BLASTX nr result
ID: Catharanthus22_contig00020851
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Catharanthus22_contig00020851
(256 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis] 102 4e-20
gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|1337118... 98 1e-18
gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subc... 97 2e-18
gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-... 97 2e-18
emb|CAH66122.1| OSIGBa0146N20.7 [Oryza sativa Indica Group] 97 2e-18
gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subc... 94 2e-17
gb|AAR87163.1| putative polyprotein [Oryza sativa Japonica Group... 94 2e-17
emb|CAN61272.1| hypothetical protein VITISV_039063 [Vitis vinifera] 94 2e-17
emb|CAJ86192.1| H0306F03.15 [Oryza sativa Indica Group] 94 2e-17
emb|CAJ86151.1| H0413E07.4 [Oryza sativa Indica Group] 94 2e-17
gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group] 93 3e-17
gb|AAT01387.1| putative polyprotein [Oryza sativa Japonica Group... 93 3e-17
gb|AAD19773.1| putative retroelement pol polyprotein [Arabidopsi... 93 4e-17
gb|ABA99474.1| retrotransposon protein, putative, Ty1-copia subc... 92 7e-17
gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-... 92 7e-17
gb|AAM91886.1| putative polyprotein [Oryza sativa Japonica Group] 92 7e-17
gb|AAP54315.2| retrotransposon protein, putative, Ty1-copia subc... 92 7e-17
gb|AAT44257.1| putative polyprotein [Oryza sativa Japonica Group] 92 7e-17
emb|CAD40782.2| OSJNBb0012E08.6 [Oryza sativa Japonica Group] 92 7e-17
gb|AAT44282.1| putative polyprotein [Oryza sativa Japonica Group] 92 9e-17
>emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis]
Length = 1334
Score = 102 bits (255), Expect = 4e-20
Identities = 49/83 (59%), Positives = 67/83 (80%)
Frame = -1
Query: 253 YDSCLYFCGDNVETAIYLLLYVDDMLIACKHRDKITRLKSLLKSEFDMKDLGSASRILGM 74
YDSC+YF G + YLLLYVDDMLIA K++ +I RLK+LLK+EF+MKDLG+A RILGM
Sbjct: 992 YDSCVYFGGSDQGGVAYLLLYVDDMLIASKYKSEIERLKNLLKAEFEMKDLGNAKRILGM 1051
Query: 73 NINRDRADRSLFISQKSFLQKIV 5
+I RDR+ +LF+SQ +++K++
Sbjct: 1052 DIIRDRSAGTLFLSQGKYIKKVL 1074
>gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|133711819|gb|ABO36636.1|
copia LTR rider [Solanum lycopersicum]
Length = 1307
Score = 98.2 bits (243), Expect = 1e-18
Identities = 47/85 (55%), Positives = 66/85 (77%)
Frame = -1
Query: 256 NYDSCLYFCGDNVETAIYLLLYVDDMLIACKHRDKITRLKSLLKSEFDMKDLGSASRILG 77
+YD C+Y+ N ++ IYL+LYVDDMLIA K + I +LK LL +EF+MKDLG+A +ILG
Sbjct: 968 SYDCCVYYNRLNDDSFIYLVLYVDDMLIAAKKKYDIQKLKGLLSAEFEMKDLGAARKILG 1027
Query: 76 MNINRDRADRSLFISQKSFLQKIVS 2
M I RDR R LF+SQ+S++QK+++
Sbjct: 1028 MEIIRDRERRKLFLSQRSYIQKVLA 1052
>gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1333
Score = 97.4 bits (241), Expect = 2e-18
Identities = 50/83 (60%), Positives = 64/83 (77%)
Frame = -1
Query: 253 YDSCLYFCGDNVETAIYLLLYVDDMLIACKHRDKITRLKSLLKSEFDMKDLGSASRILGM 74
YDSC+Y N + IYLLLYVDDMLIA K + +IT+LK LL SEFDMKDLGSA +ILGM
Sbjct: 995 YDSCVYIKHVN-GSPIYLLLYVDDMLIAAKSKIEITKLKKLLSSEFDMKDLGSAKKILGM 1053
Query: 73 NINRDRADRSLFISQKSFLQKIV 5
I+RDR LF+SQ ++++K++
Sbjct: 1054 EISRDRKSGLLFLSQHNYIKKVL 1076
>gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
Japonica Group] gi|77549942|gb|ABA92739.1|
retrotransposon protein, putative, Ty1-copia subclass
[Oryza sativa Japonica Group]
Length = 1373
Score = 97.4 bits (241), Expect = 2e-18
Identities = 50/83 (60%), Positives = 64/83 (77%)
Frame = -1
Query: 253 YDSCLYFCGDNVETAIYLLLYVDDMLIACKHRDKITRLKSLLKSEFDMKDLGSASRILGM 74
YDSC+Y N + IYLLLYVDDMLIA K + +IT+LK LL SEFDMKDLGSA +ILGM
Sbjct: 995 YDSCVYIKHVN-GSPIYLLLYVDDMLIAAKSKIEITKLKKLLSSEFDMKDLGSAKKILGM 1053
Query: 73 NINRDRADRSLFISQKSFLQKIV 5
I+RDR LF+SQ ++++K++
Sbjct: 1054 EISRDRKSGLLFLSQHNYIKKVL 1076
>emb|CAH66122.1| OSIGBa0146N20.7 [Oryza sativa Indica Group]
Length = 1335
Score = 97.4 bits (241), Expect = 2e-18
Identities = 50/83 (60%), Positives = 64/83 (77%)
Frame = -1
Query: 253 YDSCLYFCGDNVETAIYLLLYVDDMLIACKHRDKITRLKSLLKSEFDMKDLGSASRILGM 74
YDSC+Y N + IYLLLYVDDMLIA K + +IT+LK LL SEFDMKDLGSA +ILGM
Sbjct: 997 YDSCVYIKHVN-GSPIYLLLYVDDMLIAAKSKIEITKLKKLLSSEFDMKDLGSAKKILGM 1055
Query: 73 NINRDRADRSLFISQKSFLQKIV 5
I+RDR LF+SQ ++++K++
Sbjct: 1056 EISRDRKSGLLFLSQHNYIKKVL 1078
>gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1333
Score = 94.0 bits (232), Expect = 2e-17
Identities = 49/83 (59%), Positives = 63/83 (75%)
Frame = -1
Query: 253 YDSCLYFCGDNVETAIYLLLYVDDMLIACKHRDKITRLKSLLKSEFDMKDLGSASRILGM 74
YDSC+Y N + IYLLLYVDDMLIA K + +IT+LK LL SEFDMKDLGSA +IL M
Sbjct: 995 YDSCVYIKHVN-GSPIYLLLYVDDMLIAAKSKIEITKLKKLLSSEFDMKDLGSAKKILVM 1053
Query: 73 NINRDRADRSLFISQKSFLQKIV 5
I+RDR LF+SQ ++++K++
Sbjct: 1054 EISRDRKSGLLFLSQHNYIKKVL 1076
>gb|AAR87163.1| putative polyprotein [Oryza sativa Japonica Group]
gi|53370655|gb|AAU89150.1| integrase core domain
containing protein [Oryza sativa Japonica Group]
gi|108710286|gb|ABF98081.1| retrotransposon protein,
putative, Ty1-copia subclass [Oryza sativa Japonica
Group]
Length = 1322
Score = 94.0 bits (232), Expect = 2e-17
Identities = 48/83 (57%), Positives = 63/83 (75%)
Frame = -1
Query: 253 YDSCLYFCGDNVETAIYLLLYVDDMLIACKHRDKITRLKSLLKSEFDMKDLGSASRILGM 74
+DSC+Y N + IYLLLYVDDMLIA K +++IT LK L SEFDMKDLG+A +ILGM
Sbjct: 984 FDSCVYIKFVN-GSPIYLLLYVDDMLIAAKSKEQITTLKKQLSSEFDMKDLGAAKKILGM 1042
Query: 73 NINRDRADRSLFISQKSFLQKIV 5
I RDR LF+SQ+S+++K++
Sbjct: 1043 EITRDRNSGLLFLSQQSYIKKVL 1065
>emb|CAN61272.1| hypothetical protein VITISV_039063 [Vitis vinifera]
Length = 1643
Score = 93.6 bits (231), Expect = 2e-17
Identities = 47/83 (56%), Positives = 63/83 (75%)
Frame = -1
Query: 253 YDSCLYFCGDNVETAIYLLLYVDDMLIACKHRDKITRLKSLLKSEFDMKDLGSASRILGM 74
YDSC+YF + IYLLLYVDDMLIA K+R +I +LK LL SEF+MKDLG+A +ILGM
Sbjct: 1293 YDSCVYFKTLPDGSFIYLLLYVDDMLIAAKNRAEINKLKQLLSSEFEMKDLGAAKKILGM 1352
Query: 73 NINRDRADRSLFISQKSFLQKIV 5
I RDR L++SQ+ +++K++
Sbjct: 1353 EIWRDRDAGLLYVSQQKYIEKLM 1375
>emb|CAJ86192.1| H0306F03.15 [Oryza sativa Indica Group]
Length = 1037
Score = 93.6 bits (231), Expect = 2e-17
Identities = 46/84 (54%), Positives = 64/84 (76%)
Frame = -1
Query: 256 NYDSCLYFCGDNVETAIYLLLYVDDMLIACKHRDKITRLKSLLKSEFDMKDLGSASRILG 77
NYDSC+Y + +AIYLLLYVDDMLIA K + +I +LK+ L SEF+MKDLG+A +ILG
Sbjct: 751 NYDSCVYLKVVD-GSAIYLLLYVDDMLIAAKDKSEIAKLKAQLSSEFEMKDLGAAKKILG 809
Query: 76 MNINRDRADRSLFISQKSFLQKIV 5
M I R+R L++SQK +++K++
Sbjct: 810 MEITRERHSDKLYLSQKGYIEKVL 833
>emb|CAJ86151.1| H0413E07.4 [Oryza sativa Indica Group]
Length = 1205
Score = 93.6 bits (231), Expect = 2e-17
Identities = 46/84 (54%), Positives = 64/84 (76%)
Frame = -1
Query: 256 NYDSCLYFCGDNVETAIYLLLYVDDMLIACKHRDKITRLKSLLKSEFDMKDLGSASRILG 77
NYDSC+Y + +AIYLLLYVDDMLIA K + +I +LK+ L SEF+MKDLG+A +ILG
Sbjct: 919 NYDSCVYLKVVD-GSAIYLLLYVDDMLIAAKDKSEIAKLKAQLSSEFEMKDLGAAKKILG 977
Query: 76 MNINRDRADRSLFISQKSFLQKIV 5
M I R+R L++SQK +++K++
Sbjct: 978 MEITRERHSDKLYLSQKGYIEKVL 1001
>gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1241
Score = 93.2 bits (230), Expect = 3e-17
Identities = 46/84 (54%), Positives = 64/84 (76%)
Frame = -1
Query: 256 NYDSCLYFCGDNVETAIYLLLYVDDMLIACKHRDKITRLKSLLKSEFDMKDLGSASRILG 77
NYDSC+Y + +AIYLLLYVDDMLIA K + +I +LK+ L SEF+MKDLG+A +ILG
Sbjct: 902 NYDSCVYLKVVD-GSAIYLLLYVDDMLIAAKDKSEIAKLKAQLSSEFEMKDLGAAKKILG 960
Query: 76 MNINRDRADRSLFISQKSFLQKIV 5
M I R+R L++SQK +++K++
Sbjct: 961 MEITRERHSGKLYLSQKCYIEKVL 984
>gb|AAT01387.1| putative polyprotein [Oryza sativa Japonica Group]
gi|48475101|gb|AAT44170.1| putative polyprotein [Oryza
sativa Japonica Group]
Length = 1175
Score = 93.2 bits (230), Expect = 3e-17
Identities = 48/83 (57%), Positives = 63/83 (75%)
Frame = -1
Query: 253 YDSCLYFCGDNVETAIYLLLYVDDMLIACKHRDKITRLKSLLKSEFDMKDLGSASRILGM 74
+DSC+Y NV + IYLLLYVDDMLIA K +++IT LK L SEFDMKDL +A +ILGM
Sbjct: 837 FDSCVYIKFVNV-SPIYLLLYVDDMLIAAKSKEQITTLKKQLSSEFDMKDLDAAKKILGM 895
Query: 73 NINRDRADRSLFISQKSFLQKIV 5
I RDR LF+SQ+S+++K++
Sbjct: 896 EITRDRNSGWLFLSQQSYIKKVL 918
>gb|AAD19773.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1335
Score = 92.8 bits (229), Expect = 4e-17
Identities = 45/83 (54%), Positives = 61/83 (73%)
Frame = -1
Query: 253 YDSCLYFCGDNVETAIYLLLYVDDMLIACKHRDKITRLKSLLKSEFDMKDLGSASRILGM 74
YDSC+YF N +T IYLLLYVDDMLIA ++ ++ LK LL EF+MKDLG A +ILGM
Sbjct: 994 YDSCVYFKKCNGDTYIYLLLYVDDMLIASANKSEVNELKQLLSREFEMKDLGDAKKILGM 1053
Query: 73 NINRDRADRSLFISQKSFLQKIV 5
I+RDR L +SQ+ +++K++
Sbjct: 1054 EISRDRDAGLLTLSQEGYVKKVL 1076
>gb|ABA99474.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 983
Score = 92.0 bits (227), Expect = 7e-17
Identities = 45/84 (53%), Positives = 64/84 (76%)
Frame = -1
Query: 256 NYDSCLYFCGDNVETAIYLLLYVDDMLIACKHRDKITRLKSLLKSEFDMKDLGSASRILG 77
NYD+C+Y + +AIYLLLYVDDMLIA K + +I +LK+ L SEF+MKDLG+A +ILG
Sbjct: 735 NYDNCVYLKVVD-GSAIYLLLYVDDMLIAAKDKSEIEKLKAQLSSEFEMKDLGAAKKILG 793
Query: 76 MNINRDRADRSLFISQKSFLQKIV 5
M I R+R L++SQK +++K++
Sbjct: 794 MEITRERHSGKLYLSQKGYIEKVL 817
>gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
Japonica Group] gi|77548751|gb|ABA91548.1|
retrotransposon protein, putative, Ty1-copia subclass
[Oryza sativa Japonica Group]
Length = 2340
Score = 92.0 bits (227), Expect = 7e-17
Identities = 46/84 (54%), Positives = 63/84 (75%)
Frame = -1
Query: 256 NYDSCLYFCGDNVETAIYLLLYVDDMLIACKHRDKITRLKSLLKSEFDMKDLGSASRILG 77
NYDSC+Y + +AIYLLLYVDDMLIA K + +I +LK+ L SEF+MKDLG+A +ILG
Sbjct: 1200 NYDSCVYLKVVD-GSAIYLLLYVDDMLIAAKDKSEIAKLKAQLSSEFEMKDLGAAKKILG 1258
Query: 76 MNINRDRADRSLFISQKSFLQKIV 5
M I R R L++SQK +++K++
Sbjct: 1259 MEITRKRHSFKLYLSQKGYIEKVL 1282
>gb|AAM91886.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1280
Score = 92.0 bits (227), Expect = 7e-17
Identities = 46/84 (54%), Positives = 63/84 (75%)
Frame = -1
Query: 256 NYDSCLYFCGDNVETAIYLLLYVDDMLIACKHRDKITRLKSLLKSEFDMKDLGSASRILG 77
NYDSC+Y + +AIYLLLYVDDMLIA K + +I +LK+ L SEF MKDLG+A +ILG
Sbjct: 1028 NYDSCVYLKVVD-GSAIYLLLYVDDMLIAAKDKSEIAKLKAQLSSEFGMKDLGAAKKILG 1086
Query: 76 MNINRDRADRSLFISQKSFLQKIV 5
M I R+R L++SQK +++K++
Sbjct: 1087 MEITRERHSGKLYLSQKGYIKKVL 1110
>gb|AAP54315.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1312
Score = 92.0 bits (227), Expect = 7e-17
Identities = 46/84 (54%), Positives = 63/84 (75%)
Frame = -1
Query: 256 NYDSCLYFCGDNVETAIYLLLYVDDMLIACKHRDKITRLKSLLKSEFDMKDLGSASRILG 77
NYDSC+Y + +AIYLLLYVDDMLIA K + +I +LK+ L SEF MKDLG+A +ILG
Sbjct: 1028 NYDSCVYLKVVD-GSAIYLLLYVDDMLIAAKDKSEIAKLKAQLSSEFGMKDLGAAKKILG 1086
Query: 76 MNINRDRADRSLFISQKSFLQKIV 5
M I R+R L++SQK +++K++
Sbjct: 1087 MEITRERHSGKLYLSQKGYIKKVL 1110
>gb|AAT44257.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1211
Score = 92.0 bits (227), Expect = 7e-17
Identities = 45/84 (53%), Positives = 64/84 (76%)
Frame = -1
Query: 256 NYDSCLYFCGDNVETAIYLLLYVDDMLIACKHRDKITRLKSLLKSEFDMKDLGSASRILG 77
NYDSC+Y + ++IYLLLYVDDMLIA K + +I +LK+ L SEF+MKDLG+A +ILG
Sbjct: 872 NYDSCVYLKVVD-GSSIYLLLYVDDMLIAAKDKSEIEKLKAQLSSEFEMKDLGAAKKILG 930
Query: 76 MNINRDRADRSLFISQKSFLQKIV 5
M I R+R L++SQK +++K++
Sbjct: 931 MEITRERHSGKLYLSQKGYIEKVL 954
>emb|CAD40782.2| OSJNBb0012E08.6 [Oryza sativa Japonica Group]
Length = 375
Score = 92.0 bits (227), Expect = 7e-17
Identities = 47/83 (56%), Positives = 63/83 (75%)
Frame = -1
Query: 253 YDSCLYFCGDNVETAIYLLLYVDDMLIACKHRDKITRLKSLLKSEFDMKDLGSASRILGM 74
+DSC+Y N + IYLLLYVDDMLIA K +++IT LK L SEFDMK+LG+A +ILGM
Sbjct: 51 FDSCVYIKFVN-GSPIYLLLYVDDMLIAAKSKEQITTLKKQLSSEFDMKNLGAAKKILGM 109
Query: 73 NINRDRADRSLFISQKSFLQKIV 5
I RDR LF+SQ+S+++K++
Sbjct: 110 EITRDRNSGLLFLSQQSYIKKVL 132
>gb|AAT44282.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1243
Score = 91.7 bits (226), Expect = 9e-17
Identities = 45/84 (53%), Positives = 63/84 (75%)
Frame = -1
Query: 256 NYDSCLYFCGDNVETAIYLLLYVDDMLIACKHRDKITRLKSLLKSEFDMKDLGSASRILG 77
NYDSC+Y + + IYLLLYVDDMLIA K + +I +LK+ L SEF+MKDLG+A +ILG
Sbjct: 965 NYDSCVYLKVVD-GSVIYLLLYVDDMLIAAKDKSEIEKLKAQLSSEFEMKDLGAAKKILG 1023
Query: 76 MNINRDRADRSLFISQKSFLQKIV 5
M I R+R L++SQK +++K++
Sbjct: 1024 MEITRERHSGKLYLSQKGYIEKVL 1047