BLASTX nr result

ID: Catharanthus22_contig00024270 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Catharanthus22_contig00024270
         (338 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_006376461.1| hypothetical protein POPTR_0013s132502g, par...    54   3e-07
ref|XP_006376462.1| hypothetical protein POPTR_0013s132502g, par...    54   3e-07
emb|CBI24131.3| unnamed protein product [Vitis vinifera]               50   4e-07
ref|XP_006590810.1| PREDICTED: general transcription factor 3C p...    49   1e-05

>ref|XP_006376461.1| hypothetical protein POPTR_0013s132502g, partial [Populus
           trichocarpa] gi|550325737|gb|ERP54258.1| hypothetical
           protein POPTR_0013s132502g, partial [Populus
           trichocarpa]
          Length = 688

 Score = 53.5 bits (127), Expect(2) = 3e-07
 Identities = 30/50 (60%), Positives = 35/50 (70%), Gaps = 3/50 (6%)
 Frame = -2

Query: 313 NIFCGLRPLASKSDLLNAYRARKLLEKKAILKG---TLGVDSGSDYSDDE 173
           ++F  +RPLASKSDLL A RARKLL+KK   K      G+D  SDYSDDE
Sbjct: 345 DVFGEVRPLASKSDLLRACRARKLLQKKEEQKAADKAAGIDLPSDYSDDE 394



 Score = 26.6 bits (57), Expect(2) = 3e-07
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -3

Query: 60  KVHPLPSFLKNVEHHVLIVD 1
           +V PL  FLK+  HH LI+D
Sbjct: 400 RVSPLHDFLKDEAHHDLIID 419


>ref|XP_006376462.1| hypothetical protein POPTR_0013s132502g, partial [Populus
           trichocarpa] gi|550325738|gb|ERP54259.1| hypothetical
           protein POPTR_0013s132502g, partial [Populus
           trichocarpa]
          Length = 500

 Score = 53.5 bits (127), Expect(2) = 3e-07
 Identities = 30/50 (60%), Positives = 35/50 (70%), Gaps = 3/50 (6%)
 Frame = -2

Query: 313 NIFCGLRPLASKSDLLNAYRARKLLEKKAILKG---TLGVDSGSDYSDDE 173
           ++F  +RPLASKSDLL A RARKLL+KK   K      G+D  SDYSDDE
Sbjct: 345 DVFGEVRPLASKSDLLRACRARKLLQKKEEQKAADKAAGIDLPSDYSDDE 394



 Score = 26.6 bits (57), Expect(2) = 3e-07
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -3

Query: 60  KVHPLPSFLKNVEHHVLIVD 1
           +V PL  FLK+  HH LI+D
Sbjct: 400 RVSPLHDFLKDEAHHDLIID 419


>emb|CBI24131.3| unnamed protein product [Vitis vinifera]
          Length = 915

 Score = 50.1 bits (118), Expect(2) = 4e-07
 Identities = 30/56 (53%), Positives = 34/56 (60%), Gaps = 7/56 (12%)
 Frame = -2

Query: 313 NIFCGLRPLASKSDLLNAYRARKLLEKKAILKG-------TLGVDSGSDYSDDEFP 167
           N+F G RP+AS SDL  A RA+KLL+KKA  K          GVD  SD SDDE P
Sbjct: 566 NVFHGFRPMASTSDLSKASRAKKLLQKKATRKEERKAAAMAAGVDWYSDESDDESP 621



 Score = 29.3 bits (64), Expect(2) = 4e-07
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = -3

Query: 72  QQNAKVHPLPSFLKNVEHHVLIVD 1
           +Q  +  PLP+ LK+ EHH LI+D
Sbjct: 622 EQKLREPPLPNLLKDEEHHHLILD 645


>ref|XP_006590810.1| PREDICTED: general transcription factor 3C polypeptide 3-like
           [Glycine max]
          Length = 914

 Score = 48.9 bits (115), Expect(2) = 1e-05
 Identities = 29/54 (53%), Positives = 35/54 (64%), Gaps = 7/54 (12%)
 Frame = -2

Query: 313 NIFCGLRPLASKSDLLNAYRARKLLEKKAILKG-------TLGVDSGSDYSDDE 173
           N+F G RP+A+ SDLL A RA+KLL+KKAI K          G+D  SD SDDE
Sbjct: 566 NVFRGFRPVAAPSDLLKASRAKKLLQKKAIEKEKRKAEALASGIDWLSDDSDDE 619



 Score = 25.8 bits (55), Expect(2) = 1e-05
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -3

Query: 72  QQNAKVHPLPSFLKNVEHHVLIVD 1
           Q+  +  PL + LK+ EHH LI+D
Sbjct: 621 QKENREPPLCNLLKDEEHHQLIID 644


Top