... 191 2e-46
ref|XP_006572940.1| PREDICTED: probable RNA-dependent RNA polyme... 186 4e-45
ref|XP_002280491.1| PREDICTED: probable RNA-dependent RNA polyme... 186 5e-45
ref|XP_006408908.1| hypothetical protein EUTSA_v10001897mg [Eutr... 184 2e-44
ref|XP_006408907.1| hypothetical protein EUTSA_v10001896mg [Eutr... 184 2e-44
ref|XP_004135802.1| PREDICTED: probable RNA-dependent RNA polyme... 183 3e-44
ref|XP_006353487.1| PREDICTED: probable RNA-dependent RNA polyme... 183 4e-44
emb|CBI28010.3| unnamed protein product [Vitis vinifera] 183 4e-44
emb|CAN71520.1| hypothetical protein VITISV_042316 [Vitis vinifera] 183 4e-44
ref|XP_004251631.1| PREDICTED: probable RNA-dependent RNA polyme... 181 2e-43
ref|XP_004288887.1| PREDICTED: probable RNA-dependent RNA polyme... 178 1e-42
ref|XP_004513037.1| PREDICTED: probable RNA-dependent RNA polyme... 176 5e-42
ref|XP_006380470.1| hypothetical protein POPTR_0007s06560g [Popu... 174 1e-41
ref|XP_006380469.1| hypothetical protein POPTR_0007s06560g [Popu... 174 1e-41
ref|XP_002883963.1| RNA-dependent RNA polymerase family protein ... 174 2e-41
ref|NP_179581.2| probable RNA-dependent RNA polymerase 3 [Arabid... 172 7e-41
gb|AAC62125.1| hypothetical protein [Arabidopsis thaliana] 172 7e-41
>ref|XP_006338861.1| PREDICTED: probable RNA-dependent RNA polymerase 3-like [Solanum
tuberosum]
Length = 911
Score = 226 bits (577), Expect = 3e-57
Identities = 121/207 (58%), Positives = 153/207 (73%)
Frame = +2
Query: 2 GFISEDLALKCPQDLGRAKYIGDEDFQRFRDYIEPQNESIAEQREEGARNKEPPLLMQCR 181
GFISEDLA+ CP+D +A+YI DE+++ F D ++ AE+RE + N+EPPLLMQCR
Sbjct: 423 GFISEDLAMHCPKDFVKAEYIKDENYENFVDIVDLD----AERRESVSWNREPPLLMQCR 478
Query: 182 LFKDGVAVKGTLLVNKKLPPGTIQIRTSMVKVEKDVMCPVTKTFNSLEVVAVSNKPKRNY 361
LF +G AVKGT LVN+K+ I IR SMVKVE D TF+SLE+VA+S++P + Y
Sbjct: 479 LFFNGCAVKGTFLVNRKIGSRKIHIRPSMVKVEIDPAISSIPTFDSLEIVAISHRPNKAY 538
Query: 362 LSRYLIALLNYGGVDGKIFLGLLNSALEETKMVYSNKRAALKVAIINGEVDDDSTTARMI 541
LS+ LI+LL+YGGV + F+ LL SALEETK VY KRAALKV I E+DDD TARMI
Sbjct: 539 LSKNLISLLSYGGVQKEYFMELLGSALEETKQVYLRKRAALKVVINYREMDDDCLTARMI 598
Query: 542 SSGEPLSEPHLQDRLSKLVNLERTKLK 622
SSG PL+EPHL+ RLS+L +ERTKL+
Sbjct: 599 SSGIPLNEPHLRARLSRLAKIERTKLR 625
>ref|XP_004241116.1| PREDICTED: probable RNA-dependent RNA polymerase 3-like [Solanum
lycopersicum]
Length = 1011
Score = 211 bits (536), Expect = 2e-52
Identities = 114/207 (55%), Positives = 150/207 (72%)
Frame = +2
Query: 2 GFISEDLALKCPQDLGRAKYIGDEDFQRFRDYIEPQNESIAEQREEGARNKEPPLLMQCR 181
GFISEDLA+ CP+D +A+YI DE+++ F D ++ + ++ E+R +RN++P CR
Sbjct: 423 GFISEDLAMHCPKDFSKAEYIKDENYENFVDIVDLDDVNV-ERRVSVSRNRKP-----CR 476
Query: 182 LFKDGVAVKGTLLVNKKLPPGTIQIRTSMVKVEKDVMCPVTKTFNSLEVVAVSNKPKRNY 361
LF +G AVKGT LVN+K+ I IR SMVKVE D TF+SLE+VA+S++P + Y
Sbjct: 477 LFFNGCAVKGTFLVNRKIGSRKIHIRPSMVKVEIDPTISSIPTFDSLEIVAISHRPNKAY 536
Query: 362 LSRYLIALLNYGGVDGKIFLGLLNSALEETKMVYSNKRAALKVAIINGEVDDDSTTARMI 541
LS+ LI+LL+YGGV + F+ LL SALEETK VY KRAALKVAI E+DD+ TARMI
Sbjct: 537 LSKNLISLLSYGGVHKEYFMELLGSALEETKQVYLRKRAALKVAINYREMDDECLTARMI 596
Query: 542 SSGEPLSEPHLQDRLSKLVNLERTKLK 622
SSG PL+EPHL RLS+L +ERTKL+
Sbjct: 597 SSGIPLNEPHLHARLSRLAKIERTKLR 623
>ref|XP_006451272.1| hypothetical protein CICLE_v10007331mg [Citrus clementina]
gi|568843311|ref|XP_006475557.1| PREDICTED: probable
RNA-dependent RNA polymerase 3-like isoform X2 [Citrus
sinensis] gi|557554498|gb|ESR64512.1| hypothetical
protein CICLE_v10007331mg [Citrus clementina]
Length = 1013
Score = 191 bits (484), Expect = 2e-46
Identities = 112/207 (54%), Positives = 140/207 (67%)
Frame = +2
Query: 2 GFISEDLALKCPQDLGRAKYIGDEDFQRFRDYIEPQNESIAEQREEGARNKEPPLLMQCR 181
GFISEDLALKCP + + K D+ +R D E + R E + EPPLLMQ R
Sbjct: 417 GFISEDLALKCPTYVYKEKCTNDDSTERSIDRKELEANFSDVARTE-SHYGEPPLLMQVR 475
Query: 182 LFKDGVAVKGTLLVNKKLPPGTIQIRTSMVKVEKDVMCPVTKTFNSLEVVAVSNKPKRNY 361
LF +G AVKGTLL+NKKLPP TIQIR SM+KV+ D +TFNSLEVV SN+P++ Y
Sbjct: 476 LFYNGTAVKGTLLLNKKLPPQTIQIRPSMIKVKADRDLSDGQTFNSLEVVKTSNQPRKTY 535
Query: 362 LSRYLIALLNYGGVDGKIFLGLLNSALEETKMVYSNKRAALKVAIINGEVDDDSTTARMI 541
LSR LIALL+YGGV FL +L +AL++ + V+SNKR ALKV+ G +D D T+ARMI
Sbjct: 536 LSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNKRNALKVSFNYGGMDYDFTSARMI 595
Query: 542 SSGEPLSEPHLQDRLSKLVNLERTKLK 622
SG L EP+LQ RLS L+ E+ L+
Sbjct: 596 LSGISLDEPYLQHRLSILMKEEKKSLQ 622
>ref|XP_006451271.1| hypothetical protein CICLE_v10007331mg [Citrus clementina]
gi|568843309|ref|XP_006475556.1| PREDICTED: probable
RNA-dependent RNA polymerase 3-like isoform X1 [Citrus
sinensis] gi|557554497|gb|ESR64511.1| hypothetical
protein CICLE_v10007331mg [Citrus clementina]
Length = 1015
Score = 191 bits (484), Expect = 2e-46
Identities = 112/207 (54%), Positives = 140/207 (67%)
Frame = +2
Query: 2 GFISEDLALKCPQDLGRAKYIGDEDFQRFRDYIEPQNESIAEQREEGARNKEPPLLMQCR 181
GFISEDLALKCP + + K D+ +R D E + R E + EPPLLMQ R
Sbjct: 419 GFISEDLALKCPTYVYKEKCTNDDSTERSIDRKELEANFSDVARTE-SHYGEPPLLMQVR 477
Query: 182 LFKDGVAVKGTLLVNKKLPPGTIQIRTSMVKVEKDVMCPVTKTFNSLEVVAVSNKPKRNY 361
LF +G AVKGTLL+NKKLPP TIQIR SM+KV+ D +TFNSLEVV SN+P++ Y
Sbjct: 478 LFYNGTAVKGTLLLNKKLPPQTIQIRPSMIKVKADRDLSDGQTFNSLEVVKTSNQPRKTY 537
Query: 362 LSRYLIALLNYGGVDGKIFLGLLNSALEETKMVYSNKRAALKVAIINGEVDDDSTTARMI 541
LSR LIALL+YGGV FL +L +AL++ + V+SNKR ALKV+ G +D D T+ARMI
Sbjct: 538 LSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNKRNALKVSFNYGGMDYDFTSARMI 597
Query: 542 SSGEPLSEPHLQDRLSKLVNLERTKLK 622
SG L EP+LQ RLS L+ E+ L+
Sbjct: 598 LSGISLDEPYLQHRLSILMKEEKKSLQ 624
>ref|XP_006572940.1| PREDICTED: probable RNA-dependent RNA polymerase 5-like [Glycine max]
Length = 988
Score = 186 bits (473), Expect = 4e-45
Identities = 103/207 (49%), Positives = 136/207 (65%)
Frame = +2
Query: 2 GFISEDLALKCPQDLGRAKYIGDEDFQRFRDYIEPQNESIAEQREEGARNKEPPLLMQCR 181
GFIS DLAL CP ++ + + + Q + +E ++ S A E EPPLL+QCR
Sbjct: 393 GFISRDLALLCPNNVYKGSNLENNCIQEINNLVELEDMSNAMGEAEQLSTHEPPLLIQCR 452
Query: 182 LFKDGVAVKGTLLVNKKLPPGTIQIRTSMVKVEKDVMCPVTKTFNSLEVVAVSNKPKRNY 361
LF G A+KGTLLVN+KLPP TIQ+R SM+KVEKD + ++ NSLEVV SNKPKR Y
Sbjct: 453 LFHMGHAIKGTLLVNRKLPPRTIQVRPSMIKVEKDPSVHM-QSINSLEVVTTSNKPKRGY 511
Query: 362 LSRYLIALLNYGGVDGKIFLGLLNSALEETKMVYSNKRAALKVAIINGEVDDDSTTARMI 541
LS++LIALL++GGV + F+ LL S +E+ VYSNKR+AL+ +I GE D+ A MI
Sbjct: 512 LSKHLIALLSFGGVPNEFFMDLLRSNMEDANHVYSNKRSALRASINCGE-KDEYNAAEMI 570
Query: 542 SSGEPLSEPHLQDRLSKLVNLERTKLK 622
G PL EP L+ LS+ E+ KL+
Sbjct: 571 LCGIPLDEPFLKHHLSRFAREEKKKLR 597
>ref|XP_002280491.1| PREDICTED: probable RNA-dependent RNA polymerase 5-like [Vitis
vinifera]
Length = 943
Score = 186 bits (472), Expect = 5e-45
Identities = 106/207 (51%), Positives = 136/207 (65%)
Frame = +2
Query: 2 GFISEDLALKCPQDLGRAKYIGDEDFQRFRDYIEPQNESIAEQREEGARNKEPPLLMQCR 181
GFISEDLAL+CP +L R KY+ + N + + R PLL+QCR
Sbjct: 369 GFISEDLALRCPNNLCRGKYMNNG------------NSDVCDSRY--------PLLIQCR 408
Query: 182 LFKDGVAVKGTLLVNKKLPPGTIQIRTSMVKVEKDVMCPVTKTFNSLEVVAVSNKPKRNY 361
LF +G AVKGTLL+N+KLPP TIQIR SM+KVE D T+T NS+E+ SN+P+R+Y
Sbjct: 409 LFNNGCAVKGTLLLNRKLPPRTIQIRPSMIKVETDPKLSDTQTVNSVEINGTSNQPRRSY 468
Query: 362 LSRYLIALLNYGGVDGKIFLGLLNSALEETKMVYSNKRAALKVAIINGEVDDDSTTARMI 541
LS+YLIALL+YGGV + F+ LL ALE+ V S+KRAAL+V++ GE+ DDS RMI
Sbjct: 469 LSKYLIALLSYGGVPNEYFMNLLKDALEDAPSVQSSKRAALRVSLRFGEM-DDSIVTRMI 527
Query: 542 SSGEPLSEPHLQDRLSKLVNLERTKLK 622
SG P+ EP L LS +VN ER L+
Sbjct: 528 LSGIPIDEPFLHHCLSFMVNEERKGLR 554
>ref|XP_006408908.1| hypothetical protein EUTSA_v10001897mg [Eutrema salsugineum]
gi|557110064|gb|ESQ50361.1| hypothetical protein
EUTSA_v10001897mg [Eutrema salsugineum]
Length = 988
Score = 184 bits (467), Expect = 2e-44
Identities = 102/207 (49%), Positives = 135/207 (65%)
Frame = +2
Query: 2 GFISEDLALKCPQDLGRAKYIGDEDFQRFRDYIEPQNESIAEQREEGARNKEPPLLMQCR 181
G+ISEDLA CP ++ + K + ++ Q + ++PPLL+Q R
Sbjct: 415 GYISEDLARMCPVNIFKGKCLSKKNIQE-------------------SCGQDPPLLIQFR 455
Query: 182 LFKDGVAVKGTLLVNKKLPPGTIQIRTSMVKVEKDVMCPVTKTFNSLEVVAVSNKPKRNY 361
+F DG AVKGT L+NKKLP T+Q+R SM+KV KD TFNSLEVV SN PKR
Sbjct: 456 MFYDGNAVKGTFLLNKKLPDRTVQVRPSMIKVSKDRALSNFSTFNSLEVVTTSNPPKRTK 515
Query: 362 LSRYLIALLNYGGVDGKIFLGLLNSALEETKMVYSNKRAALKVAIINGEVDDDSTTARMI 541
LSR L+ALL+YGGV + FL LL + +EETK +++NKRAALK A+ +G++DD + A+MI
Sbjct: 516 LSRNLVALLSYGGVPNEFFLDLLLNTMEETKTIFNNKRAALKAALNHGDMDDQN-AAQMI 574
Query: 542 SSGEPLSEPHLQDRLSKLVNLERTKLK 622
G PL EPHL+DRLS L N+E+ LK
Sbjct: 575 LVGIPLDEPHLKDRLSILSNIEKNDLK 601
>ref|XP_006408907.1| hypothetical protein EUTSA_v10001896mg [Eutrema salsugineum]
gi|557110063|gb|ESQ50360.1| hypothetical protein
EUTSA_v10001896mg [Eutrema salsugineum]
Length = 988
Score = 184 bits (467), Expect = 2e-44
Identities = 103/207 (49%), Positives = 132/207 (63%)
Frame = +2
Query: 2 GFISEDLALKCPQDLGRAKYIGDEDFQRFRDYIEPQNESIAEQREEGARNKEPPLLMQCR 181
G+ISEDLA CP D+ + K IG ++ Q +E Q G KEPPLL+Q R
Sbjct: 388 GYISEDLARMCPTDIFKGKCIGIDNIQSKIPNVEAQ----------GTCGKEPPLLIQFR 437
Query: 182 LFKDGVAVKGTLLVNKKLPPGTIQIRTSMVKVEKDVMCPVTKTFNSLEVVAVSNKPKRNY 361
+F DG AVKGT L+NKKLP T+Q+R SM+KV D TFNSLEVV SN P R
Sbjct: 438 MFYDGYAVKGTFLLNKKLPDRTVQVRPSMIKVYNDQTLSNFSTFNSLEVVNTSNPPNRTK 497
Query: 362 LSRYLIALLNYGGVDGKIFLGLLNSALEETKMVYSNKRAALKVAIINGEVDDDSTTARMI 541
LSR L+ALL+YGGV FL +L + LE +K ++ NKR+ALK A+ G++DD + A+MI
Sbjct: 498 LSRNLVALLSYGGVPNDFFLDILRNTLENSKTIFQNKRSALKAALNYGDMDDQN-AAQMI 556
Query: 542 SSGEPLSEPHLQDRLSKLVNLERTKLK 622
G PL EPHL+D LS L++ E+ LK
Sbjct: 557 LVGIPLDEPHLKDHLSILLHTEKNDLK 583
>ref|XP_004135802.1| PREDICTED: probable RNA-dependent RNA polymerase 5-like [Cucumis
sativus]
Length = 1056
Score = 183 bits (465), Expect = 3e-44
Identities = 111/211 (52%), Positives = 147/211 (69%), Gaps = 4/211 (1%)
Frame = +2
Query: 2 GFISEDLALKCPQDL--GRAKYIGDED--FQRFRDYIEPQNESIAEQREEGARNKEPPLL 169
GFISEDLAL+CP ++ G+AK+ D +QR + QN+++ + G +EPPLL
Sbjct: 460 GFISEDLALECPMNVFKGQAKHDADLKAIWQRIPAFEGFQNKTL-QLTLPGLELREPPLL 518
Query: 170 MQCRLFKDGVAVKGTLLVNKKLPPGTIQIRTSMVKVEKDVMCPVTKTFNSLEVVAVSNKP 349
+Q RLF +G+AVKGT L+NK+LPP TIQIR SM+KVE D +T NSLE+V SN P
Sbjct: 519 IQFRLFYNGLAVKGTFLLNKQLPPRTIQIRDSMIKVEIDPDLENFETENSLELVGTSNPP 578
Query: 350 KRNYLSRYLIALLNYGGVDGKIFLGLLNSALEETKMVYSNKRAALKVAIINGEVDDDSTT 529
KR +LSR LIALLNYGGV + F+ +L AL++ + V+S+KRAAL+V+I NGE+ DD
Sbjct: 579 KRTFLSRNLIALLNYGGVPREYFMNILVDALKDVQGVFSSKRAALRVSINNGEM-DDFLV 637
Query: 530 ARMISSGEPLSEPHLQDRLSKLVNLERTKLK 622
ARMI +G PL E +LQ RLS L+ E+ LK
Sbjct: 638 ARMILAGIPLDESYLQYRLSVLLKEEKKSLK 668
>ref|XP_006353487.1| PREDICTED: probable RNA-dependent RNA polymerase 3-like [Solanum
tuberosum]
Length = 1110
Score = 183 bits (464), Expect = 4e-44
Identities = 106/207 (51%), Positives = 138/207 (66%)
Frame = +2
Query: 2 GFISEDLALKCPQDLGRAKYIGDEDFQRFRDYIEPQNESIAEQREEGARNKEPPLLMQCR 181
G+ISEDLA KCPQD K+ + +R+ + ++ E+ +E E ++ EPPLLMQCR
Sbjct: 504 GYISEDLARKCPQDFFNVKH-RCANLERYTNGVK-LGENSSELGEAEFQSGEPPLLMQCR 561
Query: 182 LFKDGVAVKGTLLVNKKLPPGTIQIRTSMVKVEKDVMCPVTKTFNSLEVVAVSNKPKRNY 361
LF +G+AVKGTLLVN+KLP TIQIR SM+KVE D + FNSLE+ S KP+ Y
Sbjct: 562 LFYNGLAVKGTLLVNRKLPRRTIQIRPSMIKVEADPRLSRAQMFNSLEINTPSLKPRNTY 621
Query: 362 LSRYLIALLNYGGVDGKIFLGLLNSALEETKMVYSNKRAALKVAIINGEVDDDSTTARMI 541
LSR LIALL YGGV + F +LN+ LEET+ +YS++ ALKVA+ + + DD ST MI
Sbjct: 622 LSRTLIALLTYGGVPVEYFYDILNNTLEETQRLYSDEVTALKVAVNHRDRDDASTATSMI 681
Query: 542 SSGEPLSEPHLQDRLSKLVNLERTKLK 622
+G PL+EP+L LS L ER LK
Sbjct: 682 MAGVPLTEPYLWCCLSSLAKEERNGLK 708
>emb|CBI28010.3| unnamed protein product [Vitis vinifera]
Length = 929
Score = 183 bits (464), Expect = 4e-44
Identities = 104/207 (50%), Positives = 132/207 (63%)
Frame = +2
Query: 2 GFISEDLALKCPQDLGRAKYIGDEDFQRFRDYIEPQNESIAEQREEGARNKEPPLLMQCR 181
GFISEDLAL+CP +L R KY+ + PLL+QCR
Sbjct: 361 GFISEDLALRCPNNLCRGKYMNN--------------------------GNSDPLLIQCR 394
Query: 182 LFKDGVAVKGTLLVNKKLPPGTIQIRTSMVKVEKDVMCPVTKTFNSLEVVAVSNKPKRNY 361
LF +G AVKGTLL+N+KLPP TIQIR SM+KVE D T+T NS+E+ SN+P+R+Y
Sbjct: 395 LFNNGCAVKGTLLLNRKLPPRTIQIRPSMIKVETDPKLSDTQTVNSVEINGTSNQPRRSY 454
Query: 362 LSRYLIALLNYGGVDGKIFLGLLNSALEETKMVYSNKRAALKVAIINGEVDDDSTTARMI 541
LS+YLIALL+YGGV + F+ LL ALE+ V S+KRAAL+V++ GE+ DDS RMI
Sbjct: 455 LSKYLIALLSYGGVPNEYFMNLLKDALEDAPSVQSSKRAALRVSLRFGEM-DDSIVTRMI 513
Query: 542 SSGEPLSEPHLQDRLSKLVNLERTKLK 622
SG P+ EP L LS +VN ER L+
Sbjct: 514 LSGIPIDEPFLHHCLSFMVNEERKGLR 540
>emb|CAN71520.1| hypothetical protein VITISV_042316 [Vitis vinifera]
Length = 1202
Score = 183 bits (464), Expect = 4e-44
Identities = 105/207 (50%), Positives = 137/207 (66%)
Frame = +2
Query: 2 GFISEDLALKCPQDLGRAKYIGDEDFQRFRDYIEPQNESIAEQREEGARNKEPPLLMQCR 181
GFISEDLAL+CP +L R KY+ + + R +E + + +E R EPPLL+QCR
Sbjct: 672 GFISEDLALRCPNNLCRGKYMXNGNSDRLVGNVELEGK-FSELRCLETHTWEPPLLIQCR 730
Query: 182 LFKDGVAVKGTLLVNKKLPPGTIQIRTSMVKVEKDVMCPVTKTFNSLEVVAVSNKPKRNY 361
LF +G AVKGTLL+N+KLPP TIQIR SM+KVE D T+T NS+E+ SN+P+R+Y
Sbjct: 731 LFNNGCAVKGTLLLNRKLPPRTIQIRPSMIKVETDPKLSDTQTVNSVEINGTSNQPRRSY 790
Query: 362 LSRYLIALLNYGGVDGKIFLGLLNSALEETKMVYSNKRAALKVAIINGEVDDDSTTARMI 541
LS+YLIALL+YGGV + F+ LL ALE+ V S +++ E+ DDS RMI
Sbjct: 791 LSKYLIALLSYGGVPNEYFMNLLKDALEDAPSVQS-------ISLRFDEM-DDSIVTRMI 842
Query: 542 SSGEPLSEPHLQDRLSKLVNLERTKLK 622
SG P+ EP LQ RLS +VN ER L+
Sbjct: 843 LSGIPIDEPFLQHRLSFMVNEERKGLR 869
>ref|XP_004251631.1| PREDICTED: probable RNA-dependent RNA polymerase 3-like [Solanum
lycopersicum]
Length = 759
Score = 181 bits (459), Expect = 2e-43
Identities = 106/207 (51%), Positives = 136/207 (65%)
Frame = +2
Query: 2 GFISEDLALKCPQDLGRAKYIGDEDFQRFRDYIEPQNESIAEQREEGARNKEPPLLMQCR 181
G+ISEDLA KCPQD K+ + R+ + ++ E+ +E E ++ EPPLLMQCR
Sbjct: 448 GYISEDLARKCPQDFFNVKH-KCANLVRYANGVK-LGENSSELGEAEFQSGEPPLLMQCR 505
Query: 182 LFKDGVAVKGTLLVNKKLPPGTIQIRTSMVKVEKDVMCPVTKTFNSLEVVAVSNKPKRNY 361
LF +G+AVKGTLLVN+KLP TIQIR SM+KVE D FNSLE+ S KP+ Y
Sbjct: 506 LFYNGLAVKGTLLVNRKLPQRTIQIRPSMIKVEADPRLSRAHMFNSLEINTPSLKPRNTY 565
Query: 362 LSRYLIALLNYGGVDGKIFLGLLNSALEETKMVYSNKRAALKVAIINGEVDDDSTTARMI 541
LSR LIALL YGGV + F +LN+ LEET+ +YS++ ALKVA+ + + DD ST MI
Sbjct: 566 LSRTLIALLTYGGVPVEYFYDILNNTLEETQRLYSDEVTALKVAVNHRDRDDASTATSMI 625
Query: 542 SSGEPLSEPHLQDRLSKLVNLERTKLK 622
+G PL+EP+L LS L ER LK
Sbjct: 626 MAGVPLTEPYLWCCLSSLAKEERNGLK 652
>ref|XP_004288887.1| PREDICTED: probable RNA-dependent RNA polymerase 3-like [Fragaria
vesca subsp. vesca]
Length = 1405
Score = 178 bits (451), Expect = 1e-42
Identities = 102/208 (49%), Positives = 132/208 (63%)
Frame = +2
Query: 2 GFISEDLALKCPQDLGRAKYIGDEDFQRFRDYIEPQNESIAEQREEGARNKEPPLLMQCR 181
GFISEDLAL CP+ + ++I DE + D P + G R +EPPLL+QCR
Sbjct: 816 GFISEDLALLCPKIEAKGQWISDEHMKGLPD---PDELDDTGKNRAGLRTEEPPLLIQCR 872
Query: 182 LFKDGVAVKGTLLVNKKLPPGTIQIRTSMVKVEKDVMCPVTKTFNSLEVVAVSNKPKRNY 361
LF +G A KGTLLVNKKL P IQIR SM+KV+ D + +T NSLE+V S P+ +
Sbjct: 873 LFHNGSASKGTLLVNKKLQPNRIQIRPSMLKVKTDPVISNNQTLNSLEIVGTSTPPRNTH 932
Query: 362 LSRYLIALLNYGGVDGKIFLGLLNSALEETKMVYSNKRAALKVAIINGEVDDDSTTARMI 541
LSR LIALL +GGV + F+ +LN ALE++ V+ KRAALKVA GE+DD+ MI
Sbjct: 933 LSRILIALLVHGGVPEEFFMQILNKALEDSHGVFCKKRAALKVAEKYGEMDDNFLGRLMI 992
Query: 542 SSGEPLSEPHLQDRLSKLVNLERTKLKE 625
S G PL E +L+ RLS L+ E L++
Sbjct: 993 SFGIPLEESYLRYRLSVLMKEENNSLRK 1020
>ref|XP_004513037.1| PREDICTED: probable RNA-dependent RNA polymerase 5-like [Cicer
arietinum]
Length = 997
Score = 176 bits (446), Expect = 5e-42
Identities = 99/207 (47%), Positives = 134/207 (64%)
Frame = +2
Query: 2 GFISEDLALKCPQDLGRAKYIGDEDFQRFRDYIEPQNESIAEQREEGARNKEPPLLMQCR 181
GFISEDLA+ CP ++ + + + + + ++ ++ S A E +PPLL+QCR
Sbjct: 403 GFISEDLAVLCPNNVLKGSNLKNTHIKEISNLVKLEDMSKA-MGEAALSKHQPPLLIQCR 461
Query: 182 LFKDGVAVKGTLLVNKKLPPGTIQIRTSMVKVEKDVMCPVTKTFNSLEVVAVSNKPKRNY 361
LF G A+KGTLLVNKKL P TIQ+R SM+KV D ++ NS+EVV S+KP R Y
Sbjct: 462 LFHMGCAMKGTLLVNKKLSPSTIQVRPSMIKVMTDPSLSNIQSLNSMEVVNTSHKPNRAY 521
Query: 362 LSRYLIALLNYGGVDGKIFLGLLNSALEETKMVYSNKRAALKVAIINGEVDDDSTTARMI 541
LS+YLIALL+YG V + F+ +L S LE+ +Y+NKRAAL+ ++ E+ DD A MI
Sbjct: 522 LSKYLIALLSYGRVPNEFFMDVLKSNLEDAGHIYTNKRAALRASLNYAEM-DDFNAAGMI 580
Query: 542 SSGEPLSEPHLQDRLSKLVNLERTKLK 622
G PL EP LQ LSKLV LE+ KL+
Sbjct: 581 LCGIPLDEPFLQHYLSKLVKLEKNKLR 607
>ref|XP_006380470.1| hypothetical protein POPTR_0007s06560g [Populus trichocarpa]
gi|550334280|gb|ERP58267.1| hypothetical protein
POPTR_0007s06560g [Populus trichocarpa]
Length = 877
Score = 174 bits (442), Expect = 1e-41
Identities = 101/207 (48%), Positives = 137/207 (66%)
Frame = +2
Query: 2 GFISEDLALKCPQDLGRAKYIGDEDFQRFRDYIEPQNESIAEQREEGARNKEPPLLMQCR 181
GFIS DLALKCP++ + + + +R + E + EQ E RN +PPLL+Q R
Sbjct: 288 GFISHDLALKCPKNQFKGTCLRASNIERLNVHNE-----VMEQYPE-CRNGDPPLLIQFR 341
Query: 182 LFKDGVAVKGTLLVNKKLPPGTIQIRTSMVKVEKDVMCPVTKTFNSLEVVAVSNKPKRNY 361
LF +G AVKGT LVNKKL T+ IR SM+KVE D T + NSLE+V S++PK+ +
Sbjct: 342 LFNNGRAVKGTFLVNKKLTHQTLHIRPSMIKVETDPKLSSTFSKNSLEIVGTSSRPKKTF 401
Query: 362 LSRYLIALLNYGGVDGKIFLGLLNSALEETKMVYSNKRAALKVAIINGEVDDDSTTARMI 541
LS+ LIALL+YGGV + F+G++N+ALE+ + SNK AAL+VA+ G++ DD+ A MI
Sbjct: 402 LSKNLIALLSYGGVPEEFFMGIVNNALEDAHGILSNKNAALRVALNYGDM-DDNIVATMI 460
Query: 542 SSGEPLSEPHLQDRLSKLVNLERTKLK 622
G PL EP+LQ RLS L+ E+ LK
Sbjct: 461 GCGIPLEEPYLQCRLSILMKEEKKSLK 487
>ref|XP_006380469.1| hypothetical protein POPTR_0007s06560g [Populus trichocarpa]
gi|550334279|gb|ERP58266.1| hypothetical protein
POPTR_0007s06560g [Populus trichocarpa]
Length = 899
Score = 174 bits (442), Expect = 1e-41
Identities = 101/207 (48%), Positives = 137/207 (66%)
Frame = +2
Query: 2 GFISEDLALKCPQDLGRAKYIGDEDFQRFRDYIEPQNESIAEQREEGARNKEPPLLMQCR 181
GFIS DLALKCP++ + + + +R + E + EQ E RN +PPLL+Q R
Sbjct: 310 GFISHDLALKCPKNQFKGTCLRASNIERLNVHNE-----VMEQYPE-CRNGDPPLLIQFR 363
Query: 182 LFKDGVAVKGTLLVNKKLPPGTIQIRTSMVKVEKDVMCPVTKTFNSLEVVAVSNKPKRNY 361
LF +G AVKGT LVNKKL T+ IR SM+KVE D T + NSLE+V S++PK+ +
Sbjct: 364 LFNNGRAVKGTFLVNKKLTHQTLHIRPSMIKVETDPKLSSTFSKNSLEIVGTSSRPKKTF 423
Query: 362 LSRYLIALLNYGGVDGKIFLGLLNSALEETKMVYSNKRAALKVAIINGEVDDDSTTARMI 541
LS+ LIALL+YGGV + F+G++N+ALE+ + SNK AAL+VA+ G++ DD+ A MI
Sbjct: 424 LSKNLIALLSYGGVPEEFFMGIVNNALEDAHGILSNKNAALRVALNYGDM-DDNIVATMI 482
Query: 542 SSGEPLSEPHLQDRLSKLVNLERTKLK 622
G PL EP+LQ RLS L+ E+ LK
Sbjct: 483 GCGIPLEEPYLQCRLSILMKEEKKSLK 509
>ref|XP_002883963.1| RNA-dependent RNA polymerase family protein [Arabidopsis lyrata
subsp. lyrata] gi|297329803|gb|EFH60222.1| RNA-dependent
RNA polymerase family protein [Arabidopsis lyrata subsp.
lyrata]
Length = 981
Score = 174 bits (441), Expect = 2e-41
Identities = 97/207 (46%), Positives = 131/207 (63%)
Frame = +2
Query: 2 GFISEDLALKCPQDLGRAKYIGDEDFQRFRDYIEPQNESIAEQREEGARNKEPPLLMQCR 181
G+ISEDLA CP ++ + K + E+ Q A N++PPLL+Q R
Sbjct: 407 GYISEDLARMCPLNIFKGKCLRSENIQE-------------------ACNQDPPLLIQFR 447
Query: 182 LFKDGVAVKGTLLVNKKLPPGTIQIRTSMVKVEKDVMCPVTKTFNSLEVVAVSNKPKRNY 361
+F DG AVKGT L+NKKL P T+Q+R SM+KV KD TFN+LEVV SN P+R
Sbjct: 448 MFYDGYAVKGTFLLNKKLCPRTVQVRPSMIKVSKDPSLSNFSTFNALEVVTTSNPPRRTK 507
Query: 362 LSRYLIALLNYGGVDGKIFLGLLNSALEETKMVYSNKRAALKVAIINGEVDDDSTTARMI 541
LS+ L+ALL+YGG+ + FL +L + LEE+K ++ NK AAL VA+ GE+DD + A+MI
Sbjct: 508 LSKNLVALLSYGGIPNEFFLDILLNTLEESKSIFYNKHAALNVALNYGEMDDQN-AAQMI 566
Query: 542 SSGEPLSEPHLQDRLSKLVNLERTKLK 622
G PL EPHL++ LS L+ E+ LK
Sbjct: 567 LVGIPLDEPHLKNHLSILLKTEKNDLK 593
>ref|NP_179581.2| probable RNA-dependent RNA polymerase 3 [Arabidopsis thaliana]
gi|322967566|sp|O82190.2|RDR3_ARATH RecName:
Full=Probable RNA-dependent RNA polymerase 3;
Short=AtRDRP3; AltName: Full=RNA-directed RNA polymerase
3 gi|330251848|gb|AEC06942.1| probable RNA-dependent RNA
polymerase 3 [Arabidopsis thaliana]
Length = 992
Score = 172 bits (436), Expect = 7e-41
Identities = 100/207 (48%), Positives = 128/207 (61%)
Frame = +2
Query: 2 GFISEDLALKCPQDLGRAKYIGDEDFQRFRDYIEPQNESIAEQREEGARNKEPPLLMQCR 181
G+ISEDLA CP ++ + K + + Q E Q G +EPPLL+Q R
Sbjct: 407 GYISEDLARMCPVNIFKGKSMRSNNIQSKNLNFEGQ----------GPCGQEPPLLIQFR 456
Query: 182 LFKDGVAVKGTLLVNKKLPPGTIQIRTSMVKVEKDVMCPVTKTFNSLEVVAVSNKPKRNY 361
+F +G AVKGT L NKKLPP T+Q+R SM+KV +D TFNSLEVV SN P++
Sbjct: 457 IFYNGYAVKGTFLTNKKLPPRTVQVRPSMIKVYEDRTLSNLSTFNSLEVVTTSNPPRKAR 516
Query: 362 LSRYLIALLNYGGVDGKIFLGLLNSALEETKMVYSNKRAALKVAIINGEVDDDSTTARMI 541
LSR L+ALL+YGGV FL +L + LEE+K ++ ++RAA K AI G DD TA MI
Sbjct: 517 LSRNLVALLSYGGVPNDFFLNILRNTLEESKTIFYSERAAFKAAINYG---DDQYTADMI 573
Query: 542 SSGEPLSEPHLQDRLSKLVNLERTKLK 622
G PL EP+L+DRLS L+ ER LK
Sbjct: 574 LVGIPLDEPYLKDRLSYLLKTERNALK 600
>gb|AAC62125.1| hypothetical protein [Arabidopsis thaliana]
Length = 966
Score = 172 bits (436), Expect = 7e-41
Identities = 100/207 (48%), Positives = 128/207 (61%)
Frame = +2
Query: 2 GFISEDLALKCPQDLGRAKYIGDEDFQRFRDYIEPQNESIAEQREEGARNKEPPLLMQCR 181
G+ISEDLA CP ++ + K + + Q E Q G +EPPLL+Q R
Sbjct: 381 GYISEDLARMCPVNIFKGKSMRSNNIQSKNLNFEGQ----------GPCGQEPPLLIQFR 430
Query: 182 LFKDGVAVKGTLLVNKKLPPGTIQIRTSMVKVEKDVMCPVTKTFNSLEVVAVSNKPKRNY 361
+F +G AVKGT L NKKLPP T+Q+R SM+KV +D TFNSLEVV SN P++
Sbjct: 431 IFYNGYAVKGTFLTNKKLPPRTVQVRPSMIKVYEDRTLSNLSTFNSLEVVTTSNPPRKAR 490
Query: 362 LSRYLIALLNYGGVDGKIFLGLLNSALEETKMVYSNKRAALKVAIINGEVDDDSTTARMI 541
LSR L+ALL+YGGV FL +L + LEE+K ++ ++RAA K AI G DD TA MI
Sbjct: 491 LSRNLVALLSYGGVPNDFFLNILRNTLEESKTIFYSERAAFKAAINYG---DDQYTADMI 547
Query: 542 SSGEPLSEPHLQDRLSKLVNLERTKLK 622
G PL EP+L+DRLS L+ ER LK
Sbjct: 548 LVGIPLDEPYLKDRLSYLLKTERNALK 574