BLASTX nr result
ID: Catharanthus22_contig00022621
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Catharanthus22_contig00022621
(1549 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_004509900.1| PREDICTED: genome polyprotein-like [Cicer ar... 85 9e-35
ref|XP_006419165.1| hypothetical protein EUTSA_v100029341mg, par... 96 1e-31
ref|XP_006393720.1| hypothetical protein EUTSA_v10012231mg, part... 80 1e-28
ref|XP_002317406.1| predicted protein [Populus trichocarpa] 62 2e-28
ref|XP_004509642.1| PREDICTED: genome polyprotein-like [Cicer ar... 78 3e-28
sp|Q6XKE6.1|POLG_PVCV2 RecName: Full=Genome polyprotein; Contain... 102 2e-26
ref|NP_127504.1| ORF I polyprotein [Petunia vein clearing virus]... 102 2e-26
gb|AAO67369.1| polyprotein 1 [Petunia vein clearing virus] 102 2e-26
gb|AAD37341.1|AF140604_5 reverse transcriptase [Cauliflower mosa... 69 1e-25
ref|XP_006376643.1| hypothetical protein POPTR_0012s01890g [Popu... 89 3e-25
gb|AGT42056.1| reverse transcriptase [Cauliflower mosaic virus] ... 67 5e-25
sp|Q02964.1|POL_CAMVE RecName: Full=Enzymatic polyprotein; Inclu... 67 6e-25
sp|P03555.1|POL_CAMVC RecName: Full=Enzymatic polyprotein; Inclu... 67 6e-25
gb|AFI61742.1| reverse transcriptase [Cauliflower mosaic virus] 67 6e-25
gb|AGT42189.1| reverse transcriptase [Cauliflower mosaic virus] 67 6e-25
gb|AGT42175.1| reverse transcriptase [Cauliflower mosaic virus] 67 6e-25
gb|AGT42147.1| reverse transcriptase [Cauliflower mosaic virus] ... 67 6e-25
gb|AGT42140.1| reverse transcriptase [Cauliflower mosaic virus] 67 6e-25
gb|AGT42112.1| reverse transcriptase [Cauliflower mosaic virus] 67 6e-25
gb|AGT42098.1| reverse transcriptase [Cauliflower mosaic virus] ... 67 6e-25
>ref|XP_004509900.1| PREDICTED: genome polyprotein-like [Cicer arietinum]
Length = 181
Score = 84.7 bits (208), Expect(3) = 9e-35
Identities = 39/79 (49%), Positives = 57/79 (72%)
Frame = -2
Query: 1341 MVSQRKMVLAQQSVSLLGMEFVQGHYKPGTYIAEELLKFPEENLTVKQVQRFLGIVNYL* 1162
M+S++K LAQ + LG+ F QG ++P +IA+ELL FP+ENLT+KQ+Q+FLGI+NY+
Sbjct: 1 MLSKKKRQLAQTKIDFLGIHFSQGKFQPQPHIAQELLNFPDENLTIKQIQQFLGIINYIR 60
Query: 1161 EFIPAQLKTFMPLLKCLAR 1105
FIP K PL + L++
Sbjct: 61 NFIPKLAKYTSPLSQLLSK 79
Score = 58.5 bits (140), Expect(3) = 9e-35
Identities = 25/44 (56%), Positives = 33/44 (75%)
Frame = -3
Query: 938 KDYCGFASG*FKDLEIHYHSTFKKILAVKYAIKKFNYHLIGHHF 807
K YCG ASG FK+ E HYH+T+K+ LAVK I+ F++HL G+ F
Sbjct: 136 KHYCGHASGQFKEAEKHYHTTYKEALAVKLGIQNFDFHLRGYQF 179
Score = 53.1 bits (126), Expect(3) = 9e-35
Identities = 28/64 (43%), Positives = 38/64 (59%)
Frame = -1
Query: 1126 LTKMLSKDPPPWTQAQTQAILT*KSRLRNIPNLQTLSARKRILQTDATDKY*GATLIEDL 947
L+++LSK+P PW T+A+ K P L+ KRILQTDA+D Y G LIE++
Sbjct: 73 LSQLLSKNPSPWKPKHTEAVKALKRIAHTPPALKIPGNGKRILQTDASDHYWGTILIEEI 132
Query: 946 DGKK 935
G K
Sbjct: 133 KGIK 136
>ref|XP_006419165.1| hypothetical protein EUTSA_v100029341mg, partial [Eutrema
salsugineum] gi|557097093|gb|ESQ37601.1| hypothetical
protein EUTSA_v100029341mg, partial [Eutrema salsugineum]
Length = 735
Score = 95.9 bits (237), Expect(3) = 1e-31
Identities = 45/104 (43%), Positives = 70/104 (67%), Gaps = 3/104 (2%)
Frame = -2
Query: 1407 LVSTTYPEHLQLL---SNVIKEYGIMVSQRKMVLAQQSVSLLGMEFVQGHYKPGTYIAEE 1237
L+ T EH++ L +++EYGIM+S RKM++AQ ++ LGM+ +G + P ++A
Sbjct: 574 LLHTAEEEHIRSLRQFQGIVEEYGIMLSARKMIIAQPNIDFLGMQITEGRFTPQAHLATA 633
Query: 1236 LLKFPEENLTVKQVQRFLGIVNYL*EFIPAQLKTFMPLLKCLAR 1105
LL FP+ENLT +QVQ+FLG++NY+ +FIP + PL K L +
Sbjct: 634 LLDFPDENLTRRQVQQFLGVINYISDFIPQLSQITRPLQKMLTK 677
Score = 50.4 bits (119), Expect(3) = 1e-31
Identities = 24/49 (48%), Positives = 33/49 (67%)
Frame = -1
Query: 1126 LTKMLSKDPPPWTQAQTQAILT*KSRLRNIPNLQTLSARKRILQTDATD 980
L KML+K+PP W QT+A+ + K ++ +P L+ S RILQTDATD
Sbjct: 671 LQKMLTKNPPTWATKQTEAVKSLKREIQKLPPLKIPSTGLRILQTDATD 719
Score = 39.7 bits (91), Expect(3) = 1e-31
Identities = 16/26 (61%), Positives = 20/26 (76%)
Frame = -1
Query: 1546 F*IPNHHYKWRVMPFDLKTAQSLFQK 1469
F +PN H +W V+PF LKTA SLFQ+
Sbjct: 540 FCLPNRHLQWNVLPFGLKTAPSLFQQ 565
>ref|XP_006393720.1| hypothetical protein EUTSA_v10012231mg, partial [Eutrema salsugineum]
gi|557090298|gb|ESQ31006.1| hypothetical protein
EUTSA_v10012231mg, partial [Eutrema salsugineum]
Length = 1904
Score = 78.6 bits (192), Expect(2) = 1e-28
Identities = 66/211 (31%), Positives = 95/211 (45%), Gaps = 5/211 (2%)
Frame = -1
Query: 1546 F*IPNHHYKWRVMPFDLKTAQSLFQKV*SGSSSPSFTQ-ISYILRYLVSLDYIP*ASPVT 1370
F IP+HH++W+VMPF LK A SLFQK + P + YI L+ I + +
Sbjct: 1346 FCIPDHHFQWKVMPFGLKVAPSLFQKAMTKIFEPILPNALVYIDDILLFSPDIDSHTRLL 1405
Query: 1369 FQRY*GIWHYGVT---KKNGLGPAEC*FTRNGICARPLQARNLYC*RIVEIPRRKPYCQT 1199
+ + + YG+ KK +G E F I + ++ E P K +
Sbjct: 1406 EKFHKIVQQYGIMLSEKKMAIGETEIDFIGMHISKGQYHLQPHIATQLNEFPDDKLSFKQ 1465
Query: 1198 GSTIPWYCELSLRIYSRTVKDIHALTKMLSKDPPPWTQAQTQAILT*KSRLRNIPNLQTL 1019
K L+ L KD PPW + T+A+ K + +P+L+
Sbjct: 1466 VQQFLGVVNYMAEFIHGLAKYRSILSTQLKKDAPPWDERCTEAVKELKRISKTLPSLKIP 1525
Query: 1018 SARKRILQTDATDKY*GATLIE-DLDGKKII 929
S KRILQTDA+D Y GA L+E D GK+ I
Sbjct: 1526 SKGKRILQTDASDCYWGAVLLEKDEKGKRSI 1556
Score = 77.0 bits (188), Expect(2) = 1e-28
Identities = 39/87 (44%), Positives = 52/87 (59%), Gaps = 17/87 (19%)
Frame = -3
Query: 941 KKDYCGFASG*FKDLEIHYHSTFKKILAVKYAIKKFNYHLIGHHFLIECDMSAYHS---- 774
K+ CG+ SG FKD E HYHST+K+ILAVK I+KF H++G HFLIE DMS++
Sbjct: 1553 KRSICGYKSGVFKDSEKHYHSTYKEILAVKRGIEKFESHIVGQHFLIEMDMSSFSKMIQF 1612
Query: 773 -------------STTVSQYSFEVHHI 732
++ SQ+ F+V HI
Sbjct: 1613 KQKILPQAQLLRWASWFSQWKFDVKHI 1639
Score = 80.1 bits (196), Expect = 2e-12
Identities = 38/91 (41%), Positives = 60/91 (65%), Gaps = 3/91 (3%)
Frame = -2
Query: 1416 DILLVSTTYPEHLQLLSN---VIKEYGIMVSQRKMVLAQQSVSLLGMEFVQGHYKPGTYI 1246
DILL S H +LL ++++YGIM+S++KM + + + +GM +G Y +I
Sbjct: 1390 DILLFSPDIDSHTRLLEKFHKIVQQYGIMLSEKKMAIGETEIDFIGMHISKGQYHLQPHI 1449
Query: 1245 AEELLKFPEENLTVKQVQRFLGIVNYL*EFI 1153
A +L +FP++ L+ KQVQ+FLG+VNY+ EFI
Sbjct: 1450 ATQLNEFPDDKLSFKQVQQFLGVVNYMAEFI 1480
>ref|XP_002317406.1| predicted protein [Populus trichocarpa]
Length = 409
Score = 62.4 bits (150), Expect(3) = 2e-28
Identities = 26/50 (52%), Positives = 36/50 (72%)
Frame = -3
Query: 929 CGFASG*FKDLEIHYHSTFKKILAVKYAIKKFNYHLIGHHFLIECDMSAY 780
CG+ SG FK+ E HYHS F +ILAVKY I+KF +HL +HF + + S++
Sbjct: 222 CGYKSGSFKESETHYHSIFMEILAVKYGIQKFEFHLAAYHFTVIMNYSSF 271
Score = 57.4 bits (137), Expect(3) = 2e-28
Identities = 31/74 (41%), Positives = 41/74 (55%)
Frame = -1
Query: 1150 RTVKDIHALTKMLSKDPPPWTQAQTQAILT*KSRLRNIPNLQTLSARKRILQTDATDKY* 971
R + L ML KD PWT+ QTQA+ K+ +N+ L S RILQTDA D+Y
Sbjct: 148 RVAQMTRPLQLMLKKDADPWTEKQTQAVRQLKTTTQNLSTLVIPSTGHRILQTDANDQYW 207
Query: 970 GATLIEDLDGKKII 929
L+ED +G + I
Sbjct: 208 SVVLLEDKNGHRHI 221
Score = 55.1 bits (131), Expect(3) = 2e-28
Identities = 29/50 (58%), Positives = 33/50 (66%)
Frame = -2
Query: 1272 GHYKPGTYIAEELLKFPEENLTVKQVQRFLGIVNYL*EFIPAQLKTFMPL 1123
G Y PG +IAEEL KF + LT KQVQ+FLGIV YL FIP + PL
Sbjct: 107 GAYTPGAHIAEELQKFSDGPLTRKQVQQFLGIVQYLRNFIPRVAQMTRPL 156
>ref|XP_004509642.1| PREDICTED: genome polyprotein-like [Cicer arietinum]
Length = 168
Score = 77.8 bits (190), Expect(3) = 3e-28
Identities = 37/79 (46%), Positives = 54/79 (68%)
Frame = -2
Query: 1341 MVSQRKMVLAQQSVSLLGMEFVQGHYKPGTYIAEELLKFPEENLTVKQVQRFLGIVNYL* 1162
M+ ++K +AQ + LGM F QG Y+P ++A+ELL F +ENLTVKQ+Q+FLGI+NY+
Sbjct: 1 MLFEKKSHIAQIEIDFLGMHFSQGKYQPQPHVAKELLNFLDENLTVKQIQQFLGIINYIR 60
Query: 1161 EFIPAQLKTFMPLLKCLAR 1105
FIP + PL + L +
Sbjct: 61 NFIPRLARYTSPLSQLLRK 79
Score = 53.1 bits (126), Expect(3) = 3e-28
Identities = 27/64 (42%), Positives = 38/64 (59%)
Frame = -1
Query: 1126 LTKMLSKDPPPWTQAQTQAILT*KSRLRNIPNLQTLSARKRILQTDATDKY*GATLIEDL 947
L+++L K+PPPW T A+ K + P L+ KR LQTD +D Y GA LIE++
Sbjct: 73 LSQLLRKNPPPWDPKHTDAVKALKRIAQTPPALKIPRNGKRTLQTDVSDHYRGAVLIEEI 132
Query: 946 DGKK 935
+G K
Sbjct: 133 NGVK 136
Score = 43.1 bits (100), Expect(3) = 3e-28
Identities = 18/30 (60%), Positives = 22/30 (73%)
Frame = -3
Query: 938 KDYCGFASG*FKDLEIHYHSTFKKILAVKY 849
K YCG A G FK+ E HYH+T+K+ LAV Y
Sbjct: 136 KHYCGHACGQFKEAEKHYHTTYKEALAVNY 165
>sp|Q6XKE6.1|POLG_PVCV2 RecName: Full=Genome polyprotein; Contains: RecName: Full=Movement
protein; Short=MP; Contains: RecName: Full=Capsid
protein; Short=CP; Contains: RecName: Full=Aspartic
protease; Short=PR; Contains: RecName: Full=Reverse
transcriptase; Short=RT gi|34328896|gb|AAO67368.1|
polyprotein 1 [Petunia vein clearing virus]
Length = 2180
Score = 102 bits (253), Expect(2) = 2e-26
Identities = 49/107 (45%), Positives = 75/107 (70%), Gaps = 3/107 (2%)
Frame = -2
Query: 1416 DILLVSTTYPEHLQLLS---NVIKEYGIMVSQRKMVLAQQSVSLLGMEFVQGHYKPGTYI 1246
DILL S T +H++LL+ +++K++G+M+S +KM+LAQ + LGM+F G + P +I
Sbjct: 1544 DILLFSETLEDHIKLLNQFISLVKKFGVMLSAKKMILAQNKIQFLGMDFADGTFSPAGHI 1603
Query: 1245 AEELLKFPEENLTVKQVQRFLGIVNYL*EFIPAQLKTFMPLLKCLAR 1105
+ EL KFP+ NL+VKQ+Q+FLGIVNY+ +FIP + PL L +
Sbjct: 1604 SLELQKFPDTNLSVKQIQQFLGIVNYIRDFIPEVTEHISPLSDMLKK 1650
Score = 45.8 bits (107), Expect(2) = 2e-26
Identities = 19/27 (70%), Positives = 23/27 (85%)
Frame = -1
Query: 1549 GF*IPNHHYKWRVMPFDLKTAQSLFQK 1469
GF IP+ H++W+VMPF LKTA SLFQK
Sbjct: 1499 GFCIPDRHFQWKVMPFGLKTAPSLFQK 1525
Score = 73.6 bits (179), Expect(2) = 2e-20
Identities = 66/190 (34%), Positives = 85/190 (44%), Gaps = 45/190 (23%)
Frame = -3
Query: 941 KKDYCGFASG*FKDLEIHYHSTFKKILAVKYAIKKFNYHLIGHHFLIECDMSAYHSSTTV 762
K+ CGFASG FK E HYHSTFK+ILAVK IKKFN+ LI +FL+E DM A+ +
Sbjct: 1706 KRKICGFASGKFKVSEQHYHSTFKEILAVKNGIKKFNFFLIHTNFLVEMDMRAFPKMIRL 1765
Query: 761 -----------------SQYSFEVHHIVSR---------RLWIFSQDL-----IIILTRG 675
S Y FEV H+ + R FSQ L +++ R
Sbjct: 1766 NPKIVPNSQLLRWAQWFSPYQFEVKHLKGKDNILADFLSRPHEFSQRLKNSPKVLMFQRR 1825
Query: 674 SRTNPYVLN*YFWISSRISYLT*IF*PRNNEE--------------QVQTNQKIQKFFKL 537
+R+N S+ SY P N E + +T ++Q FK
Sbjct: 1826 TRSNSTKSKADSSQSTGSSYKLSHNLPENPPEAFDLDYPWDTSVFLERRTFYELQ-VFKK 1884
Query: 536 YGCSALNPFG 507
YG S L PFG
Sbjct: 1885 YGGSILRPFG 1894
Score = 53.9 bits (128), Expect(2) = 2e-20
Identities = 28/69 (40%), Positives = 41/69 (59%)
Frame = -1
Query: 1135 IHALTKMLSKDPPPWTQAQTQAILT*KSRLRNIPNLQTLSARKRILQTDATDKY*GATLI 956
I L+ ML K PP W + Q A+ K + + +L S K+ILQTDA+D+Y A L+
Sbjct: 1641 ISPLSDMLKKKPPAWGKCQDNAVKQLKQLAQQVKSLHIPSEGKKILQTDASDQYWSAVLL 1700
Query: 955 EDLDGKKII 929
E+ +GK+ I
Sbjct: 1701 EEHNGKRKI 1709
>ref|NP_127504.1| ORF I polyprotein [Petunia vein clearing virus]
gi|82061579|sp|Q91DM0.1|POLG_PVCV1 RecName: Full=Genome
polyprotein; Contains: RecName: Full=Movement protein;
Short=MP; Contains: RecName: Full=Capsid protein;
Short=CP; Contains: RecName: Full=Aspartic protease;
Short=PR; Contains: RecName: Full=Reverse transcriptase;
Short=RT gi|14574598|gb|AAK68664.1| ORF I polyprotein
[petunia vein clearing virus]
Length = 2179
Score = 102 bits (253), Expect(2) = 2e-26
Identities = 49/107 (45%), Positives = 75/107 (70%), Gaps = 3/107 (2%)
Frame = -2
Query: 1416 DILLVSTTYPEHLQLLS---NVIKEYGIMVSQRKMVLAQQSVSLLGMEFVQGHYKPGTYI 1246
DILL S T +H++LL+ +++K++G+M+S +KM+LAQ + LGM+F G + P +I
Sbjct: 1543 DILLFSETLEDHIKLLNQFISLVKKFGVMLSAKKMILAQNKIQFLGMDFADGTFSPAGHI 1602
Query: 1245 AEELLKFPEENLTVKQVQRFLGIVNYL*EFIPAQLKTFMPLLKCLAR 1105
+ EL KFP+ NL+VKQ+Q+FLGIVNY+ +FIP + PL L +
Sbjct: 1603 SLELQKFPDTNLSVKQIQQFLGIVNYIRDFIPEVTEHISPLSDMLKK 1649
Score = 45.8 bits (107), Expect(2) = 2e-26
Identities = 19/27 (70%), Positives = 23/27 (85%)
Frame = -1
Query: 1549 GF*IPNHHYKWRVMPFDLKTAQSLFQK 1469
GF IP+ H++W+VMPF LKTA SLFQK
Sbjct: 1498 GFCIPDRHFQWKVMPFGLKTAPSLFQK 1524
Score = 72.4 bits (176), Expect(2) = 5e-20
Identities = 41/87 (47%), Positives = 49/87 (56%), Gaps = 17/87 (19%)
Frame = -3
Query: 941 KKDYCGFASG*FKDLEIHYHSTFKKILAVKYAIKKFNYHLIGHHFLIECDMSAYHSSTTV 762
K+ CGFASG FK E HYHSTFK+ILAVK IKKFN+ LI +FL+E DM A+ +
Sbjct: 1705 KRKICGFASGKFKVSEQHYHSTFKEILAVKNGIKKFNFFLIHTNFLVEMDMRAFPKMIRL 1764
Query: 761 -----------------SQYSFEVHHI 732
S Y FEV H+
Sbjct: 1765 NPKIVPNSQLLRWAQWFSPYQFEVKHL 1791
Score = 53.9 bits (128), Expect(2) = 5e-20
Identities = 28/69 (40%), Positives = 41/69 (59%)
Frame = -1
Query: 1135 IHALTKMLSKDPPPWTQAQTQAILT*KSRLRNIPNLQTLSARKRILQTDATDKY*GATLI 956
I L+ ML K PP W + Q A+ K + + +L S K+ILQTDA+D+Y A L+
Sbjct: 1640 ISPLSDMLKKKPPAWGKCQDNAVKQLKQLAQQVKSLHIPSEGKKILQTDASDQYWSAVLL 1699
Query: 955 EDLDGKKII 929
E+ +GK+ I
Sbjct: 1700 EEHNGKRKI 1708
>gb|AAO67369.1| polyprotein 1 [Petunia vein clearing virus]
Length = 1886
Score = 102 bits (253), Expect(2) = 2e-26
Identities = 49/107 (45%), Positives = 75/107 (70%), Gaps = 3/107 (2%)
Frame = -2
Query: 1416 DILLVSTTYPEHLQLLS---NVIKEYGIMVSQRKMVLAQQSVSLLGMEFVQGHYKPGTYI 1246
DILL S T +H++LL+ +++K++G+M+S +KM+LAQ + LGM+F G + P +I
Sbjct: 1544 DILLFSETLEDHIKLLNQFISLVKKFGVMLSAKKMILAQNKIQFLGMDFADGTFSPAGHI 1603
Query: 1245 AEELLKFPEENLTVKQVQRFLGIVNYL*EFIPAQLKTFMPLLKCLAR 1105
+ EL KFP+ NL+VKQ+Q+FLGIVNY+ +FIP + PL L +
Sbjct: 1604 SLELQKFPDTNLSVKQIQQFLGIVNYIRDFIPEVTEHISPLSDMLKK 1650
Score = 45.8 bits (107), Expect(2) = 2e-26
Identities = 19/27 (70%), Positives = 23/27 (85%)
Frame = -1
Query: 1549 GF*IPNHHYKWRVMPFDLKTAQSLFQK 1469
GF IP+ H++W+VMPF LKTA SLFQK
Sbjct: 1499 GFCIPDRHFQWKVMPFGLKTAPSLFQK 1525
Score = 72.4 bits (176), Expect(2) = 5e-20
Identities = 41/87 (47%), Positives = 49/87 (56%), Gaps = 17/87 (19%)
Frame = -3
Query: 941 KKDYCGFASG*FKDLEIHYHSTFKKILAVKYAIKKFNYHLIGHHFLIECDMSAYHSSTTV 762
K+ CGFASG FK E HYHSTFK+ILAVK IKKFN+ LI +FL+E DM A+ +
Sbjct: 1706 KRKICGFASGKFKVSEQHYHSTFKEILAVKNGIKKFNFFLIHTNFLVEMDMRAFPKMIRL 1765
Query: 761 -----------------SQYSFEVHHI 732
S Y FEV H+
Sbjct: 1766 NPKIVPNSQLLRWAQWFSPYQFEVKHL 1792
Score = 53.9 bits (128), Expect(2) = 5e-20
Identities = 28/69 (40%), Positives = 41/69 (59%)
Frame = -1
Query: 1135 IHALTKMLSKDPPPWTQAQTQAILT*KSRLRNIPNLQTLSARKRILQTDATDKY*GATLI 956
I L+ ML K PP W + Q A+ K + + +L S K+ILQTDA+D+Y A L+
Sbjct: 1641 ISPLSDMLKKKPPAWGKCQDNAVKQLKQLAQQVKSLHIPSEGKKILQTDASDQYWSAVLL 1700
Query: 955 EDLDGKKII 929
E+ +GK+ I
Sbjct: 1701 EEHNGKRKI 1709
>gb|AAD37341.1|AF140604_5 reverse transcriptase [Cauliflower mosaic virus]
Length = 674
Score = 68.6 bits (166), Expect(4) = 1e-25
Identities = 36/101 (35%), Positives = 64/101 (63%), Gaps = 3/101 (2%)
Frame = -2
Query: 1416 DILLVSTTYPEHLQLLSNVIK---EYGIMVSQRKMVLAQQSVSLLGMEFVQGHYKPGTYI 1246
DIL+ S T +HL ++ +++ ++GI++S++K L ++ ++ LG+E +G +KP +I
Sbjct: 399 DILVFSNTEEDHLLHVAMILQKCNQHGIILSKKKAQLFKKKINFLGLEIDEGTHKPQGHI 458
Query: 1245 AEELLKFPEENLTVKQVQRFLGIVNYL*EFIPAQLKTFMPL 1123
E + KFP+ KQ+QRFLGI+ Y ++IP + PL
Sbjct: 459 LEHINKFPDTLEDKKQLQRFLGILTYASDYIPKLAQIRKPL 499
Score = 50.1 bits (118), Expect(4) = 1e-25
Identities = 32/84 (38%), Positives = 41/84 (48%), Gaps = 18/84 (21%)
Frame = -3
Query: 929 CGFASG*FKDLEIHYHSTFKKILAVKYAIKKFNYHLIGHHFLIECDMSAYHS-------- 774
C +ASG FK E +YHS K+ LAV IKKF+ +L HFLI D + + S
Sbjct: 571 CRYASGSFKAAEKNYHSNDKETLAVINTIKKFSIYLTPVHFLIRTDNTHFKSFVNLNYKG 630
Query: 773 ----------STTVSQYSFEVHHI 732
+S YSF+V HI
Sbjct: 631 DSKLGRNIRWQAWLSHYSFDVEHI 654
Score = 35.4 bits (80), Expect(4) = 1e-25
Identities = 14/26 (53%), Positives = 18/26 (69%)
Frame = -1
Query: 1546 F*IPNHHYKWRVMPFDLKTAQSLFQK 1469
F P HY+W V+PF LK A S+FQ+
Sbjct: 355 FTCPQGHYEWNVVPFGLKQAPSIFQR 380
Score = 30.8 bits (68), Expect(4) = 1e-25
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Frame = -1
Query: 1120 KMLSKDPPPWTQAQTQAILT*KSRLRNIPNL-QTLSARKRILQTDATDKY*GATL 959
K+ P WT+ T + K L+ P L + L K I++TDA+D Y G L
Sbjct: 502 KLKENVPWKWTKEDTLYMQKVKKNLQGFPPLHRPLPEEKLIIETDASDDYWGGML 556
>ref|XP_006376643.1| hypothetical protein POPTR_0012s01890g [Populus trichocarpa]
gi|550326181|gb|ERP54440.1| hypothetical protein
POPTR_0012s01890g [Populus trichocarpa]
Length = 1153
Score = 88.6 bits (218), Expect(3) = 3e-25
Identities = 47/101 (46%), Positives = 64/101 (63%), Gaps = 3/101 (2%)
Frame = -2
Query: 1416 DILLVSTTYPEH---LQLLSNVIKEYGIMVSQRKMVLAQQSVSLLGMEFVQGHYKPGTYI 1246
D+LL S H LQ + ++ ++GIM+S+ KM++ Q+ + LGM F G Y PGT+I
Sbjct: 1003 DVLLFSKDEESHATLLQQFAELVHQHGIMLSESKMLICQKEIEFLGMVFADGAYTPGTHI 1062
Query: 1245 AEELLKFPEENLTVKQVQRFLGIVNYL*EFIPAQLKTFMPL 1123
AEEL KF + L+ KQVQ+FLGIV YL FIP + PL
Sbjct: 1063 AEELQKFSDGPLSRKQVQQFLGIVQYLRNFIPRVAQMTRPL 1103
Score = 50.4 bits (119), Expect(3) = 3e-25
Identities = 26/59 (44%), Positives = 34/59 (57%)
Frame = -1
Query: 1150 RTVKDIHALTKMLSKDPPPWTQAQTQAILT*KSRLRNIPNLQTLSARKRILQTDATDKY 974
R + L ML KD PWT+ QT A+ K+ +N+P L S RILQTDA+D+Y
Sbjct: 1095 RVAQMTRPLQLMLKKDADPWTEKQTHAVRQLKTATQNLPALVIPSTGHRILQTDASDQY 1153
Score = 25.0 bits (53), Expect(3) = 3e-25
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = -3
Query: 1487 PIFVSKGMIRIVKPILHTNLVYIE 1416
P+ K MI++ +P+L + VYI+
Sbjct: 979 PLLFQKAMIKVFEPMLPSAFVYID 1002
>gb|AGT42056.1| reverse transcriptase [Cauliflower mosaic virus]
gi|530722419|gb|AGT42084.1| reverse transcriptase
[Cauliflower mosaic virus]
Length = 675
Score = 66.6 bits (161), Expect(4) = 5e-25
Identities = 35/101 (34%), Positives = 63/101 (62%), Gaps = 3/101 (2%)
Frame = -2
Query: 1416 DILLVSTTYPEHLQLLSNVIK---EYGIMVSQRKMVLAQQSVSLLGMEFVQGHYKPGTYI 1246
DIL+ S +HL ++ +++ ++GI++S++K L ++ ++ LG+E +G +KP +I
Sbjct: 400 DILVFSNNEEDHLLHVAMILQKCNQHGIILSKKKAQLFKKKINFLGLEIDEGTHKPQGHI 459
Query: 1245 AEELLKFPEENLTVKQVQRFLGIVNYL*EFIPAQLKTFMPL 1123
E + KFP+ KQ+QRFLGI+ Y ++IP + PL
Sbjct: 460 LEHINKFPDTLEDKKQLQRFLGILTYASDYIPKLAQIRKPL 500
Score = 50.4 bits (119), Expect(4) = 5e-25
Identities = 32/84 (38%), Positives = 41/84 (48%), Gaps = 18/84 (21%)
Frame = -3
Query: 929 CGFASG*FKDLEIHYHSTFKKILAVKYAIKKFNYHLIGHHFLIECDMSAYHS-------- 774
C +ASG FK E +YHS K+ LAV IKKF+ +L HFLI D + + S
Sbjct: 572 CRYASGSFKTAEKNYHSNDKETLAVINTIKKFSIYLTPVHFLIRTDNTHFKSFVNLNYKG 631
Query: 773 ----------STTVSQYSFEVHHI 732
+S YSF+V HI
Sbjct: 632 DSKLGRNIRWQAWLSHYSFDVEHI 655
Score = 35.4 bits (80), Expect(4) = 5e-25
Identities = 14/26 (53%), Positives = 18/26 (69%)
Frame = -1
Query: 1546 F*IPNHHYKWRVMPFDLKTAQSLFQK 1469
F P HY+W V+PF LK A S+FQ+
Sbjct: 356 FTCPQGHYEWNVVPFGLKQAPSIFQR 381
Score = 30.4 bits (67), Expect(4) = 5e-25
Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Frame = -1
Query: 1120 KMLSKDPPPWTQAQTQAILT*KSRLRNIPNLQ-TLSARKRILQTDATDKY*GATL 959
K+ P WT+ T + K L+ P L L K I++TDA+D Y G L
Sbjct: 503 KLKENVPWKWTKEDTLYMQKVKKNLQGFPPLHHPLPEEKLIIETDASDDYWGGML 557
>sp|Q02964.1|POL_CAMVE RecName: Full=Enzymatic polyprotein; Includes: RecName: Full=Aspartic
protease; Includes: RecName: Full=Endonuclease; Includes:
RecName: Full=Reverse transcriptase
gi|293185|gb|AAA62375.1| reverse transcriptase
[Cauliflower mosaic virus]
Length = 679
Score = 66.6 bits (161), Expect(4) = 6e-25
Identities = 35/101 (34%), Positives = 63/101 (62%), Gaps = 3/101 (2%)
Frame = -2
Query: 1416 DILLVSTTYPEHLQLLSNVIK---EYGIMVSQRKMVLAQQSVSLLGMEFVQGHYKPGTYI 1246
DIL+ S +HL ++ +++ ++GI++S++K L ++ ++ LG+E +G +KP +I
Sbjct: 404 DILVFSNNEEDHLLHVAMILQKCNQHGIILSKKKAQLFKKKINFLGLEIDEGTHKPQGHI 463
Query: 1245 AEELLKFPEENLTVKQVQRFLGIVNYL*EFIPAQLKTFMPL 1123
E + KFP+ KQ+QRFLGI+ Y ++IP + PL
Sbjct: 464 LEHINKFPDTLEDKKQLQRFLGILTYASDYIPKLAQIRKPL 504
Score = 50.1 bits (118), Expect(4) = 6e-25
Identities = 32/84 (38%), Positives = 41/84 (48%), Gaps = 18/84 (21%)
Frame = -3
Query: 929 CGFASG*FKDLEIHYHSTFKKILAVKYAIKKFNYHLIGHHFLIECDMSAYHS-------- 774
C +ASG FK E +YHS K+ LAV IKKF+ +L HFLI D + + S
Sbjct: 576 CRYASGSFKAAERNYHSNDKETLAVINTIKKFSIYLTPVHFLIRTDNTHFKSFVNLNYKG 635
Query: 773 ----------STTVSQYSFEVHHI 732
+S YSF+V HI
Sbjct: 636 DSKLGRNIRWQAWLSHYSFDVEHI 659
Score = 35.4 bits (80), Expect(4) = 6e-25
Identities = 14/26 (53%), Positives = 18/26 (69%)
Frame = -1
Query: 1546 F*IPNHHYKWRVMPFDLKTAQSLFQK 1469
F P HY+W V+PF LK A S+FQ+
Sbjct: 360 FTCPQGHYEWNVVPFGLKQAPSIFQR 385
Score = 30.4 bits (67), Expect(4) = 6e-25
Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Frame = -1
Query: 1120 KMLSKDPPPWTQAQTQAILT*KSRLRNIPNLQ-TLSARKRILQTDATDKY*GATL 959
K+ P WT+ T + K L+ P L L K I++TDA+D Y G L
Sbjct: 507 KLKENVPWKWTKEDTLYMQKVKKNLQGFPPLHHPLPEEKLIIETDASDDYWGGML 561
>sp|P03555.1|POL_CAMVC RecName: Full=Enzymatic polyprotein; Includes: RecName: Full=Aspartic
protease; Includes: RecName: Full=Endonuclease; Includes:
RecName: Full=Reverse transcriptase
Length = 679
Score = 66.6 bits (161), Expect(4) = 6e-25
Identities = 35/101 (34%), Positives = 63/101 (62%), Gaps = 3/101 (2%)
Frame = -2
Query: 1416 DILLVSTTYPEHLQLLSNVIK---EYGIMVSQRKMVLAQQSVSLLGMEFVQGHYKPGTYI 1246
DIL+ S +HL ++ +++ ++GI++S++K L ++ ++ LG+E +G +KP +I
Sbjct: 404 DILVFSNNEEDHLLHVAMILQKCNQHGIILSKKKAQLFKKKINFLGLEIDEGTHKPQGHI 463
Query: 1245 AEELLKFPEENLTVKQVQRFLGIVNYL*EFIPAQLKTFMPL 1123
E + KFP+ KQ+QRFLGI+ Y ++IP + PL
Sbjct: 464 LEHINKFPDTLEDKKQLQRFLGILTYASDYIPKLAQIRKPL 504
Score = 50.1 bits (118), Expect(4) = 6e-25
Identities = 32/84 (38%), Positives = 41/84 (48%), Gaps = 18/84 (21%)
Frame = -3
Query: 929 CGFASG*FKDLEIHYHSTFKKILAVKYAIKKFNYHLIGHHFLIECDMSAYHS-------- 774
C +ASG FK E +YHS K+ LAV IKKF+ +L HFLI D + + S
Sbjct: 576 CRYASGSFKAAERNYHSNDKETLAVINTIKKFSIYLTPVHFLIRTDNTHFKSFVNLNYKG 635
Query: 773 ----------STTVSQYSFEVHHI 732
+S YSF+V HI
Sbjct: 636 DSKLGRNIRWQAWLSHYSFDVEHI 659
Score = 35.4 bits (80), Expect(4) = 6e-25
Identities = 14/26 (53%), Positives = 18/26 (69%)
Frame = -1
Query: 1546 F*IPNHHYKWRVMPFDLKTAQSLFQK 1469
F P HY+W V+PF LK A S+FQ+
Sbjct: 360 FTCPQGHYEWNVVPFGLKQAPSIFQR 385
Score = 30.4 bits (67), Expect(4) = 6e-25
Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Frame = -1
Query: 1120 KMLSKDPPPWTQAQTQAILT*KSRLRNIPNLQ-TLSARKRILQTDATDKY*GATL 959
K+ P WT+ T + K L+ P L L K I++TDA+D Y G L
Sbjct: 507 KLKENVPWKWTKEDTLYMQKVKKNLQGFPPLHHPLPEEKLIIETDASDDYWGGML 561
>gb|AFI61742.1| reverse transcriptase [Cauliflower mosaic virus]
Length = 679
Score = 66.6 bits (161), Expect(4) = 6e-25
Identities = 35/101 (34%), Positives = 63/101 (62%), Gaps = 3/101 (2%)
Frame = -2
Query: 1416 DILLVSTTYPEHLQLLSNVIK---EYGIMVSQRKMVLAQQSVSLLGMEFVQGHYKPGTYI 1246
DIL+ S +HL ++ +++ ++GI++S++K L ++ ++ LG+E +G +KP +I
Sbjct: 404 DILVFSNNEEDHLLHVAMILQKCNQHGIILSKKKAQLFKKKINFLGLEIDEGTHKPQGHI 463
Query: 1245 AEELLKFPEENLTVKQVQRFLGIVNYL*EFIPAQLKTFMPL 1123
E + KFP+ KQ+QRFLGI+ Y ++IP + PL
Sbjct: 464 LEHINKFPDTLEDKKQLQRFLGILTYASDYIPKLAQIRKPL 504
Score = 50.1 bits (118), Expect(4) = 6e-25
Identities = 32/84 (38%), Positives = 41/84 (48%), Gaps = 18/84 (21%)
Frame = -3
Query: 929 CGFASG*FKDLEIHYHSTFKKILAVKYAIKKFNYHLIGHHFLIECDMSAYHS-------- 774
C +ASG FK E +YHS K+ LAV IKKF+ +L HFLI D + + S
Sbjct: 576 CRYASGSFKAAEKNYHSNDKETLAVINTIKKFSIYLTPVHFLIRTDNTHFKSFVNLNYKG 635
Query: 773 ----------STTVSQYSFEVHHI 732
+S YSF+V HI
Sbjct: 636 DSKLGRNIRWQAWLSHYSFDVEHI 659
Score = 35.4 bits (80), Expect(4) = 6e-25
Identities = 14/26 (53%), Positives = 18/26 (69%)
Frame = -1
Query: 1546 F*IPNHHYKWRVMPFDLKTAQSLFQK 1469
F P HY+W V+PF LK A S+FQ+
Sbjct: 360 FTCPQGHYEWNVVPFGLKQAPSIFQR 385
Score = 30.4 bits (67), Expect(4) = 6e-25
Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Frame = -1
Query: 1120 KMLSKDPPPWTQAQTQAILT*KSRLRNIPNLQ-TLSARKRILQTDATDKY*GATL 959
K+ P WT+ T + K L+ P L L K I++TDA+D Y G L
Sbjct: 507 KLKENVPWKWTKEDTLYMQKVKKNLQGFPPLHHPLPEEKLIIETDASDDYWGGML 561
>gb|AGT42189.1| reverse transcriptase [Cauliflower mosaic virus]
Length = 675
Score = 66.6 bits (161), Expect(4) = 6e-25
Identities = 35/101 (34%), Positives = 63/101 (62%), Gaps = 3/101 (2%)
Frame = -2
Query: 1416 DILLVSTTYPEHLQLLSNVIK---EYGIMVSQRKMVLAQQSVSLLGMEFVQGHYKPGTYI 1246
DIL+ S +HL ++ +++ ++GI++S++K L ++ ++ LG+E +G +KP +I
Sbjct: 400 DILVFSNNEEDHLLHVAMILQKCNQHGIILSKKKAQLFKKKINFLGLEIDEGTHKPQGHI 459
Query: 1245 AEELLKFPEENLTVKQVQRFLGIVNYL*EFIPAQLKTFMPL 1123
E + KFP+ KQ+QRFLGI+ Y ++IP + PL
Sbjct: 460 LEHINKFPDTLEDKKQLQRFLGILTYASDYIPKLAQIRKPL 500
Score = 50.1 bits (118), Expect(4) = 6e-25
Identities = 32/84 (38%), Positives = 41/84 (48%), Gaps = 18/84 (21%)
Frame = -3
Query: 929 CGFASG*FKDLEIHYHSTFKKILAVKYAIKKFNYHLIGHHFLIECDMSAYHS-------- 774
C +ASG FK E +YHS K+ LAV IKKF+ +L HFLI D + + S
Sbjct: 572 CRYASGSFKAAEKNYHSNDKETLAVINTIKKFSIYLTPVHFLIRTDNTHFKSFVNLNYKG 631
Query: 773 ----------STTVSQYSFEVHHI 732
+S YSF+V HI
Sbjct: 632 DSKLGRNIRWQAWLSHYSFDVEHI 655
Score = 35.4 bits (80), Expect(4) = 6e-25
Identities = 14/26 (53%), Positives = 18/26 (69%)
Frame = -1
Query: 1546 F*IPNHHYKWRVMPFDLKTAQSLFQK 1469
F P HY+W V+PF LK A S+FQ+
Sbjct: 356 FTCPQGHYEWNVVPFGLKQAPSIFQR 381
Score = 30.4 bits (67), Expect(4) = 6e-25
Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Frame = -1
Query: 1120 KMLSKDPPPWTQAQTQAILT*KSRLRNIPNLQ-TLSARKRILQTDATDKY*GATL 959
K+ P WT+ T + K L+ P L L K I++TDA+D Y G L
Sbjct: 503 KLKENVPWKWTKEDTLYMQKVKKNLQGFPPLHHPLPEEKLIIETDASDDYWGGML 557
>gb|AGT42175.1| reverse transcriptase [Cauliflower mosaic virus]
Length = 675
Score = 66.6 bits (161), Expect(4) = 6e-25
Identities = 35/101 (34%), Positives = 63/101 (62%), Gaps = 3/101 (2%)
Frame = -2
Query: 1416 DILLVSTTYPEHLQLLSNVIK---EYGIMVSQRKMVLAQQSVSLLGMEFVQGHYKPGTYI 1246
DIL+ S +HL ++ +++ ++GI++S++K L ++ ++ LG+E +G +KP +I
Sbjct: 400 DILVFSNNEEDHLLHVAMILQKCNQHGIILSKKKAQLFKKKINFLGLEIDEGTHKPQGHI 459
Query: 1245 AEELLKFPEENLTVKQVQRFLGIVNYL*EFIPAQLKTFMPL 1123
E + KFP+ KQ+QRFLGI+ Y ++IP + PL
Sbjct: 460 LEHINKFPDTLEDKKQLQRFLGILTYASDYIPKLAQIRKPL 500
Score = 50.1 bits (118), Expect(4) = 6e-25
Identities = 32/84 (38%), Positives = 41/84 (48%), Gaps = 18/84 (21%)
Frame = -3
Query: 929 CGFASG*FKDLEIHYHSTFKKILAVKYAIKKFNYHLIGHHFLIECDMSAYHS-------- 774
C +ASG FK E +YHS K+ LAV IKKF+ +L HFLI D + + S
Sbjct: 572 CRYASGSFKAAEKNYHSNDKETLAVINTIKKFSIYLTPVHFLIRTDNTHFKSFVNLNYKG 631
Query: 773 ----------STTVSQYSFEVHHI 732
+S YSF+V HI
Sbjct: 632 DSKLGRNIRWQAWLSHYSFDVEHI 655
Score = 35.4 bits (80), Expect(4) = 6e-25
Identities = 14/26 (53%), Positives = 18/26 (69%)
Frame = -1
Query: 1546 F*IPNHHYKWRVMPFDLKTAQSLFQK 1469
F P HY+W V+PF LK A S+FQ+
Sbjct: 356 FTCPQGHYEWNVVPFGLKQAPSIFQR 381
Score = 30.4 bits (67), Expect(4) = 6e-25
Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Frame = -1
Query: 1120 KMLSKDPPPWTQAQTQAILT*KSRLRNIPNLQ-TLSARKRILQTDATDKY*GATL 959
K+ P WT+ T + K L+ P L L K I++TDA+D Y G L
Sbjct: 503 KLKENVPWKWTKEDTLYMQKVKKNLQGFPPLHHPLPEEKLIIETDASDDYWGGML 557
>gb|AGT42147.1| reverse transcriptase [Cauliflower mosaic virus]
gi|530722499|gb|AGT42154.1| reverse transcriptase
[Cauliflower mosaic virus]
Length = 675
Score = 66.6 bits (161), Expect(4) = 6e-25
Identities = 35/101 (34%), Positives = 63/101 (62%), Gaps = 3/101 (2%)
Frame = -2
Query: 1416 DILLVSTTYPEHLQLLSNVIK---EYGIMVSQRKMVLAQQSVSLLGMEFVQGHYKPGTYI 1246
DIL+ S +HL ++ +++ ++GI++S++K L ++ ++ LG+E +G +KP +I
Sbjct: 400 DILVFSNNEEDHLLHVAMILQKCNQHGIILSKKKAQLFKKKINFLGLEIDEGTHKPQGHI 459
Query: 1245 AEELLKFPEENLTVKQVQRFLGIVNYL*EFIPAQLKTFMPL 1123
E + KFP+ KQ+QRFLGI+ Y ++IP + PL
Sbjct: 460 LEHINKFPDTLEDKKQLQRFLGILTYASDYIPKLAQIRKPL 500
Score = 50.1 bits (118), Expect(4) = 6e-25
Identities = 32/84 (38%), Positives = 41/84 (48%), Gaps = 18/84 (21%)
Frame = -3
Query: 929 CGFASG*FKDLEIHYHSTFKKILAVKYAIKKFNYHLIGHHFLIECDMSAYHS-------- 774
C +ASG FK E +YHS K+ LAV IKKF+ +L HFLI D + + S
Sbjct: 572 CRYASGSFKAAEKNYHSNDKETLAVINTIKKFSIYLTPVHFLIRTDNTHFKSFVNLNYKG 631
Query: 773 ----------STTVSQYSFEVHHI 732
+S YSF+V HI
Sbjct: 632 DSKLGRNIRWQAWLSHYSFDVEHI 655
Score = 35.4 bits (80), Expect(4) = 6e-25
Identities = 14/26 (53%), Positives = 18/26 (69%)
Frame = -1
Query: 1546 F*IPNHHYKWRVMPFDLKTAQSLFQK 1469
F P HY+W V+PF LK A S+FQ+
Sbjct: 356 FTCPQGHYEWNVVPFGLKQAPSIFQR 381
Score = 30.4 bits (67), Expect(4) = 6e-25
Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Frame = -1
Query: 1120 KMLSKDPPPWTQAQTQAILT*KSRLRNIPNLQ-TLSARKRILQTDATDKY*GATL 959
K+ P WT+ T + K L+ P L L K I++TDA+D Y G L
Sbjct: 503 KLKENVPWKWTKEDTLYMQKVKKNLQGFPPLHHPLPEEKLIIETDASDDYWGGML 557
>gb|AGT42140.1| reverse transcriptase [Cauliflower mosaic virus]
Length = 675
Score = 66.6 bits (161), Expect(4) = 6e-25
Identities = 35/101 (34%), Positives = 63/101 (62%), Gaps = 3/101 (2%)
Frame = -2
Query: 1416 DILLVSTTYPEHLQLLSNVIK---EYGIMVSQRKMVLAQQSVSLLGMEFVQGHYKPGTYI 1246
DIL+ S +HL ++ +++ ++GI++S++K L ++ ++ LG+E +G +KP +I
Sbjct: 400 DILVFSNNEEDHLLHVAMILQKCNQHGIILSKKKAQLFKKKINFLGLEIDEGTHKPQGHI 459
Query: 1245 AEELLKFPEENLTVKQVQRFLGIVNYL*EFIPAQLKTFMPL 1123
E + KFP+ KQ+QRFLGI+ Y ++IP + PL
Sbjct: 460 LEHINKFPDTLEDKKQLQRFLGILTYASDYIPKLAQIRKPL 500
Score = 50.1 bits (118), Expect(4) = 6e-25
Identities = 32/84 (38%), Positives = 41/84 (48%), Gaps = 18/84 (21%)
Frame = -3
Query: 929 CGFASG*FKDLEIHYHSTFKKILAVKYAIKKFNYHLIGHHFLIECDMSAYHS-------- 774
C +ASG FK E +YHS K+ LAV IKKF+ +L HFLI D + + S
Sbjct: 572 CRYASGSFKAAEKNYHSNDKETLAVINTIKKFSIYLTPVHFLIRTDNTHFKSFVNLNYKG 631
Query: 773 ----------STTVSQYSFEVHHI 732
+S YSF+V HI
Sbjct: 632 DSKLGRNIRWQAWLSHYSFDVEHI 655
Score = 35.4 bits (80), Expect(4) = 6e-25
Identities = 14/26 (53%), Positives = 18/26 (69%)
Frame = -1
Query: 1546 F*IPNHHYKWRVMPFDLKTAQSLFQK 1469
F P HY+W V+PF LK A S+FQ+
Sbjct: 356 FTCPQGHYEWNVVPFGLKQAPSIFQR 381
Score = 30.4 bits (67), Expect(4) = 6e-25
Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Frame = -1
Query: 1120 KMLSKDPPPWTQAQTQAILT*KSRLRNIPNLQ-TLSARKRILQTDATDKY*GATL 959
K+ P WT+ T + K L+ P L L K I++TDA+D Y G L
Sbjct: 503 KLKENVPWKWTKEDTLYMQKVKKNLQGFPPLHHPLPEEKLIIETDASDDYWGGML 557
>gb|AGT42112.1| reverse transcriptase [Cauliflower mosaic virus]
Length = 675
Score = 66.6 bits (161), Expect(4) = 6e-25
Identities = 35/101 (34%), Positives = 63/101 (62%), Gaps = 3/101 (2%)
Frame = -2
Query: 1416 DILLVSTTYPEHLQLLSNVIK---EYGIMVSQRKMVLAQQSVSLLGMEFVQGHYKPGTYI 1246
DIL+ S +HL ++ +++ ++GI++S++K L ++ ++ LG+E +G +KP +I
Sbjct: 400 DILVFSNNEEDHLLHVAMILQKCNQHGIILSKKKAQLFKKKINFLGLEIDEGTHKPQGHI 459
Query: 1245 AEELLKFPEENLTVKQVQRFLGIVNYL*EFIPAQLKTFMPL 1123
E + KFP+ KQ+QRFLGI+ Y ++IP + PL
Sbjct: 460 LEHINKFPDTLEDKKQLQRFLGILTYASDYIPKLAQIRKPL 500
Score = 50.1 bits (118), Expect(4) = 6e-25
Identities = 32/84 (38%), Positives = 41/84 (48%), Gaps = 18/84 (21%)
Frame = -3
Query: 929 CGFASG*FKDLEIHYHSTFKKILAVKYAIKKFNYHLIGHHFLIECDMSAYHS-------- 774
C +ASG FK E +YHS K+ LAV IKKF+ +L HFLI D + + S
Sbjct: 572 CRYASGSFKAAEKNYHSNDKETLAVINTIKKFSIYLTPVHFLIRTDNTHFKSFVNLNYKG 631
Query: 773 ----------STTVSQYSFEVHHI 732
+S YSF+V HI
Sbjct: 632 DSKLGRNIRWQAWLSHYSFDVEHI 655
Score = 35.4 bits (80), Expect(4) = 6e-25
Identities = 14/26 (53%), Positives = 18/26 (69%)
Frame = -1
Query: 1546 F*IPNHHYKWRVMPFDLKTAQSLFQK 1469
F P HY+W V+PF LK A S+FQ+
Sbjct: 356 FTCPQGHYEWNVVPFGLKQAPSIFQR 381
Score = 30.4 bits (67), Expect(4) = 6e-25
Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Frame = -1
Query: 1120 KMLSKDPPPWTQAQTQAILT*KSRLRNIPNLQ-TLSARKRILQTDATDKY*GATL 959
K+ P WT+ T + K L+ P L L K I++TDA+D Y G L
Sbjct: 503 KLKENVPWKWTKEDTLYMQKVKKNLQGFPPLHHPLPEEKLIIETDASDDYWGGML 557
>gb|AGT42098.1| reverse transcriptase [Cauliflower mosaic virus]
gi|530722467|gb|AGT42126.1| reverse transcriptase
[Cauliflower mosaic virus] gi|530722475|gb|AGT42133.1|
reverse transcriptase [Cauliflower mosaic virus]
Length = 675
Score = 66.6 bits (161), Expect(4) = 6e-25
Identities = 35/101 (34%), Positives = 63/101 (62%), Gaps = 3/101 (2%)
Frame = -2
Query: 1416 DILLVSTTYPEHLQLLSNVIK---EYGIMVSQRKMVLAQQSVSLLGMEFVQGHYKPGTYI 1246
DIL+ S +HL ++ +++ ++GI++S++K L ++ ++ LG+E +G +KP +I
Sbjct: 400 DILVFSNNEEDHLLHVAMILQKCNQHGIILSKKKAQLFKKKINFLGLEIDEGTHKPQGHI 459
Query: 1245 AEELLKFPEENLTVKQVQRFLGIVNYL*EFIPAQLKTFMPL 1123
E + KFP+ KQ+QRFLGI+ Y ++IP + PL
Sbjct: 460 LEHINKFPDTLEDKKQLQRFLGILTYASDYIPKLAQIRKPL 500
Score = 50.1 bits (118), Expect(4) = 6e-25
Identities = 32/84 (38%), Positives = 41/84 (48%), Gaps = 18/84 (21%)
Frame = -3
Query: 929 CGFASG*FKDLEIHYHSTFKKILAVKYAIKKFNYHLIGHHFLIECDMSAYHS-------- 774
C +ASG FK E +YHS K+ LAV IKKF+ +L HFLI D + + S
Sbjct: 572 CRYASGSFKAAEKNYHSNDKETLAVINTIKKFSIYLTPVHFLIRTDNTHFKSFVNLNYKG 631
Query: 773 ----------STTVSQYSFEVHHI 732
+S YSF+V HI
Sbjct: 632 DSKLGRNIRWQAWLSHYSFDVEHI 655
Score = 35.4 bits (80), Expect(4) = 6e-25
Identities = 14/26 (53%), Positives = 18/26 (69%)
Frame = -1
Query: 1546 F*IPNHHYKWRVMPFDLKTAQSLFQK 1469
F P HY+W V+PF LK A S+FQ+
Sbjct: 356 FTCPQGHYEWNVVPFGLKQAPSIFQR 381
Score = 30.4 bits (67), Expect(4) = 6e-25
Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Frame = -1
Query: 1120 KMLSKDPPPWTQAQTQAILT*KSRLRNIPNLQ-TLSARKRILQTDATDKY*GATL 959
K+ P WT+ T + K L+ P L L K I++TDA+D Y G L
Sbjct: 503 KLKENVPWKWTKEDTLYMQKVKKNLQGFPPLHHPLPEEKLIIETDASDDYWGGML 557