BLASTX nr result
ID: Catharanthus22_contig00020778
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Catharanthus22_contig00020778
(1433 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|EXC14993.1| hypothetical protein L484_008147 [Morus notabilis] 55 5e-09
emb|CAN83735.1| hypothetical protein VITISV_000740 [Vitis vinifera] 49 2e-08
emb|CAN69397.1| hypothetical protein VITISV_021035 [Vitis vinifera] 49 3e-08
emb|CAN64055.1| hypothetical protein VITISV_044406 [Vitis vinifera] 50 4e-08
gb|AAC26250.1| contains similarity to reverse transcriptase (Pfa... 49 5e-08
emb|CAN67199.1| hypothetical protein VITISV_017217 [Vitis vinifera] 47 8e-08
gb|ADJ18449.1| gag/pol protein [Bryonia dioica] 51 8e-08
emb|CAN77149.1| hypothetical protein VITISV_019364 [Vitis vinifera] 50 1e-07
emb|CAN65627.1| hypothetical protein VITISV_032735 [Vitis vinifera] 49 4e-07
gb|ABA96688.1| retrotransposon protein, putative, Ty1-copia subc... 50 4e-07
gb|EXC30801.1| hypothetical protein L484_027980 [Morus notabilis] 48 4e-07
gb|ADB85429.1| putative retrotransposon protein [Phyllostachys e... 47 5e-07
gb|ADB85430.1| putative retrotransposon protein [Phyllostachys e... 47 5e-07
dbj|BAA22288.1| polyprotein [Oryza australiensis] 49 1e-06
gb|ABF97047.1| retrotransposon protein, putative, Ty1-copia subc... 49 1e-06
gb|AAP44605.1| putative polyprotein [Oryza sativa Japonica Group] 49 1e-06
emb|CAE02400.1| OSJNBa0024J22.4 [Oryza sativa Japonica Group] gi... 49 1e-06
gb|AAV85747.1| Integrase core domain, putative [Oryza sativa Jap... 48 2e-06
gb|ABG22008.1| retrotransposon protein, putative, Ty1-copia subc... 48 2e-06
gb|ABF96975.1| retrotransposon protein, putative, Ty1-copia subc... 49 3e-06
>gb|EXC14993.1| hypothetical protein L484_008147 [Morus notabilis]
Length = 175
Score = 55.1 bits (131), Expect(2) = 5e-09
Identities = 29/65 (44%), Positives = 43/65 (66%), Gaps = 1/65 (1%)
Frame = +2
Query: 122 KDAVLLHKFLMEL-IRSSAKHRQIDYYDNIGAILSQCKEPRSHKKSKYVERKYYFISIFI 298
K+AV L KFL+ L + A + Y DN GA+ + KEPRSHK+SK++ERKY+ I +
Sbjct: 72 KEAVWLKKFLVSLEVVPDADRPMVLYCDNSGAVANS-KEPRSHKRSKHIERKYHLIREIV 130
Query: 299 QKEEI 313
Q+ ++
Sbjct: 131 QRGDV 135
Score = 33.9 bits (76), Expect(2) = 5e-09
Identities = 15/26 (57%), Positives = 22/26 (84%)
Frame = +1
Query: 40 TISWKSIKQS*IANSSMKLEYVAAFE 117
++ W+SIKQ+ IA+S+M+ EYVAA E
Sbjct: 44 SVVWRSIKQTCIADSTMEAEYVAACE 69
>emb|CAN83735.1| hypothetical protein VITISV_000740 [Vitis vinifera]
Length = 230
Score = 48.9 bits (115), Expect(3) = 2e-08
Identities = 26/70 (37%), Positives = 42/70 (60%), Gaps = 1/70 (1%)
Frame = +2
Query: 122 KDAVLLHKFLMELIRSSAKHRQIDYY-DNIGAILSQCKEPRSHKKSKYVERKYYFISIFI 298
K+AV L +FL EL H I Y DN GA+ + KEPR+H+K K++ERK++ + +
Sbjct: 127 KEAVWLREFLKELEVVPNMHEPIRLYCDNSGAV-ANAKEPRNHRKGKHIERKFHLVRKVV 185
Query: 299 QKEEIPSLNL 328
+ ++ N+
Sbjct: 186 SRGDVSVENI 195
Score = 32.7 bits (73), Expect(3) = 2e-08
Identities = 18/39 (46%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Frame = +1
Query: 4 KFTNRYV-PLSRRTISWKSIKQS*IANSSMKLEYVAAFE 117
K T+R V L I W+S+KQ+ + +S+M+ EYVAA E
Sbjct: 86 KSTSRAVFTLGGGAIIWRSVKQTCVVDSTMEAEYVAACE 124
Score = 24.6 bits (52), Expect(3) = 2e-08
Identities = 9/22 (40%), Positives = 17/22 (77%)
Frame = +1
Query: 310 DPFTKPLAEKVIKRNLDVLGVR 375
DPFTK L + ++++L+ +G+R
Sbjct: 203 DPFTKTLPARSLEQHLEGMGLR 224
>emb|CAN69397.1| hypothetical protein VITISV_021035 [Vitis vinifera]
Length = 668
Score = 48.5 bits (114), Expect(3) = 3e-08
Identities = 25/65 (38%), Positives = 40/65 (61%), Gaps = 1/65 (1%)
Frame = +2
Query: 122 KDAVLLHKFLMELIRSSAKHRQIDYY-DNIGAILSQCKEPRSHKKSKYVERKYYFISIFI 298
K+AV L +FL EL H I Y DN GA+ + KEPR+H+K K++ERK++ + +
Sbjct: 565 KEAVWLREFLKELEVVPNMHEPIRLYCDNSGAV-ANAKEPRNHRKGKHIERKFHLVREIV 623
Query: 299 QKEEI 313
+ ++
Sbjct: 624 SRGDV 628
Score = 33.1 bits (74), Expect(3) = 3e-08
Identities = 14/25 (56%), Positives = 21/25 (84%)
Frame = +1
Query: 43 ISWKSIKQS*IANSSMKLEYVAAFE 117
I W+S+KQ+ +A+S+M+ EYVAA E
Sbjct: 538 IIWRSVKQTCVADSTMEAEYVAACE 562
Score = 23.9 bits (50), Expect(3) = 3e-08
Identities = 9/22 (40%), Positives = 16/22 (72%)
Frame = +1
Query: 310 DPFTKPLAEKVIKRNLDVLGVR 375
DPFTK L + +++L+ +G+R
Sbjct: 641 DPFTKTLPARSFEQHLEGMGLR 662
>emb|CAN64055.1| hypothetical protein VITISV_044406 [Vitis vinifera]
Length = 633
Score = 50.1 bits (118), Expect(2) = 4e-08
Identities = 27/62 (43%), Positives = 41/62 (66%), Gaps = 1/62 (1%)
Frame = +2
Query: 122 KDAVLLHKFLMEL-IRSSAKHRQIDYYDNIGAILSQCKEPRSHKKSKYVERKYYFISIFI 298
K+AV L FL++L + S + Y DN GA+ + KEPRSHK++K++ERKY+ I +
Sbjct: 530 KEAVWLRNFLLDLGVVPSVQSPITLYCDNSGAVANS-KEPRSHKRAKHIERKYHLIRDIV 588
Query: 299 QK 304
Q+
Sbjct: 589 QR 590
Score = 35.8 bits (81), Expect(2) = 4e-08
Identities = 16/25 (64%), Positives = 22/25 (88%)
Frame = +1
Query: 43 ISWKSIKQS*IANSSMKLEYVAAFE 117
ISW+SIKQ+ +A+S+M+ EYVAA E
Sbjct: 503 ISWRSIKQTXVADSTMEAEYVAASE 527
>gb|AAC26250.1| contains similarity to reverse transcriptase (Pfam: rvt.hmm, score
19.29) [Arabidopsis thaliana] gi|7267136|emb|CAB80804.1|
putative retrotransposon protein [Arabidopsis thaliana]
Length = 964
Score = 48.9 bits (115), Expect(3) = 5e-08
Identities = 27/65 (41%), Positives = 42/65 (64%), Gaps = 1/65 (1%)
Frame = +2
Query: 122 KDAVLLHKFLMELIRSSAKHRQIDYY-DNIGAILSQCKEPRSHKKSKYVERKYYFISIFI 298
K+ V + KF+ EL + ID Y DN GAI +Q KEP+SH+KSK+++R+Y+ I I
Sbjct: 863 KEVVWIRKFITELGVVPSISGPIDLYCDNNGAI-AQAKEPKSHQKSKHIQRRYHLIREII 921
Query: 299 QKEEI 313
+ ++
Sbjct: 922 DRGDV 926
Score = 33.5 bits (75), Expect(3) = 5e-08
Identities = 15/30 (50%), Positives = 22/30 (73%)
Frame = +1
Query: 28 LSRRTISWKSIKQS*IANSSMKLEYVAAFE 117
L+ +SWKS KQS +A+S+ + EY+AA E
Sbjct: 831 LNGGAVSWKSTKQSTVADSTTEAEYIAASE 860
Score = 22.3 bits (46), Expect(3) = 5e-08
Identities = 9/25 (36%), Positives = 14/25 (56%)
Frame = +1
Query: 310 DPFTKPLAEKVIKRNLDVLGVRLFK 384
D FTKPL + + + +G+R K
Sbjct: 939 DHFTKPLPQPKHESHTTAIGIRFIK 963
>emb|CAN67199.1| hypothetical protein VITISV_017217 [Vitis vinifera]
Length = 961
Score = 47.0 bits (110), Expect(3) = 8e-08
Identities = 24/65 (36%), Positives = 40/65 (61%), Gaps = 1/65 (1%)
Frame = +2
Query: 122 KDAVLLHKFLMELIRSSAKHRQIDYY-DNIGAILSQCKEPRSHKKSKYVERKYYFISIFI 298
K+AV L +FL EL H I Y DN GA+ + KEP++H+K K++ERK++ + +
Sbjct: 858 KEAVWLREFLKELEVVPNMHELIRLYCDNSGAV-ANAKEPKNHRKGKHIERKFHLVREIV 916
Query: 299 QKEEI 313
+ ++
Sbjct: 917 SRGDV 921
Score = 33.1 bits (74), Expect(3) = 8e-08
Identities = 14/25 (56%), Positives = 21/25 (84%)
Frame = +1
Query: 43 ISWKSIKQS*IANSSMKLEYVAAFE 117
I W+S+KQ+ +A+S+M+ EYVAA E
Sbjct: 814 IIWRSVKQTCVADSTMEAEYVAACE 838
Score = 23.9 bits (50), Expect(3) = 8e-08
Identities = 9/22 (40%), Positives = 16/22 (72%)
Frame = +1
Query: 310 DPFTKPLAEKVIKRNLDVLGVR 375
DPFTK L + +++L+ +G+R
Sbjct: 934 DPFTKTLPTRSFEQHLEGMGLR 955
>gb|ADJ18449.1| gag/pol protein [Bryonia dioica]
Length = 1292
Score = 51.2 bits (121), Expect(2) = 8e-08
Identities = 28/65 (43%), Positives = 40/65 (61%), Gaps = 1/65 (1%)
Frame = +2
Query: 122 KDAVLLHKFLMELIRSSAKHRQIDYY-DNIGAILSQCKEPRSHKKSKYVERKYYFISIFI 298
K+AV L KFL +L H I Y DN GA+ + KEPRSHK+ K++ERKY+ I +
Sbjct: 1225 KEAVWLRKFLTDLEVVPNMHLPITLYCDNSGAVANS-KEPRSHKRGKHIERKYHLIREIV 1283
Query: 299 QKEEI 313
+ ++
Sbjct: 1284 HRGDV 1288
Score = 33.5 bits (75), Expect(2) = 8e-08
Identities = 15/30 (50%), Positives = 23/30 (76%)
Frame = +1
Query: 28 LSRRTISWKSIKQS*IANSSMKLEYVAAFE 117
L+ + W+S+KQ+ IA+S+M+ EYVAA E
Sbjct: 1193 LNGGAVVWRSVKQTCIADSTMEAEYVAACE 1222
>emb|CAN77149.1| hypothetical protein VITISV_019364 [Vitis vinifera]
Length = 1544
Score = 49.7 bits (117), Expect(2) = 1e-07
Identities = 26/65 (40%), Positives = 42/65 (64%), Gaps = 1/65 (1%)
Frame = +2
Query: 122 KDAVLLHKFLMEL-IRSSAKHRQIDYYDNIGAILSQCKEPRSHKKSKYVERKYYFISIFI 298
K+ V L FL++L + S + Y DN GA+ + KEPRSHK++K++ERKY+ I +
Sbjct: 1441 KEVVWLRNFLLDLGVVPSVQSPITLYCDNSGAVANS-KEPRSHKRAKHIERKYHLIRDIV 1499
Query: 299 QKEEI 313
Q+ ++
Sbjct: 1500 QRGDV 1504
Score = 34.7 bits (78), Expect(2) = 1e-07
Identities = 16/30 (53%), Positives = 23/30 (76%)
Frame = +1
Query: 28 LSRRTISWKSIKQS*IANSSMKLEYVAAFE 117
L ISW+SIKQ+ +A+S+M+ +YVAA E
Sbjct: 1409 LGSGAISWRSIKQTCVADSTMEAKYVAASE 1438
>emb|CAN65627.1| hypothetical protein VITISV_032735 [Vitis vinifera]
Length = 1285
Score = 48.9 bits (115), Expect(2) = 4e-07
Identities = 26/65 (40%), Positives = 42/65 (64%), Gaps = 1/65 (1%)
Frame = +2
Query: 122 KDAVLLHKFLMEL-IRSSAKHRQIDYYDNIGAILSQCKEPRSHKKSKYVERKYYFISIFI 298
K+AV L FL++L + S + Y DN GA+ + KEPRSHK++K++ RKY+ I +
Sbjct: 1182 KEAVWLRNFLLDLGVVPSVQSPITLYCDNSGAVANS-KEPRSHKRAKHIXRKYHLIRDIV 1240
Query: 299 QKEEI 313
Q+ ++
Sbjct: 1241 QRGDV 1245
Score = 33.5 bits (75), Expect(2) = 4e-07
Identities = 15/25 (60%), Positives = 21/25 (84%)
Frame = +1
Query: 43 ISWKSIKQS*IANSSMKLEYVAAFE 117
ISW+SIKQ+ +A+ +M+ EYVAA E
Sbjct: 1155 ISWRSIKQTCVADFTMEAEYVAASE 1179
>gb|ABA96688.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 325
Score = 50.1 bits (118), Expect(2) = 4e-07
Identities = 27/65 (41%), Positives = 44/65 (67%), Gaps = 1/65 (1%)
Frame = +2
Query: 122 KDAVLLHKFLMEL-IRSSAKHRQIDYYDNIGAILSQCKEPRSHKKSKYVERKYYFISIFI 298
K+AV ++KF+ +L + +SA Y DN GAI +Q KEPRSH+KSK++ R+Y+ I +
Sbjct: 242 KEAVWINKFVSQLGVMASASSPMDLYCDNSGAI-AQAKEPRSHQKSKHILRRYHLIHEIV 300
Query: 299 QKEEI 313
+ ++
Sbjct: 301 GRGDV 305
Score = 32.3 bits (72), Expect(2) = 4e-07
Identities = 15/30 (50%), Positives = 21/30 (70%)
Frame = +1
Query: 28 LSRRTISWKSIKQS*IANSSMKLEYVAAFE 117
L+ +SWKS KQ +A+S+ K EY+AA E
Sbjct: 210 LNGGAVSWKSSKQDIVADSTTKPEYIAASE 239
>gb|EXC30801.1| hypothetical protein L484_027980 [Morus notabilis]
Length = 225
Score = 48.1 bits (113), Expect(2) = 4e-07
Identities = 25/65 (38%), Positives = 40/65 (61%), Gaps = 1/65 (1%)
Frame = +2
Query: 122 KDAVLLHKFLMELIRSSAKHRQIDYY-DNIGAILSQCKEPRSHKKSKYVERKYYFISIFI 298
K+AV L +FL EL H I Y DN GA+ + KEPR+H+K K++ERK++ + +
Sbjct: 122 KEAVWLREFLKELEVVPNMHEPIILYCDNSGAV-ANAKEPRNHRKGKHIERKFHLVREIV 180
Query: 299 QKEEI 313
+ ++
Sbjct: 181 SRGDV 185
Score = 34.3 bits (77), Expect(2) = 4e-07
Identities = 17/30 (56%), Positives = 22/30 (73%)
Frame = +1
Query: 28 LSRRTISWKSIKQS*IANSSMKLEYVAAFE 117
L I W+SIKQS IA+S+++ EYVAA E
Sbjct: 90 LGNGAIIWRSIKQSCIADSTVEAEYVAACE 119
>gb|ADB85429.1| putative retrotransposon protein [Phyllostachys edulis]
Length = 1313
Score = 46.6 bits (109), Expect(3) = 5e-07
Identities = 26/65 (40%), Positives = 40/65 (61%), Gaps = 1/65 (1%)
Frame = +2
Query: 122 KDAVLLHKFLMEL-IRSSAKHRQIDYYDNIGAILSQCKEPRSHKKSKYVERKYYFISIFI 298
K+ V + F+ EL + SA Y DN GAI +Q KEPRSH+KSK++ R+Y+ I +
Sbjct: 1212 KEGVWIRNFIAELGVVPSASSPMDLYCDNNGAI-AQAKEPRSHQKSKHILRRYHLIRELV 1270
Query: 299 QKEEI 313
+ ++
Sbjct: 1271 DRGDV 1275
Score = 33.1 bits (74), Expect(3) = 5e-07
Identities = 15/30 (50%), Positives = 21/30 (70%)
Frame = +1
Query: 28 LSRRTISWKSIKQS*IANSSMKLEYVAAFE 117
L+ +SWKS KQ +A+S+ K EY+AA E
Sbjct: 1180 LNGGAVSWKSSKQETVADSTTKAEYIAASE 1209
Score = 21.6 bits (44), Expect(3) = 5e-07
Identities = 8/22 (36%), Positives = 13/22 (59%)
Frame = +1
Query: 310 DPFTKPLAEKVIKRNLDVLGVR 375
DP TKPL + + + +G+R
Sbjct: 1288 DPLTKPLTQPKHEAHTRAIGIR 1309
>gb|ADB85430.1| putative retrotransposon protein [Phyllostachys edulis]
Length = 896
Score = 46.6 bits (109), Expect(3) = 5e-07
Identities = 25/65 (38%), Positives = 40/65 (61%), Gaps = 1/65 (1%)
Frame = +2
Query: 122 KDAVLLHKFLMELIRSSAKHRQIDYY-DNIGAILSQCKEPRSHKKSKYVERKYYFISIFI 298
K+ V + F+ EL + +D Y DN GAI +Q KEPRSH+KSK++ R+Y+ I +
Sbjct: 796 KEGVWIRNFITELGMVPSASSPMDLYCDNNGAI-AQAKEPRSHQKSKHILRRYHLIRELV 854
Query: 299 QKEEI 313
+ ++
Sbjct: 855 DRGDV 859
Score = 31.6 bits (70), Expect(3) = 5e-07
Identities = 14/30 (46%), Positives = 21/30 (70%)
Frame = +1
Query: 28 LSRRTISWKSIKQS*IANSSMKLEYVAAFE 117
L+ +SWKS KQ +A+S+ + EY+AA E
Sbjct: 764 LNGGAVSWKSSKQETVADSTTEAEYIAASE 793
Score = 23.1 bits (48), Expect(3) = 5e-07
Identities = 9/25 (36%), Positives = 14/25 (56%)
Frame = +1
Query: 310 DPFTKPLAEKVIKRNLDVLGVRLFK 384
DP TKPL + + + +G+R K
Sbjct: 872 DPLTKPLTQPKHEAHTRAIGIRYLK 896
>dbj|BAA22288.1| polyprotein [Oryza australiensis]
Length = 1317
Score = 49.3 bits (116), Expect(2) = 1e-06
Identities = 27/65 (41%), Positives = 42/65 (64%), Gaps = 1/65 (1%)
Frame = +2
Query: 122 KDAVLLHKFLMEL-IRSSAKHRQIDYYDNIGAILSQCKEPRSHKKSKYVERKYYFISIFI 298
K+AV + KF+ EL + +S Y DN GAI +Q KEPRSH+KSK++ R+Y+ I +
Sbjct: 1216 KEAVWIKKFVSELGVMTSTTGPMSLYCDNSGAI-AQAKEPRSHQKSKHILRRYHLIREIV 1274
Query: 299 QKEEI 313
+ ++
Sbjct: 1275 DRGDV 1279
Score = 31.6 bits (70), Expect(2) = 1e-06
Identities = 14/30 (46%), Positives = 21/30 (70%)
Frame = +1
Query: 28 LSRRTISWKSIKQS*IANSSMKLEYVAAFE 117
L+ +SWKS KQ +A+S+ + EY+AA E
Sbjct: 1184 LNGGAVSWKSSKQDTVADSTTEAEYIAASE 1213
>gb|ABF97047.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1248
Score = 49.3 bits (116), Expect(2) = 1e-06
Identities = 27/65 (41%), Positives = 43/65 (66%), Gaps = 1/65 (1%)
Frame = +2
Query: 122 KDAVLLHKFLMEL-IRSSAKHRQIDYYDNIGAILSQCKEPRSHKKSKYVERKYYFISIFI 298
K+AV + KF+ +L + +SA Y DN GAI +Q KEPRSH+KSK++ R+Y+ I +
Sbjct: 1165 KEAVWIKKFVSQLGVMTSASSPMDLYCDNSGAI-AQAKEPRSHQKSKHILRRYHLIREMV 1223
Query: 299 QKEEI 313
+ ++
Sbjct: 1224 GRGDV 1228
Score = 31.6 bits (70), Expect(2) = 1e-06
Identities = 14/30 (46%), Positives = 21/30 (70%)
Frame = +1
Query: 28 LSRRTISWKSIKQS*IANSSMKLEYVAAFE 117
L+ +SWKS KQ +A+S+ + EY+AA E
Sbjct: 1133 LNGGAVSWKSSKQDTVADSTTEAEYIAASE 1162
>gb|AAP44605.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1161
Score = 49.3 bits (116), Expect(2) = 1e-06
Identities = 27/65 (41%), Positives = 43/65 (66%), Gaps = 1/65 (1%)
Frame = +2
Query: 122 KDAVLLHKFLMEL-IRSSAKHRQIDYYDNIGAILSQCKEPRSHKKSKYVERKYYFISIFI 298
K+AV + KF+ +L + +SA Y DN GAI +Q KEPRSH+KSK++ R+Y+ I +
Sbjct: 1078 KEAVWIKKFVSQLGVMTSASSPMDLYCDNSGAI-AQAKEPRSHQKSKHILRRYHLIREMV 1136
Query: 299 QKEEI 313
+ ++
Sbjct: 1137 GRGDV 1141
Score = 31.6 bits (70), Expect(2) = 1e-06
Identities = 14/30 (46%), Positives = 21/30 (70%)
Frame = +1
Query: 28 LSRRTISWKSIKQS*IANSSMKLEYVAAFE 117
L+ +SWKS KQ +A+S+ + EY+AA E
Sbjct: 1046 LNGGAVSWKSSKQDTVADSTTEAEYIAASE 1075
>emb|CAE02400.1| OSJNBa0024J22.4 [Oryza sativa Japonica Group]
gi|38347202|emb|CAD40526.2| OSJNBa0023J03.14 [Oryza
sativa Japonica Group] gi|116308930|emb|CAH66059.1|
OSIGBa0125J07.8 [Oryza sativa Indica Group]
gi|116309043|emb|CAH66155.1| OSIGBa0113B06.1 [Oryza
sativa Indica Group]
Length = 704
Score = 48.9 bits (115), Expect(2) = 1e-06
Identities = 26/65 (40%), Positives = 43/65 (66%), Gaps = 1/65 (1%)
Frame = +2
Query: 122 KDAVLLHKFLMELIRSSAKHRQIDYY-DNIGAILSQCKEPRSHKKSKYVERKYYFISIFI 298
K+ V + KF+ +L ++ R +D Y DN GAI +Q KEPRSH+KSK++ R+Y+ I +
Sbjct: 603 KEVVWIKKFVSQLGVMTSTSRPMDLYCDNSGAI-AQAKEPRSHQKSKHILRRYHLIREIV 661
Query: 299 QKEEI 313
+ ++
Sbjct: 662 GRGDV 666
Score = 32.0 bits (71), Expect(2) = 1e-06
Identities = 14/30 (46%), Positives = 22/30 (73%)
Frame = +1
Query: 28 LSRRTISWKSIKQS*IANSSMKLEYVAAFE 117
L+ +SWKS KQ+ +A+S+ + EY+AA E
Sbjct: 571 LNGGAVSWKSSKQNTVADSTTEAEYIAASE 600
>gb|AAV85747.1| Integrase core domain, putative [Oryza sativa Japonica Group]
gi|62701883|gb|AAX92956.1| retrotransposon protein,
putative, Ty1-copia sub-class [Oryza sativa Japonica
Group] gi|108864259|gb|ABA92827.2| retrotransposon
protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1184
Score = 47.8 bits (112), Expect(3) = 2e-06
Identities = 26/68 (38%), Positives = 43/68 (63%), Gaps = 1/68 (1%)
Frame = +2
Query: 113 LKCKDAVLLHKFLMEL-IRSSAKHRQIDYYDNIGAILSQCKEPRSHKKSKYVERKYYFIS 289
+ +AV + KF+ +L + +SA Y DN GAI +Q KEPRSH+KSK++ R+Y+ I
Sbjct: 1080 IAASEAVWIKKFVSQLGVMTSASSSMDLYCDNSGAI-AQAKEPRSHQKSKHILRQYHLIR 1138
Query: 290 IFIQKEEI 313
+ + ++
Sbjct: 1139 EIVGRGDV 1146
Score = 30.0 bits (66), Expect(3) = 2e-06
Identities = 13/30 (43%), Positives = 20/30 (66%)
Frame = +1
Query: 28 LSRRTISWKSIKQS*IANSSMKLEYVAAFE 117
L+ +SWKS KQ + +S+ + EY+AA E
Sbjct: 1055 LNGGAVSWKSSKQDIVVDSTTEAEYIAASE 1084
Score = 21.2 bits (43), Expect(3) = 2e-06
Identities = 8/22 (36%), Positives = 13/22 (59%)
Frame = +1
Query: 310 DPFTKPLAEKVIKRNLDVLGVR 375
DP TKPL + + + +G+R
Sbjct: 1159 DPLTKPLPQPKHEAHTRAMGIR 1180
>gb|ABG22008.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 932
Score = 48.1 bits (113), Expect(2) = 2e-06
Identities = 26/65 (40%), Positives = 42/65 (64%), Gaps = 1/65 (1%)
Frame = +2
Query: 122 KDAVLLHKFLMEL-IRSSAKHRQIDYYDNIGAILSQCKEPRSHKKSKYVERKYYFISIFI 298
K+A + KF+ +L + +SA Y DN GAI +Q KEPRSH+KSK++ R+Y+ I +
Sbjct: 840 KEAAWIKKFVSQLGVMTSASSPMDLYCDNSGAI-AQAKEPRSHRKSKHILRRYHLIREIV 898
Query: 299 QKEEI 313
+ ++
Sbjct: 899 GRGDV 903
Score = 31.6 bits (70), Expect(2) = 2e-06
Identities = 14/30 (46%), Positives = 21/30 (70%)
Frame = +1
Query: 28 LSRRTISWKSIKQS*IANSSMKLEYVAAFE 117
L+ +SWKS KQ +A+S+ + EY+AA E
Sbjct: 808 LNGGAVSWKSSKQDTVADSTTEAEYIAASE 837
>gb|ABF96975.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 562
Score = 49.3 bits (116), Expect(2) = 3e-06
Identities = 28/65 (43%), Positives = 42/65 (64%), Gaps = 1/65 (1%)
Frame = +2
Query: 122 KDAVLLHKFLMEL-IRSSAKHRQIDYYDNIGAILSQCKEPRSHKKSKYVERKYYFISIFI 298
K+AV + KF+ +L + +SA Y DN GAI +Q KEPRSH+KSKY+ R Y+ I +
Sbjct: 461 KEAVWIKKFVSQLGVMTSASSPMDLYCDNSGAI-AQAKEPRSHQKSKYILRWYHLIREIV 519
Query: 299 QKEEI 313
+ ++
Sbjct: 520 GRGDV 524
Score = 30.0 bits (66), Expect(2) = 3e-06
Identities = 12/25 (48%), Positives = 19/25 (76%)
Frame = +1
Query: 43 ISWKSIKQS*IANSSMKLEYVAAFE 117
+SWK+ KQ +A+S+ + EY+AA E
Sbjct: 434 VSWKNSKQDTVADSTTEAEYIAASE 458